=> Bootstrap dependency digest>=20211023: found digest-20220214 ===> Building for ncbi-blast+-2.14.0nb1 if test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.flat; then \ cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build && /opt/pkg/bin/gmake -f Makefile.flat; \ elif test -s ""; then \ cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build && /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56874 all_p; \ else \ cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build && /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56874 all_r; \ fi gmake[1]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build' gmake[1]: warning: -j3 forced in submake: resetting jobserver mode. Build session ID: 3B23D656-1A95-4E81-88B4-0E199952C028 /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/ctools/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/gui/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/sample/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/gui/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/gui/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/sample/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/sample/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/ctools/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/ctools/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/internal/Makefile.in` /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT ctools/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT gui/Makefile test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/internal/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/internal/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT sample/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/ctools/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/gui/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sample/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT internal/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/internal/Makefile /opt/pkg/bin/gmake -C corelib -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56877 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/jaeger/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/jaeger/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/jaeger/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT jaeger/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib/jaeger/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib/test/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake[4] (Makefile.precompile): Nothing to be done for `all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib TMPL=corelib -j3 --jobserver-auth=fifo:/var/tmp//GMfifo57581 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib TMPL=test_mt -j3 --jobserver-auth=fifo:/var/tmp//GMfifo57581 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib TMPL=corelib -j3 --jobserver-auth=fifo:/var/tmp//GMfifo57581 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib TMPL=test_mt -j3 --jobserver-auth=fifo:/var/tmp//GMfifo57581 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib TMPL=corelib -j3 --jobserver-auth=fifo:/var/tmp//GMfifo57581 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_os_unix.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ddumpable.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/blob_storage.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/env_reg.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/metareg.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_config.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_param.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_process.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_safe_static.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_signal.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_stack.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_system.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbiapp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbiargs.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbiatomic.cpp. Updating dependency information for ncbicfg.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbidbg.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbidiag.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbidiag_p.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbidll.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbienv.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbiexec.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbiexpt.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbifile.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbimempool.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbimtx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbiobj.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbireg.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbistr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbistre.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbithr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbitime.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/obj_store.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/plugin_manager.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/plugin_manager_store.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/rwstreambuf.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/stream_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/syslog.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/version.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/request_ctx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/request_control.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/expr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_strings.c. 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_cookies.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/guard.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/request_status.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_message.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_fast.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_dbsvcmapper.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_pool_balancer.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_os_unix.cpp -o ncbi_os_unix.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include 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-DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ddumpable.cpp -o ddumpable.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/env_reg.cpp -o env_reg.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/metareg.cpp -o metareg.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_config.cpp -o ncbi_config.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_param.cpp -o ncbi_param.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_process.cpp -o ncbi_process.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_safe_static.cpp -o ncbi_safe_static.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include 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-DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_stack.cpp -o ncbi_stack.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_system.cpp -o ncbi_system.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbiapp.cpp -o ncbiapp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbiargs.cpp -o ncbiargs.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbiatomic.cpp -o ncbiatomic.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 ncbicfg.c -o ncbicfg.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbidbg.cpp -o ncbidbg.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -st/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbidiag.cpp:956:20: warning: 'GetProperties' is deprecated [-Wdeprecated-declarations] value->GetProperties(CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbidiag.cpp:464:5: note: 'GetProperties' has been explicitly marked deprecated here NCBI_DEPRECATED TProperties* GetProperties(EGetProperties flag); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbidiag.cpp:3748:26: warning: 'SetupDiag_AppSpecific' is deprecated [-Wdeprecated-declarations] app->SetupDiag_AppSpecific(); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbiapp_api.hpp:395:5: note: 'SetupDiag_AppSpecific' has been explicitly marked deprecated here NCBI_DEPRECATED virtual bool SetupDiag_AppSpecific(void); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbidll.cpp:226:25: warning: 'NSLookupSymbolInModule' is deprecated: first deprecated in macOS 10.5 - dlsym() [-Wdeprecated-declarations] NSSymbol nssymbol = NSLookupSymbolInModule(module, name.c_str()); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.3.sdk/usr/include/mach-o/dyld.h:200:17: note: 'NSLookupSymbolInModule' has been explicitly marked deprecated here extern NSSymbol NSLookupSymbolInModule(NSModule module, const char* symbolName) __API_UNAVAILABLE(ios, tvos, watchos) DYLD_DRIVERKIT_UNAVAILABLE __OSX_DEPRECATED(10.1, 10.5, "dlsym()"); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbidll.cpp:228:11: warning: 'NSAddressOfSymbol' is deprecated: first deprecated in macOS 10.5 - dlsym() [-Wdeprecated-declarations] ptr = NSAddressOfSymbol(nssymbol); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.3.sdk/usr/include/mach-o/dyld.h:207:21: note: 'NSAddressOfSymbol' has been explicitly marked deprecated here extern void * NSAddressOfSymbol(NSSymbol symbol) __API_UNAVAILABLE(ios, tvos, watchos) DYLD_DRIVERKIT_UNAVAILABLE __OSX_DEPRECATED(10.1, 10.5, "dlsym()"); ^ 2 warnings generated. dlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbidiag.cpp -o ncbidiag.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbidiag_p.cpp -o ncbidiag_p.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbidll.cpp -o ncbidll.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbienv.cpp -o ncbienv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbiexec.cpp -o ncbiexec.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biol2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbifile.cpp:5160:10: warning: variable 'need_name_max' set but not used [-Wunused-but-set-variable] bool need_name_max = true; ^ ogy/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbiexpt.cpp -o ncbiexpt.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbifile.cpp -o ncbifile.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbimempool.cpp -o ncbimempool.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbimtx.cpp -o ncbimtx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbiobj.cpp -o ncbiobj.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbireg.cpp -o ncbireg.o /Users/pbulk/build/biology/ncbi-blast+/work/.1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbistr.cpp:4914:35: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return ParseEscapes(s_Unquote(move(str), n_read)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbistr.cpp:4982:47: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return s_ParseJsonEncodeEscapes(s_Unquote(move(str), n_read)); ^ std:: 2 warnings generated. cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbistr.cpp -o ncbistr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbistre.cpp -o ncbistre.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbithr.cpp -o ncbithr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbitime.cpp -o ncbitime.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/obj_store.cpp -o obj_store.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -IIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbitime.cpp:32: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbitime.hpp:1926:13: warning: private field 'm_Daylight' is not used [-Wunused-private-field] int m_Daylight; ///< Cached system daylight information ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/plugin_manager.cpp -o plugin_manager.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/plugin_manager_store.cpp -o plugin_manager_store.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/rwstreambuf.cpp -o rwstreambuf.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/stream_utils.cpp -o stream_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/syslog.cpp -o syslog.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/version.cpp -o version.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/request_ctx.cpp -o request_ctx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/request_control.cpp -o request_control.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/expr.cpp -o expr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_strings.c -o ncbi_strings.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/resource_info.cpp -o resource_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/iIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/expr.cpp:36: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/expr.hpp:369:17: warning: private field 'm_TmpVarCount' is not used [-Wunused-private-field] int m_TmpVarCount; ^ 1 warning generated. nclude -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/interprocess_lock.cpp -o interprocess_lock.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_autoinit.cpp -o ncbi_autoinit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/perf_log.cpp -o perf_log.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_toolkit.cpp -o ncbi_toolkit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbierror.cpp -o ncbierror.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_url.cpp -o ncbi_url.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_cookies.cpp -o ncbi_cookies.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/guard.cpp -o guard.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_message.cpp -o ncbi_message.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/request_status.cpp -o request_status.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_fast.cpp -o ncbi_fast.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_dbsvcmapper.cpp -o ncbi_dbsvcmapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/ncbi_pool_balancer.cpp -o ncbi_pool_balancer.o /bin/rm -f libxncbi.a .libxncbi.a.stamp ar cr libxncbi.a ncbi_os_unix.o blob_storage.o ddumpable.o env_reg.o metareg.o ncbi_config.o ncbi_param.o ncbi_process.o ncbi_safe_static.o ncbi_signal.o ncbi_stack.o ncbi_system.o ncbiapp.o ncbiargs.o ncbiatomic.o ncbicfg.o ncbidbg.o ncbidiag.o ncbidiag_p.o ncbidll.o ncbienv.o ncbiexec.o ncbiexpt.o ncbifile.o ncbimempool.o ncbimtx.o ncbiobj.o ncbireg.o ncbistr.o ncbistre.o ncbithr.o ncbitime.o obj_store.o plugin_manager.o plugin_manager_store.o rwstreambuf.o stream_utils.o syslog.o version.o request_ctx.o request_control.o expr.o ncbi_strings.o resource_info.o interprocess_lock.o ncbi_autoinit.o perf_log.o ncbi_toolkit.o ncbierror.o ncbi_url.o ncbi_cookies.o guard.o ncbi_message.o request_status.o ncbi_fast.o ncbi_dbsvcmapper.o ncbi_pool_balancer.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxncbi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxncbi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxncbi.a /bin/ln -f .xncbi.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xncbi.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib TMPL=test_mt -j3 --jobserver-auth=fifo:/var/tmp//GMfifo57581 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/test_mt.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/corelib/test_mt.cpp -o test_mt.o /bin/rm -f libtest_mt.a .libtest_mt.a.stamp ar cr libtest_mt.a test_mt.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_mt.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libtest_mt.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libtest_mt.a /bin/ln -f .test_mt.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.test_mt.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo57549 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib/test' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib/test' /opt/pkg/bin/gmake -C jaeger -j3 --jobserver-auth=fifo:/var/tmp//GMfifo57549 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib/jaeger' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib/jaeger' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/corelib' /opt/pkg/bin/gmake -C util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56877 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/diff/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/image/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/qparse/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/image/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/image/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/qparse/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/qparse/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/diff/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/diff/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/demo/Makefile.in` /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT diff/Makefile test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/demo/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/demo/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT image/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT qparse/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/diff/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/qparse/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/image/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT demo/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/demo/Makefile gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util TMPL=util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo66698 export-headers gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util TMPL=util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo66698 flag-stamps gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util TMPL=util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo66698 all gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/utf8.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/checksum.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/random_gen.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/checksum_cityhash.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/checksum_farmhash.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/bytesrc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/strbuffer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/itree.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/smalldns.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/thread_pool_old.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/ddump_viewer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/strsearch.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/logrotate.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/format_guess.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/ascii85.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/md5.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/file_obsolete.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/unicode.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/dictionary.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/dictionary_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/thread_nonstop.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/sgml_entity.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/static_set.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/transmissionrw.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/miscmath.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/mutex_pool.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/ncbi_cache.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/line_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/util_exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/uttp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/multi_writer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/itransaction.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/thread_pool.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/thread_pool_ctrl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/scheduler.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/distribution.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/rangelist.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/util_misc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/histogram_binning.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/table_printer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/retry_ctx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/stream_source.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/file_manifest.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/multipattern_search.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/cache_async.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/crc32_sse.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/random_gen.cpp -o random_gen.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/utf8.cpp -o utf8.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/checksum.cpp -o checksum.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/checksum_cityhash.cpp -o checksum_cityhash.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/checksum_farmhash.cpp -o checksum_farmhash.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/bytesrc.cpp -o bytesrc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/strbuffer.cpp -o strbuffer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/itree.cpp -o itree.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/smalldns.cpp -o smalldns.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/thread_pool_old.cpp -o thread_pool_old.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/ddump_viewer.cpp -o ddump_viewer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/strsearch.cpp -o strsearch.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/logrotate.cpp -o logrotate.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-b/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/format_guess.cpp:2828:12: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] return x_IsTruncatedJsonNumber(testString) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ || /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/format_guess.cpp:2828:12: note: cast one or both operands to int to silence this warning 1 warning generated. last-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/format_guess.cpp -o format_guess.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/ascii85.cpp -o ascii85.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/md5.cpp -o md5.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/file_obsolete.cpp -o file_obsolete.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/unicode.cpp -o unicode.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/dictionary.cpp -o dictionary.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/dictionary.cpp:133:12: warning: variable 'count' set but not used [-Wunused-but-set-variable] size_t count = 0; ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/dictionary_util.cpp:730:20: warning: unused function 's_ReplaceEnding' [-Wunused-function] static inline bool s_ReplaceEnding(string& word, ^ 1 warning generated. 17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/dictionary_util.cpp -o dictionary_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c 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-I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/scheduler.cpp -o scheduler.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/distribution.cpp -o distribution.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/rangelist.cpp -o rangelist.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/util_misc.cpp -o util_misc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/histogram_binning.cpp -o histogram_binning.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/table_printer.cpp -o table_printer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/retry_ctx.cpp -o retry_ctx.o /Users/pIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/multipattern_search.cpp:33: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/multipattern_search_impl.hpp:107:105: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CRegXTerm(unique_ptr& x, unsigned int min, unsigned int max, bool lazy = false) : m_RegX(move(x)), m_Min(min), m_Max(max), m_Lazy(lazy) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/multipattern_search_impl.hpp:121:60: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CRegXConcat(vector >& v) : m_Vec(move(v)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/multipattern_search_impl.hpp:132:60: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CRegXSelect(vector >& v) : m_Vec(move(v)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/multipattern_search_impl.hpp:154:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CRegXAssert(EAssert a, unique_ptr& x) : m_Assert(a), m_RegX(move(x)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/multipattern_search.cpp:318:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return move(V[0]); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/multipattern_search.cpp:328:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] V.push_back(move(x)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/multipattern_search.cpp:338:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return move(V[0]); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/multipattern_search.cpp:349:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] V.push_back(move(x)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/multipattern_search.cpp:359:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return move(V[0]); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/cache_async.cpp:283:60: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return new SDeferredWriter(m_ThreadPool, m_Writer, move(meta)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/multipattern_search.cpp:1183:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] w.push_back(move(p)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/multipattern_search.cpp:1188:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] w[i]->Merge(move(w[j])); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/multipattern_search.cpp:1192:11: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] Merge(move(w[0])); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/multipattern_search.cpp:1203:28: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_States.push_back(move(state)); ^ std:: 1 warning generated. 13 warnings generated. bulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/stream_source.cpp -o stream_source.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/file_manifest.cpp -o file_manifest.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/cache_async.cpp -o cache_async.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/multipattern_search.cpp -o multipattern_search.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/crc32_sse.cpp -o crc32_sse.o /bin/rm -f libxutil.a .libxutil.a.stamp ar cr libxutil.a random_gen.o utf8.o checksum.o checksum_cityhash.o checksum_farmhash.o bytesrc.o strbuffer.o itree.o smalldns.o thread_pool_old.o ddump_viewer.o strsearch.o logrotate.o format_guess.o ascii85.o md5.o file_obsolete.o unicode.o dictionary.o dictionary_util.o thread_nonstop.o sgml_entity.o static_set.o transmissionrw.o miscmath.o mutex_pool.o ncbi_cache.o line_reader.o util_exception.o uttp.o multi_writer.o itransaction.o thread_pool.o thread_pool_ctrl.o scheduler.o distribution.o rangelist.o util_misc.o histogram_binning.o table_printer.o retry_ctx.o stream_source.o file_manifest.o cache_async.o multipattern_search.o crc32_sse.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxutil.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxutil.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxutil.a /bin/ln -f .xutil.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xutil.dep gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util' /opt/pkg/bin/gmake -C regexp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo66698 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/regexp' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project regexp due to unmet requirements: LocalPCRE gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/regexp' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/regexp' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/regexp TMPL=regexp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72375 mark-as-disabled gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/regexp' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/regexp' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/regexp' /opt/pkg/bin/gmake -C xregexp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo66698 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp TMPL=xregexp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72482 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72482 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp TMPL=xregexp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72482 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72482 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp TMPL=xregexp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72482 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp/regexp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp/mask_regexp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp/arg_regexp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp/convert_dates_iso8601.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -I/opt/pkg/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp/regexp.cpp -o regexp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -I/opt/pkg/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp/arg_regexp.cpp -o arg_regexp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -I/opt/pkg/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp/mask_regexp.cpp -o mask_regexp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -I/opt/pkg/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp/convert_dates_iso8601.cpp -o convert_dates_iso8601.o /bin/rm -f libxregexp.a .libxregexp.a.stamp ar cr libxregexp.a regexp.o arg_regexp.o mask_regexp.o convert_dates_iso8601.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxregexp.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxregexp.a /bin/ln -f .xregexp.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xregexp.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72482 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp/regexp_template_tester.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/xregexp/regexp_template_tester.cpp -o regexp_template_tester.o /bin/rm -f libxregexp_template_tester.a .libxregexp_template_tester.a.stamp ar cr libxregexp_template_tester.a regexp_template_tester.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp_template_tester.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxregexp_template_tester.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxregexp_template_tester.a /bin/ln -f .xregexp_template_tester.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xregexp_template_tester.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/xregexp' /opt/pkg/bin/gmake -C compress -j3 --jobserver-auth=fifo:/var/tmp//GMfifo66698 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -C bzip2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo73803 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project bzip2 due to unmet requirements: LocalBZ2 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/bzip2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/bzip2 TMPL=bzip2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo73832 mark-as-disabled gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/bzip2' /opt/pkg/bin/gmake -C zlib -j3 --jobserver-auth=fifo:/var/tmp//GMfifo73803 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project zlib due to unmet requirements: LocalZ gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/zlib' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/zlib TMPL=zlib -j3 --jobserver-auth=fifo:/var/tmp//GMfifo73902 mark-as-disabled gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/zlib' /opt/pkg/bin/gmake -C api -j3 --jobserver-auth=fifo:/var/tmp//GMfifo73803 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api TMPL=compress -j3 --jobserver-auth=fifo:/var/tmp//GMfifo73955 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api TMPL=compress -j3 --jobserver-auth=fifo:/var/tmp//GMfifo73955 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api TMPL=compress -j3 --jobserver-auth=fifo:/var/tmp//GMfifo73955 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/compress.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/stream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/streambuf.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/stream_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/bzip2.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/lzo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/zlib.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/zstd.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/reader_zlib.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/tar.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/archive.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/archive_.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/archive_zip.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/compress.cpp -o compress.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/stream.cpp -o stream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/streambuf.cpp -o streambuf.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/stream_util.cpp -o stream_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/bzip2.cpp -o bzip2.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/lzo.cpp -o lzo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/zlib.cpp -o zlib.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/zstd.cpp -o zstd.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/tar.cpp -o tar.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/archive.cpp -o archive.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/archive_.cpp -o archive_.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o /bin/rm -f libxcompress.a .libxcompress.a.stamp ar cr libxcompress.a compress.o stream.o streambuf.o stream_util.o bzip2.o lzo.o zlib.o zstd.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxcompress.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxcompress.a /bin/ln -f .xcompress.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xcompress.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/compress' /opt/pkg/bin/gmake -C diff -j3 --jobserver-auth=fifo:/var/tmp//GMfifo66698 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/diff' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/diff' /opt/pkg/bin/gmake -C image -j3 --jobserver-auth=fifo:/var/tmp//GMfifo66698 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/image' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/image' /opt/pkg/bin/gmake -C tables -j3 --jobserver-auth=fifo:/var/tmp//GMfifo66698 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/tables/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/tables/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/tables/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables/test/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/tables TMPL=tables -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76037 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/tables TMPL=tables -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76037 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/tables TMPL=tables -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76037 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/tables/raw_scoremat.c. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o /bin/rm -f libtables.a .libtables.a.stamp ar cr libtables.a raw_scoremat.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libtables.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libtables.a /bin/ln -f .tables.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.tables.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76037 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables/test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/tables' /opt/pkg/bin/gmake -C sequtil -j3 --jobserver-auth=fifo:/var/tmp//GMfifo66698 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/sequtil' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/sequtil TMPL=sequtil -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76520 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/sequtil' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/sequtil TMPL=sequtil -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76520 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/sequtil' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/sequtil TMPL=sequtil -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76520 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/sequtil/sequtil_convert_imp.hpp:289:30: warning: private field 'm_GapsOK' is not used [-Wunused-private-field] const bool m_GapsOK; ^ gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/sequtil' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/sequtil/sequtil_convert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/sequtil/sequtil.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp. Updating Updating dependency dependency information information for for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/sequtil/sequtil_manip.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/sequtil/sequtil_tables.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/sequtil/sequtil_shared.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/sequtil/sequtil.cpp -o sequtil.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/c1 warning generated. lang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o /bin/rm -f libsequtil.a .libsequtil.a.stamp ar cr libsequtil.a sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libsequtil.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libsequtil.a /bin/ln -f .sequtil.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.sequtil.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/sequtil' /opt/pkg/bin/gmake -C bitset -j3 --jobserver-auth=fifo:/var/tmp//GMfifo66698 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/bitset' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/bitset/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/bitset/demo/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/bitset/demo/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/bitset/demo/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/bitset/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/bitset/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT demo/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/bitset/demo/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/bitset/test/Makefile /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo77117 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/bitset/test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/bitset/test' /opt/pkg/bin/gmake -C demo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo77117 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/bitset/demo' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/bitset/demo' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/bitset' /opt/pkg/bin/gmake -C qparse -j3 --jobserver-auth=fifo:/var/tmp//GMfifo66698 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/qparse' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/qparse' /opt/pkg/bin/gmake -C lmdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo66698 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdb' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project lmdb due to unmet requirements: LocalLMDB gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/LocalLMDB.enabled', needed by 'requirements'. Stop. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdb' NOTE: skipping project "lmdb" due to unmet requirements gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdb' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdb' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdb' /opt/pkg/bin/gmake -C lmdbxx -j3 --jobserver-auth=fifo:/var/tmp//GMfifo66698 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdbxx' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/lmdbxx TMPL=lmdbxx_sample -j3 --jobserver-auth=fifo:/var/tmp//GMfifo77601 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdbxx' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/lmdbxx TMPL=lmdbxx_sample -j3 --jobserver-auth=fifo:/var/tmp//GMfifo77601 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdbxx' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/lmdbxx/example.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/lmdbxx -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=lmdbxx_sample -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/lmdbxx/example.cpp -o example.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O example.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lxncbi -llmdb -lpthread -lm -Wl,-framework,ApplicationServices -lpthread -o lmdbxx_sample strip lmdbxx_sample /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f lmdbxx_sample /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f lmdbxx_sample /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/lmdbxx_sample gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/lmdbxx' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo66698 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/test' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/test' /opt/pkg/bin/gmake -C demo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo66698 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/demo' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/demo' /opt/pkg/bin/gmake -C profile -j3 --jobserver-auth=fifo:/var/tmp//GMfifo66698 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/profile' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/profile' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/profile TMPL=utrtprof -j3 --jobserver-auth=fifo:/var/tmp//GMfifo77952 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/profile' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/profile TMPL=utrtprof -j3 --jobserver-auth=fifo:/var/tmp//GMfifo77952 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/profile' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/profile TMPL=utrtprof -j3 --jobserver-auth=fifo:/var/tmp//GMfifo77952 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/profile' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/profile/rtprofile.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/util/profile/rtprofile.cpp -o rtprofile.o /bin/rm -f libutrtprof.a .libutrtprof.a.stamp ar cr libutrtprof.a rtprofile.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libutrtprof.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libutrtprof.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libutrtprof.a /bin/ln -f .utrtprof.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.utrtprof.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/profile' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util/profile' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/util' /opt/pkg/bin/gmake -C connect -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56877 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ext/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/daemons/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/test/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/daemons/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/daemons/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ext/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ext/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT daemons/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT ext/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/daemons/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/ext/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect TMPL=connssl -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78540 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect TMPL=connect -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78540 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect TMPL=xxconnect -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78540 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect TMPL=xconnect -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78540 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/LIBUV.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' NOTE: skipping project "xxconnect2" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect TMPL=xthrserv -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78540 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect TMPL=connssl -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78540 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect TMPL=connect -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78540 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect TMPL=xxconnect -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78540 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect TMPL=xconnect -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78540 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/LIBUV.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' NOTE: skipping project "xxconnect2" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect TMPL=xthrserv -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78540 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect TMPL=connssl -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78540 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' /bin/mkdir -p mbedtls Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_mbedtls.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_gnutls.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_tls.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/aes.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/aesni.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/arc4.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/aria.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/asn1parse.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/asn1write.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/base64.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/bignum.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/blowfish.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/camellia.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ccm.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/chacha20.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/chachapoly.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/cipher.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/cipher_wrap.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/cmac.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/constant_time.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ctr_drbg.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/des.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/dhm.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ecdh.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ecdsa.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ecjpake.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ecp.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ecp_curves.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/entropy.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/entropy_poll.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/error.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/gcm.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/havege.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/hkdf.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/hmac_drbg.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/md.c. 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/Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/asn1write.c -o mbedtls/asn1write.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os 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-I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/bignum.c -o mbedtls/bignum.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/blowfish.c -o mbedtls/blowfish.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SA/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/bignum.c:1391:29: warning: variable 't' set but not used [-Wunused-but-set-variable] mbedtls_mpi_uint c = 0, t = 0; ^ 1 warning generated. FE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/camellia.c -o mbedtls/camellia.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ccm.c -o mbedtls/ccm.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/chacha20.c -o mbedtls/chacha20.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/chachapoly.c -o mbedtls/chachapoly.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/cipher.c -o mbedtls/cipher.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/cipher_wrap.c -o mbedtls/cipher_wrap.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/cmac.c -o mbedtls/cmac.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/constant_time.c -o mbedtls/constant_time.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ctr_drbg.c -o mbedtls/ctr_drbg.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/des.c -o mbedtls/des.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/dhm.c -o mbedtls/dhm.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ecdh.c -o mbedtls/ecdh.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ecdsa.c -o mbedtls/ecdsa.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include 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/Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/x509_csr.c -o mbedtls/x509_csr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/x509write_crt.c -o mbedtls/x509write_crt.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/x509write_csr.c -o mbedtls/x509write_csr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/debug.c -o mbedtls/debug.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/net_sockets.c -o mbedtls/net_sockets.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ssl_cache.c -o mbedtls/ssl_cache.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ssl_ciphersuites.c -o mbedtls/ssl_ciphersuites.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ssl_cli.c -o mbedtls/ssl_cli.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ssl_cookie.c -o mbedtls/ssl_cookie.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ssl_msg.c -o mbedtls/ssl_msg.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ssl_srv.c -o mbedtls/ssl_srv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 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-I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ssl_tls.c -o mbedtls/ssl_tls.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls/ssl_tls13_keys.c -o mbedtls/ssl_tls13_keys.o /bin/rm -f libconnssl.a .libconnssl.a.stamp ar cr libconnssl.a ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/aria.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/chacha20.o mbedtls/chachapoly.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/constant_time.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hkdf.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/memory_buffer_alloc.o mbedtls/mps_reader.o mbedtls/mps_trace.o mbedtls/nist_kw.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/platform_util.o mbedtls/poly1305.o mbedtls/psa_crypto.o mbedtls/psa_crypto_aead.o mbedtls/psa_crypto_cipher.o mbedtls/psa_crypto_client.o mbedtls/psa_crypto_driver_wrappers.o mbedtls/psa_crypto_ecp.o mbedtls/psa_crypto_hash.o mbedtls/psa_crypto_mac.o mbedtls/psa_crypto_rsa.o mbedtls/psa_crypto_se.o mbedtls/psa_crypto_slot_management.o mbedtls/psa_crypto_storage.o mbedtls/psa_its_file.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/rsa_internal.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_msg.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o mbedtls/ssl_tls13_keys.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnssl.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libconnssl.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libconnssl.a /bin/ln -f .connssl.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.connssl.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect TMPL=connect -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78540 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_lbsmd_stub.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_types.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_ansi_ext.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_priv.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_core.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_util.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_buffer.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_socket.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_connector.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_connection.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_connutil.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_ipv6.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_server_info.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_host_info.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_service.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_sendmail.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_base64.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_heapmgr.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_lb.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_socket_connector.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_file_connector.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_http_connector.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_memory_connector.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_service_connector.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_ftp_connector.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_version.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_iprange.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_local.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_dispd.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_lbos.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_linkerd.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_namerd.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/parson.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_localip.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_lbdns.c. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_lbsmd_stub.c -o ncbi_lbsmd_stub.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 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-D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_types.c -o ncbi_types.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_core.c -o ncbi_core.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_priv.c -o ncbi_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_util.c -o ncbi_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_buffer.c -o ncbi_buffer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_socket.c -o ncbi_socket.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_connector.c -o ncbi_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-bl/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_socket.c:2982:14: warning: variable 'error' is used uninitialized whenever '&&' condition is false [-Wsometimes-uninitialized] (x_read < 0 && ((error = SOCK_ERRNO) == SOCK_ENOTCONN || /*NCBI_FAKE_WARNING*/ ^~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_socket.c:3019:13: note: uninitialized use occurs here if (error == SOCK_EWOULDBLOCK || error == SOCK_EAGAIN) { ^~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_socket.c:2982:14: note: remove the '&&' if its condition is always true (x_read < 0 && ((error = SOCK_ERRNO) == SOCK_ENOTCONN || /*NCBI_FAKE_WARNING*/ ^~~~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_socket.c:2973:18: note: initialize the variable 'error' to silence this warning int error; ^ = 0 1 warning generated. ast-2.14.0+-src/c++/src/connect/ncbi_connection.c -o ncbi_connection.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_connutil.c -o ncbi_connutil.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_ipv6.c -o ncbi_ipv6.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_server_info.c -o ncbi_server_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_host_info.c -o ncbi_host_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_service.c -o ncbi_service.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_sendmail.c -o ncbi_sendmail.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_base64.c -o ncbi_base64.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe 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-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_lbdns.c -o ncbi_lbdns.o /bin/rm -f libconnect.a .libconnect.a.stamp ar cr libconnect.a ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_types.o ncbi_core.o ncbi_priv.o ncbi_util.o ncbi_buffer.o ncbi_socket.o ncbi_connector.o ncbi_connection.o ncbi_connutil.o ncbi_ipv6.o ncbi_server_info.o ncbi_host_info.o ncbi_service.o ncbi_sendmail.o ncbi_base64.o ncbi_heapmgr.o ncbi_lb.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_version.o ncbi_iprange.o ncbi_local.o ncbi_dispd.o ncbi_lbos.o ncbi_linkerd.o ncbi_namerd.o parson.o ncbi_localip.o ncbi_lbdns.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnect.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libconnect.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libconnect.a /bin/ln -f .connect.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.connect.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect TMPL=xxconnect -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78540 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_socket_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/email_diag_handler.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_core_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_conn_streambuf.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_conn_stream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_conn_test.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_namedpipe.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_misc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_namedpipe_connector.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_pipe.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_pipe_connector.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_conn_reader_writer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_userhost.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_http_session.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_lbos_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_monkey.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_service_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_localip_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_blowfish.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_usage_report.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/connect_misc.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_socket_cxx.cpp -o ncbi_socket_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_core_cxx.cpp -o ncbi_core_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/email_diag_handler.cpp -o email_diag_handler.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_conn_streambuf.cpp -o ncbi_conn_streambuf.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_conn_stream.cpp -o ncbi_conn_stream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_conn_test.cpp -o ncbi_conn_test.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_misc.cpp -o ncbi_misc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_namedpipe.cpp -o ncbi_namedpipe.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_namedpipe_connector.cpp -o ncbi_namedpipe_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_pipe.cpp -o ncbi_pipe.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_pipe_connector.cpp -o ncbi_pipe_connector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_conn_reader_writer.cpp -o ncbi_conn_reader_writer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_userhost.cpp -o ncbi_userhost.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_http_session.cpp -o ncbi_http_session.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_lbos_cxx.cpp -o ncbi_lbos_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_http_session.cpp:41: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_http_session.cpp:471:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stream(move(stream)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_http_session.cpp:514:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_StatusText = move(status_text); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_http_session.cpp:791:30: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Response->x_Update(move(headers), status_code, move(status_text)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_http_session.cpp:791:58: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Response->x_Update(move(headers), status_code, move(status_text)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_http_session.cpp:925:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stream = move(stream); ^ std:: UNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_monkey.cpp -o ncbi_monkey.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_service_cxx.cpp -o ncbi_service_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_localip_cxx.cpp -o ncbi_localip_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_blowfish.c -o ncbi_blowfish.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_usage_report.cpp -o ncbi_usage_report.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++9 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/connect_misc.cpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/connect_misc.cpp:129:47: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CServiceDiscovery::TServer server(move(address), 1.0); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/connect_misc.cpp:130:64: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return make_shared(1, move(server)); ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/ncbi_usage_report.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 4 warnings generated. 6 warnings generated. /src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/connect_misc.cpp -o connect_misc.o /bin/rm -f libxxconnect.a .libxxconnect.a.stamp ar cr libxxconnect.a ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_lbos_cxx.o ncbi_monkey.o ncbi_service_cxx.o ncbi_localip_cxx.o ncbi_blowfish.o ncbi_usage_report.o connect_misc.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/aria.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/chacha20.o mbedtls/chachapoly.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/constant_time.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hkdf.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/memory_buffer_alloc.o mbedtls/mps_reader.o mbedtls/mps_trace.o mbedtls/nist_kw.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/platform_util.o mbedtls/poly1305.o mbedtls/psa_crypto.o mbedtls/psa_crypto_aead.o mbedtls/psa_crypto_cipher.o mbedtls/psa_crypto_client.o mbedtls/psa_crypto_driver_wrappers.o mbedtls/psa_crypto_ecp.o mbedtls/psa_crypto_hash.o mbedtls/psa_crypto_mac.o mbedtls/psa_crypto_rsa.o mbedtls/psa_crypto_se.o mbedtls/psa_crypto_slot_management.o mbedtls/psa_crypto_storage.o mbedtls/psa_its_file.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/rsa_internal.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_msg.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o mbedtls/ssl_tls13_keys.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxxconnect.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxxconnect.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxxconnect.a /bin/ln -f .xxconnect.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xxconnect.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect TMPL=xconnect -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78540 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' /bin/rm -f libxconnect.a .libxconnect.a.stamp ar cr libxconnect.a ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_types.o ncbi_core.o ncbi_priv.o ncbi_util.o ncbi_buffer.o ncbi_socket.o ncbi_connector.o ncbi_connection.o ncbi_connutil.o ncbi_ipv6.o ncbi_server_info.o ncbi_host_info.o ncbi_service.o ncbi_sendmail.o ncbi_base64.o ncbi_heapmgr.o ncbi_lb.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_version.o ncbi_iprange.o ncbi_local.o ncbi_dispd.o ncbi_lbos.o ncbi_linkerd.o ncbi_namerd.o parson.o ncbi_localip.o ncbi_lbdns.o ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_lbos_cxx.o ncbi_monkey.o ncbi_service_cxx.o ncbi_localip_cxx.o ncbi_blowfish.o ncbi_usage_report.o connect_misc.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/aria.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/chacha20.o mbedtls/chachapoly.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/constant_time.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hkdf.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/memory_buffer_alloc.o mbedtls/mps_reader.o mbedtls/mps_trace.o mbedtls/nist_kw.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/platform_util.o mbedtls/poly1305.o mbedtls/psa_crypto.o mbedtls/psa_crypto_aead.o mbedtls/psa_crypto_cipher.o mbedtls/psa_crypto_client.o mbedtls/psa_crypto_driver_wrappers.o mbedtls/psa_crypto_ecp.o mbedtls/psa_crypto_hash.o mbedtls/psa_crypto_mac.o mbedtls/psa_crypto_rsa.o mbedtls/psa_crypto_se.o mbedtls/psa_crypto_slot_management.o mbedtls/psa_crypto_storage.o mbedtls/psa_its_file.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/rsa_internal.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_msg.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o mbedtls/ssl_tls13_keys.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnect.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxconnect.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxconnect.a /bin/ln -f .xconnect.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xconnect.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/LIBUV.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' NOTE: skipping project "xxconnect2" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect TMPL=xthrserv -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78540 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/threaded_server.cpp:47:20: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] CSocketRequest(CThreadedServer& server, SOCK sock) // NCBI_FAKE_WARNING ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/threaded_server.hpp:77:1: note: 'CThreadedServer' has been explicitly marked deprecated here NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbimisc.hpp:1203:31: note: expanded from macro 'NCBI_DEPRECATED_CLASS' #define NCBI_DEPRECATED_CLASS NCBI_DEPRECATED_CTOR(class) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbimisc.hpp:1197:43: note: expanded from macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/threaded_server.cpp:52:5: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] CThreadedServer& m_Server; // NCBI_FAKE_WARNING ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/threaded_server.hpp:77:1: note: 'CThreadedServer' has been explicitly marked deprecated here NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbimisc.hpp:1203:31: note: expanded from macro 'NCBI_DEPRECATED_CLASS' #define NCBI_DEPRECATED_CLASS NCBI_DEPRECATED_CTOR(class) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbimisc.hpp:1197:43: note: expanded from macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/server_monitor.cpp. Updating Updating dependency dependency information for information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/threaded_server.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/server.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/connection_pool.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/threaded_server.cpp -o threaded_server.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/server.cpp -o server.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/server_monitor.cpp -o server_monitor.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/connection_pool.cpp -o connection_pool.o /bin/rm -f libxthrserv.a .libxthrserv.a.stamp ar cr libxthrserv.a threaded_server.o server.o server_monitor.o connection_pool.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxthrserv.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxthrserv.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxthrserv.a /bin/ln -f .xthrserv.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xthrserv.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -C services -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78467 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services/test/Makefile gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services TMPL=xconnserv -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89365 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89365 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89365 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services TMPL=xconnserv -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89365 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89365 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89365 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services TMPL=xconnserv -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89365 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_worker.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_worker_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/ns_client_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_client_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_commit_thread.cpp. Updating dependency information for Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_main_loop.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_cleanup.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_offline_mode.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_globals.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_control_thread.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_rw_impl.cpp. Updating Updating dependency dependency information for information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/remote_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_params.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_submitter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_executor.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_admin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_getjob.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_key.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_expt.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_key.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_rw.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_params.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_api.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_api_admin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_search.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_protocol_parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/clparser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/json_over_uttp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorage.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorage_rpc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorageobjectloc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorageobjectinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorage_direct_nc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/ns_output_parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/ns_job_serializer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/compound_id.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/compound_id_v0.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_wn_info.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_worker.cpp -o grid_worker.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_worker.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_worker_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_worker_app.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_worker_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/ns_client_factory.cpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/ns_client_factory.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_worker_app.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_worker.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_worker.cpp:595:30: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Masters.insert(move(address)); ^ std:: 5 warnings generated. 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_client_app.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 6 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 4 warnings generated. 5 warnings generated. services/ns_client_factory.cpp -o ns_client_factory.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_worker_app.cpp -o grid_worker_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_client.cpp -o grid_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_client_app.cpp -o grid_client_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_commit_thread.cpp -o wn_commit_thread.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_main_loop.cpp -o wn_main_loop.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-depreIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_commit_thread.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_commit_thread.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_main_loop.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_cleanup.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_cleanup.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_main_loop.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_cleanup.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. 5 warnings generated. 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_offline_mode.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_offline_mode.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_control_thread.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_control_thread.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_globals.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_globals.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 5 warnings generated. 5 warnings generated. cated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_cleanup.cpp -o wn_cleanup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_offline_mode.cpp -o wn_offline_mode.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_control_thread.cpp -o grid_control_thread.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_globals.cpp -o grid_globals.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_rw_impl.cpp -o grid_rw_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/Releas4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_rw_impl.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_rw_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netcache_api.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/remote_app.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_rw_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netcache_api.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_rw_impl.cpp:85:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Writer = move(writer); ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections.cpp:315:15: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Address(move(address)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections.cpp:317:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ThrottleStats(move(throttle_params)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections.cpp:368:14: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] rv = move(args.GetArgs()); ^ std:: 5 warnings generated. 4 warnings generated. 8 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api.cpp:398:60: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] Construct(m_ServerPool->FindOrCreateServerImpl(move(address))); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api.cpp:746:32: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Impl->m_EnforcedServer = move(address); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api.cpp:806:41: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] auto* server = new SNetServerInPool(move(server_address), m_PropCreator(), m_ThrottleParams); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api.cpp:826:72: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] auto* server = FindOrCreateServerImpl(m_EnforcedServer.host == 0 ? move(server_address) : m_EnforcedServer); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api.cpp:835:42: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return m_ServerPool->GetServer(this, move(server_address)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_params.cpp:87:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] auto result = m_SubConfigs.emplace(section, move(sub_config)); ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 10 warnings generated. eMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/remote_app.cpp -o remote_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections.cpp -o srv_connections.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api.cpp -o netservice_api.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_params.cpp -o netservice_params.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api.cpp -o netschedule_api.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_submi1 warning generated. 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_submitter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_submitter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_executor.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_executor.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_reader.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_reader.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_getjob.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_worker_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_admin.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_admin.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_getjob.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_key.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_key.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. tter.cpp -o netschedule_api_submitter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_executor.cpp -o netschedule_api_executor.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_reader.cpp -o netschedule_api_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_admin.cpp -o netschedule_api_admin.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_getjob.cpp -o netschedule_api_getjob.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_key.cpp -o netschedule_key.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/5 warnings generated. 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_rw.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_rw.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_params.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_params.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netcache_api.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 5 warnings generated. opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_expt.cpp -o netschedule_api_expt.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_key.cpp -o netcache_key.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_rw.cpp -o netcache_rw.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_params.cpp -o netcache_params.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_api.cpp -o netcache_api.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/builIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_api.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_api.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_api_admin.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_api_admin.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_search.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_search.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. 5 warnings generated. d/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_api_admin.cpp -o netcache_api_admin.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_search.cpp -o netcache_search.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_protocol_parser.cpp -o netservice_protocol_parser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/util.cpp -o util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/clparser.cpp -o clparser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blas/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/json_over_uttp.cpp:1052:49: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] auto val = standard_json ? NStr::JsonDecode(move(str), &len) : NStr::ParseQuoted(move(str), &len); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/json_over_uttp.cpp:1052:86: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] auto val = standard_json ? NStr::JsonDecode(move(str), &len) : NStr::ParseQuoted(move(str), &len); ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorage.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/impl/netstorage_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netstorage.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 2 warnings generated. 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorageobjectloc.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netstorage.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorage_rpc.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorage_rpc.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorageobjectinfo.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netstorage.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. 4 warnings generated. t-2.14.0+-src/c++/src/connect/services/json_over_uttp.cpp -o json_over_uttp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorage.cpp -o netstorage.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorage_rpc.cpp -o netstorage_rpc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorageobjectloc.cpp -o netstorageobjectloc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorageobjectinfo.cpp -o netstorageobjectinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorage_direct_nc.cpp -o netstorage_direct_nc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorage_direct_nc.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorage_direct_nc.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorage_rpc.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorage_direct_nc.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorage_direct_nc.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netstorage_rpc.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/ns_output_parser.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/ns_output_parser.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 5 warnings generated. 5 warnings generated. 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/ns_job_serializer.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/ns_job_serializer.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_wn_info.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_wn_info.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/ns_output_parser.cpp -o ns_output_parser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/ns_job_serializer.cpp -o ns_job_serializer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/compound_id.cpp -o compound_id.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/compound_id_v0.cpp -o compound_id_v0.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netschedule_api_wn_info.cpp -o netschedule_api_wn_info.o /bin/rm -f libxconnserv.a .libxconnserv.a.stamp ar cr libxconnserv.a grid_worker.o ns_client_factory.o grid_worker_app.o grid_client.o grid_client_app.o wn_commit_thread.o wn_main_loop.o wn_cleanup.o wn_offline_mode.o grid_control_thread.o grid_globals.o grid_rw_impl.o remote_app.o srv_connections.o netservice_api.o netservice_params.o netschedule_api.o netschedule_api_submitter.o netschedule_api_executor.o netschedule_api_reader.o netschedule_api_admin.o netschedule_api_getjob.o netschedule_key.o netschedule_api_expt.o netcache_key.o netcache_rw.o netcache_params.o netcache_api.o netcache_api_admin.o netcache_search.o netservice_protocol_parser.o util.o clparser.o json_over_uttp.o netstorage.o netstorage_rpc.o netstorageobjectloc.o netstorageobjectinfo.o netstorage_direct_nc.o ns_output_parser.o ns_job_serializer.o compound_id.o compound_id_v0.o netschedule_api_wn_info.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnserv.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxconnserv.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxconnserv.a /bin/ln -f .xconnserv.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xconnserv.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89365 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/neticache_client.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/neticache_client.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } ^ std:: 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/neticache_client.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/neticache_client.cpp -o neticache_client.o /bin/rm -f libncbi_xcache_netcache.a .libncbi_xcache_netcache.a.stamp /bin/rm -f libncbi_xcache_netcache-dll.dylib .libncbi_xcache_netcache-dll.dylib.stamp ar cr libncbi_xcache_netcache.a neticache_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xcache_netcache-dll.dylib -o libncbi_xcache_netcache-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress neticache_client.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lxconnserv -lxconnect -lxutil -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_netcache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xcache_netcache.a /bin/ln -f .ncbi_xcache_netcache.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.ncbi_xcache_netcache.dep /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_netcache-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xcache_netcache-dll.dylib /bin/ln -f .ncbi_xcache_netcache-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.ncbi_xcache_netcache-dll.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89365 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/blob_storage_netcache.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/blob_storage_netcache.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netcache_api.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: 4 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/blob_storage_netcache.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/connect/services/blob_storage_netcache.cpp -o blob_storage_netcache.o /bin/rm -f libncbi_xblobstorage_netcache.a .libncbi_xblobstorage_netcache.a.stamp ar cr libncbi_xblobstorage_netcache.a blob_storage_netcache.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xblobstorage_netcache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xblobstorage_netcache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xblobstorage_netcache.a /bin/ln -f .ncbi_xblobstorage_netcache.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.ncbi_xblobstorage_netcache.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89345 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services/test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/services' /opt/pkg/bin/gmake -C ext -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78467 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/ext' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/ext' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78467 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/test' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/test' /opt/pkg/bin/gmake -C daemons -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78467 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/daemons' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect/daemons' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/connect' /opt/pkg/bin/gmake -C cgi -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56877 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi/test/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi TMPL=cgi -j3 --jobserver-auth=fifo:/var/tmp//GMfifo98816 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi TMPL=fcgi -j3 --jobserver-auth=fifo:/var/tmp//GMfifo98816 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/FASTCGIPP.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' NOTE: skipping project "fcgi_mt" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi TMPL=cgi -j3 --jobserver-auth=fifo:/var/tmp//GMfifo98816 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi TMPL=fcgi -j3 --jobserver-auth=fifo:/var/tmp//GMfifo98816 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/FASTCGIPP.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' NOTE: skipping project "fcgi_mt" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi TMPL=cgi -j3 --jobserver-auth=fifo:/var/tmp//GMfifo98816 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/cgiapp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/cgictx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/ncbicgi.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/ncbicgir.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/ncbires.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/ref_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/cgi_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/cgi_run.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/cgi_serial.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/cgi_session.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/cgi_exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/cgiapp_cached.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/cgi_entry_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/user_agent.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/cgiapp.cpp -o cgiapp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/cgictx.cpp -o cgictx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/ncbires.cpp -o ncbires.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/ref_args.cpp -o ref_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/cgi_run.cpp -o cgi_run.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/cgi_util.cpp -o cgi_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/cgi_serial.cpp -o cgi_serial.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/cgi_session.cpp -o cgi_session.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/cgi_exception.cpp -o cgi_exception.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/cgiapp_cached.cpp -o cgiapp_cached.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/user_agent.cpp -o user_agent.o /bin/rm -f libxcgi.a .libxcgi.a.stamp ar cr libxcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxcgi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxcgi.a /bin/ln -f .xcgi.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xcgi.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi TMPL=fcgi -j3 --jobserver-auth=fifo:/var/tmp//GMfifo98816 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/fcgi_run.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_XFCGI_EXPORTS -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/cgi/fcgi_run.cpp -o fcgi_run.o /bin/rm -f libxfcgi.a .libxfcgi.a.stamp ar cr libxfcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_util.o cgi_serial.o fcgi_run.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxfcgi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxfcgi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxfcgi.a /bin/ln -f .xfcgi.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xfcgi.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/FASTCGIPP.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' NOTE: skipping project "fcgi_mt" due to unmet requirements gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo98794 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi/test' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi/test' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/cgi' /opt/pkg/bin/gmake -C html -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56877 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/demo/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/demo/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/demo/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT demo/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html/demo/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html/test/Makefile gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html TMPL=html -j3 --jobserver-auth=fifo:/var/tmp//GMfifo3515 export-headers gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html TMPL=html -j3 --jobserver-auth=fifo:/var/tmp//GMfifo3515 flag-stamps gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html TMPL=html -j3 --jobserver-auth=fifo:/var/tmp//GMfifo3515 all gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/html.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/node.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/htmlhelper.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/page.cpp. Updating dependency information Updating dependency for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/pager.cpp. information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/selection.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/commentdiag.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/components.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/indentstream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/writer_htmlenc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/html_exception.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/node.cpp -o node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/html.cpp -o html.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/htmlhelper.cpp -o htmlhelper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/page.cpp -o page.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/pager.cpp -o pager.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/selection.cpp -o selection.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/components.cpp -o components.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/commentdiag.cpp -o commentdiag.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/indentstream.cpp -o indentstream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/html_exception.cpp -o html_exception.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o /bin/rm -f libxhtml.a .libxhtml.a.stamp ar cr libxhtml.a node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxhtml.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxhtml.a /bin/ln -f .xhtml.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xhtml.dep gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo3515 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html/test' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html/test' /opt/pkg/bin/gmake -C demo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo3515 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html/demo' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html/demo' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/html' /opt/pkg/bin/gmake -C build-system -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56877 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -C helpers -j3 --jobserver-auth=fifo:/var/tmp//GMfifo5522 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/helpers' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/helpers' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/helpers' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/helpers' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/helpers' /opt/pkg/bin/gmake[3] (Makefile.run_with_lock.app): Nothing to be done for `flag-stamps'. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/helpers' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/helpers' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/helpers' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/helpers' /opt/pkg/bin/gmake[3] (Makefile.run_with_lock.app): Nothing to be done for `all'. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/helpers' /opt/pkg/bin/gmake -C project_tree_builder -j3 --jobserver-auth=fifo:/var/tmp//GMfifo5522 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -j3 --jobserver-auth=fifo:/var/tmp//GMfifo5638 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -j3 --jobserver-auth=fifo:/var/tmp//GMfifo5638 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/file_contents.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/proj_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/resolver.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/file_contents.cpp -o file_contents.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp -o msvc_configure.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp -o msvc_makefile.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include 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-I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp -o msvc_prj_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp -o msvc_project_context.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp -o msvc_site.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp -o msvc_sln_generator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp -o proj_builder_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp -o proj_datatool_generated_src.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/proj_item.cpp -o proj_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp -o proj_tree.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp -o proj_tree_builder.o 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-DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp -o proj_projects.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp -o msvc_dlls_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp -o msvc_prj_files_collector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp -o configurable_file.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp -o ptb_gui.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp -o ptb_registry.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp -o mac_prj_generator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp -o prj_file_collector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -Wl,-rpath,/opt/pkg/lib -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O file_contents.o msvc_configure.o msvc_makefile.o msvc_masterproject_generator.o msvc_prj_generator.o msvc_prj_utils.o msvc_project_context.o msvc_site.o msvc_sln_generator.o proj_builder_app.o proj_datatool_generated_src.o proj_item.o proj_tree.o proj_tree_builder.o proj_src_resolver.o proj_utils.o resolver.o msvc_configure_prj_generator.o proj_projects.o msvc_dlls_info.o msvc_prj_files_collector.o configurable_file.o ptb_gui.o ptb_registry.o mac_prj_generator.o prj_file_collector.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lxutil -lxncbi -lxregexp -L/opt/pkg/lib -lpcre -lm -Wl,-framework,ApplicationServices -lpthread -o project_tree_builder strip project_tree_builder /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f project_tree_builder /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f project_tree_builder /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/project_tree_builder gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /opt/pkg/bin/gmake -C msbuild -j3 --jobserver-auth=fifo:/var/tmp//GMfifo5638 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project msbuild due to unmet requirements: MSWin gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj -j3 --jobserver-auth=fifo:/var/tmp//GMfifo11306 mark-as-disabled gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/build-system' /opt/pkg/bin/gmake -C serial -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56877 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/soap/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/soap/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/soap/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT soap/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/soap/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/test/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial TMPL=serial -j3 --jobserver-auth=fifo:/var/tmp//GMfifo11418 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial TMPL=cserial -j3 --jobserver-auth=fifo:/var/tmp//GMfifo11418 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial TMPL=serial -j3 --jobserver-auth=fifo:/var/tmp//GMfifo11418 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial TMPL=cserial -j3 --jobserver-auth=fifo:/var/tmp//GMfifo11418 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial TMPL=serial -j3 --jobserver-auth=fifo:/var/tmp//GMfifo11418 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/hookdata.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/hookdatakey.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/typeinfo.cpp. Updating Updating dependency dependency information information for for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objectinfo.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objectiter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objectio.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/typeref.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/typemap.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/enumerated.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/ptrinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/autoptrinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/continfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stltypes.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/memberid.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/memberlist.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/classinfob.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/member.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/classinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/variant.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/choice.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/choiceptr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/aliasinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objostr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objistr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objcopy.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/iterator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/serial.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/delaybuf.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/pack_string.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objhook.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objlist.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objstack.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objostrasn.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objistrasn.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objostrasnb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objistrasnb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objostrxml.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objistrxml.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objostrjson.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objistrjson.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/serializable.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/serialobject.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/pathhook.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/rpcbase.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/hookdata.cpp -o hookdata.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/hookdatakey.cpp -o hookdatakey.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/pIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/typeinfo.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objectinfo.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objectiter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectiter.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objectiter.cpp:35: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectiter.hpp:578:18: warning: private field 'm_VariantIndex' is not used [-Wunused-private-field] TMemberIndex m_VariantIndex; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objectio.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectio.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectiter.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 1 warning generated. ython3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/typeinfo.cpp -o typeinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objectinfo.cpp -o objectinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objectiter.cpp -o objectiter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objectio.cpp -o objectio.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/typeref.cpp -o typeref.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/srcIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/typeref.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypesimpl.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/enumerated.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/enumerated.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:99:57: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here info->SetIOFunctions(&Read, &Write, &Copy, &Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:556:43: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::SetIOFunctions' requested here CPrimitiveTypeFunctions::SetIOFunctions(this); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:99:57: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here info->SetIOFunctions(&Read, &Write, &Copy, &Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:651:43: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::SetIOFunctions' requested here CPrimitiveTypeFunctions::SetIOFunctions(this); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:969:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(signed char) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:970:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(unsigned char) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:971:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(short) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:972:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(unsigned short) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:973:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(int) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:974:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(unsigned) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:976:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(long) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:977:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(unsigned long) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:979:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(Int8) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/ptrinfo.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &CParent::Copy, &CParent::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:980:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here DECLARE_STD_INT_TYPE(Uint8) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:99:57: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here info->SetIOFunctions(&Read, &Write, &Copy, &Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:1026:43: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::SetIOFunctions' requested here CPrimitiveTypeFunctions::SetIOFunctions(this); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:99:57: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here info->SetIOFunctions(&Read, &Write, &Copy, &Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:1056:43: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::SetIOFunctions' requested here CPrimitiveTypeFunctions::SetIOFunctions(this); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:99:57: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here info->SetIOFunctions(&Read, &Write, &Copy, &Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:1092:43: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::SetIOFunctions' requested here CPrimitiveTypeFunctions::SetIOFunctions(this); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:1404:52: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &TFunctions::Copy, &TFunctions::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:1449:16: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoCharPtr::CPrimitiveTypeInfoCharPtr' requested here return new CPrimitiveTypeInfoCharPtr(); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] in.SkipStd(data); ^~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:1404:52: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here &TFunctions::Copy, &TFunctions::Skip); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp:1460:16: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoCharPtr::CPrimitiveTypeInfoCharPtr' requested here return new CPrimitiveTypeInfoCharPtr(); ^ 1 warning generated. 1 warning generated. 18 warnings generated. /serial/typemap.cpp -o typemap.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stdtypes.cpp -o stdtypes.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/enumerated.cpp -o enumerated.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/ptrinfo.cpp -o ptrinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/autoptrinfo.cpp -o autoptrinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/continfo.cpp -o continfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/incluIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/autoptrinfo.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/continfo.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stltypes.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/memberlist.cpp:298:26: warning: unused variable 'id' [-Wunused-variable] const CMemberId& id = info->GetId(); ^ de/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/stltypes.cpp -o stltypes.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/memberid.cpp -o memberid.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/memberlist.cpp -o memberlist.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/item.cpp -o item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/classinfob.cpp -o classinfob.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/s1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/classinfob.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/member.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/classinfo.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/variant.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/choiceptr.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/choiceptr.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/choice.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. erial/member.cpp -o member.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/classinfo.cpp -o classinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/variant.cpp -o variant.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/choice.cpp -o choice.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/choiceptr.cpp -o choiceptr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/aliasinfo.cpp -o aliasinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/aliasinfo.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objistr.cpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objostr.cpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objcopy.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objcopy.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/iterator.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectiter.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objistr.cpp -o objistr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objostr.cpp -o objostr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objcopy.cpp -o objcopy.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/iterator.cpp -o iterator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/serial.cpp -o serial.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/delaybuf.cpp -o 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/serial.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/delaybuf.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/pack_string.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/pack_string.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/exception.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objhook.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. delaybuf.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/pack_string.cpp -o pack_string.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/exception.cpp -o exception.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objhook.cpp -o objhook.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objlist.cpp -o objlist.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objstack.cpp -o objstack.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REEIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objostrasn.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostrasn.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objistrasn.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistrasn.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objostrasnb.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostrasnb.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. NTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objostrasn.cpp -o objostrasn.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objistrasn.cpp -o objistrasn.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objostrasnb.cpp -o objostrasnb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objistrasnb.cpp -o objistrasnb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objostrxml.cpp -o objostrxml.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objistrasnb.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistrasnb.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objostrxml.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostrxml.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objistrxml.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistrxml.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objostrjson.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostrjson.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objistrjson.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistrjson.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. ial/objistrxml.cpp -o objistrxml.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objostrjson.cpp -o objostrjson.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/objistrjson.cpp -o objistrjson.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/serializable.cpp -o serializable.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/serialobject.cpp -o serialobject.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/pathhook.cpp -o pathhook.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/inIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/serialobject.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/rpcbase.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/rpcbase_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. clude -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/rpcbase.cpp -o rpcbase.o /bin/rm -f libxser.a .libxser.a.stamp ar cr libxser.a hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o rpcbase.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxser.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxser.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxser.a /bin/ln -f .xser.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xser.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial TMPL=cserial -j3 --jobserver-auth=fifo:/var/tmp//GMfifo11418 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. warning: /Library/Developer/CommandLineTools/usr/bin/ranlib: archive library: libxcser.a the table of contents is empty (no object file members in the library define global symbols) gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' Updating Updating dependency dependency information information for for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/serialasn.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/asntypes.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/asntypes.cpp -o asntypes.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/serialasn.cpp -o serialasn.o /bin/rm -f libxcser.a .libxcser.a.stamp ar cr libxcser.a asntypes.o serialasn.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcser.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxcser.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxcser.a /bin/ln -f .xcser.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xcser.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -C datatool -j3 --jobserver-auth=fifo:/var/tmp//GMfifo11379 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/datatool' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/datatool' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool TMPL=datatool -j3 --jobserver-auth=fifo:/var/tmp//GMfifo21549 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/datatool' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool TMPL=datatool -j3 --jobserver-auth=fifo:/var/tmp//GMfifo21549 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/datatool' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/type.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/datatool.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/namespace.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/statictype.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/enumtype.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/reftype.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/unitype.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/blocktype.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/choicetype.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/typestr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/ptrstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/stdstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/classstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/enumstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/stlstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/choicestr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/choiceptrstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/value.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/mcontainer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/module.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/moduleset.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/generate.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/filecode.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/code.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/fileutil.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/alexer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/aparser.cpp. Updating dependency information for Updating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/lexer.cpp. dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/exceptions.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/comments.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/srcutil.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/dtdaux.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/dtdlexer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/dtdparser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/rpcgen.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/aliasstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/xsdlexer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/xsdparser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/wsdllexer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/wsdlparser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/wsdlstr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/jsdlexer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/jsdparser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/traversal_pattern_match_callback.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/traversal_merger.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/traversal_code_generator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/traversal_node.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/datatool.cpp -o datatool.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/datatool.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/statictype.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/enumtype.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/enumerated.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/type.cpp -o type.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/namespace.cpp -o namespace.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/statictype.cpp -o statictype.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/enumtype.cpp -o enumtype.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/reftype.cpp -o reftype.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/reftype.cpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/unitype.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/unitype.cpp -o unitype.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/blocktype.cpp -o blocktype.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/choicetype.cpp -o choicetype.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/typestr.cpp -o typestr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/ptrstr.cpp -o ptrstr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/stdstr.cpp -o stdstr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/classstr.cpp -o classstr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/enumstr.cpp -o enumstr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/stlstr.cpp -o stlstr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/choicestr.cpp -o choicestr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/choiceptrstr.cpp -o choiceptrstr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/value.cpp -o value.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/mcontainer.cpp -o mcontainer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/filecode.cpp -o filecode.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/code.cpp -o code.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall 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-D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/traversal_code_generator.cpp -o traversal_code_generator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/traversal_merger.cpp -o traversal_merger.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/traversal_node.cpp -o traversal_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp -o traversal_spec_file_parser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o jsdlexer.o jsdparser.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o traversal_spec_file_parser.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lxser -lxutil -lxncbi -lm -Wl,-framework,ApplicationServices -lpthread -o datatool strip datatool /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f datatool /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f datatool /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/datatool' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/datatool' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo11379 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/test' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/test' /opt/pkg/bin/gmake -C soap -j3 --jobserver-auth=fifo:/var/tmp//GMfifo11379 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/soap' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/soap' /opt/pkg/bin/gmake -C grpc_integration -j3 --jobserver-auth=fifo:/var/tmp//GMfifo11379 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/grpc_integration' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/grpc_integration TMPL=grpc_integration -j3 --jobserver-auth=fifo:/var/tmp//GMfifo29140 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/grpc_integration' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/grpc_integration TMPL=grpc_integration -j3 --jobserver-auth=fifo:/var/tmp//GMfifo29140 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/grpc_integration' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/grpc_integration TMPL=grpc_integration -j3 --jobserver-auth=fifo:/var/tmp//GMfifo29140 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/grpc_integration' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/grpc_integration/grpc_integration.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/serial/grpc_integration/grpc_integration.cpp -o grpc_integration.o /bin/rm -f libgrpc_integration.a .libgrpc_integration.a.stamp ar cr libgrpc_integration.a grpc_integration.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgrpc_integration.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libgrpc_integration.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgrpc_integration.a /bin/ln -f .grpc_integration.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.grpc_integration.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/serial' /opt/pkg/bin/gmake -C db -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56877 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/db/bdb/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/db/bdb/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/db/bdb/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT bdb/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/bdb/Makefile /opt/pkg/bin/gmake -C sqlite -j3 --jobserver-auth=fifo:/var/tmp//GMfifo30314 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/sqlite' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/db/sqlite TMPL=sqlitewrapp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo30745 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/sqlite' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/db/sqlite TMPL=sqlitewrapp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo30745 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/sqlite' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/db/sqlite TMPL=sqlitewrapp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo30745 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/sqlite' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/db/sqlite/sqlitewrapp.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/db/sqlite/sqlitewrapp.cpp -o sqlitewrapp.o /bin/rm -f libsqlitewrapp.a .libsqlitewrapp.a.stamp ar cr libsqlitewrapp.a sqlitewrapp.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsqlitewrapp.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libsqlitewrapp.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libsqlitewrapp.a /bin/ln -f .sqlitewrapp.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.sqlitewrapp.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/sqlite' /opt/pkg/bin/gmake -C bdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo30314 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/bdb' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db/bdb' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/db' /opt/pkg/bin/gmake -C dbapi -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56877 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/simple/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/lang_bind/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/simple/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/simple/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/test/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/lang_bind/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/lang_bind/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT lang_bind/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT simple/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/simple/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/lang_bind/Makefile gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi TMPL=dbapi -j3 --jobserver-auth=fifo:/var/tmp//GMfifo31825 export-headers gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi TMPL=dbapi -j3 --jobserver-auth=fifo:/var/tmp//GMfifo31825 flag-stamps gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi TMPL=dbapi -j3 --jobserver-auth=fifo:/var/tmp//GMfifo31825 all gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/active_obj.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/variant.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/dbapi.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver_mgr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/err_handler.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/ds_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/conn_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/stmt_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/rs_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/rsmeta_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/cstmt_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/bytestreambuf.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/blobstream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/bulkinsert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/cursor_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/rw_impl.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/variant.cpp -o variant.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/active_obj.cpp -o active_obj.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/dbapi.cpp -o dbapi.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver_mgr.cpp -o driver_mgr.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/err_handler.cpp -o err_handler.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/ds_impl.cpp -o ds_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/conn_impl.cpp -o conn_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/stmt_impl.cpp -o stmt_impl.o //Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/rs_impl.cpp:261:41: warning: 'GetBlobDescriptor' is deprecated [-Wdeprecated-declarations] var.SetBlobDescriptor(m_rs->GetBlobDescriptor()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/dbapi/driver/public.hpp:541:5: note: 'GetBlobDescriptor' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/rs_impl.cpp:384:45: warning: 'GetBlobDescriptor' is deprecated [-Wdeprecated-declarations] unique_ptr desc(m_rs->GetBlobDescriptor()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/dbapi/driver/public.hpp:541:5: note: 'GetBlobDescriptor' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/bytestreambuf.cpp:142:19: warning: variable 'total' set but not used [-Wunused-but-set-variable] static size_t total = 0; ^ Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/rs_impl.cpp -o rs_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/rsmeta_impl.cpp -o rsmeta_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/cstmt_impl.cpp -o cstmt_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/bytestreambuf.cpp -o bytestreambuf.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/blobstream.cpp -o blobstream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REE1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/blobstream.cpp:85:26: warning: 'SendDataCmd' is deprecated [-Wdeprecated-declarations] ->SetCmd(curCmd->SendDataCmd(item_num, datasize, ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/dbapi/driver/public.hpp:890:5: note: 'SendDataCmd' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/rw_impl.cpp:88:25: warning: 'SendDataCmd' is deprecated [-Wdeprecated-declarations] m_dataCmd = curCmd->SendDataCmd(item_num, datasize, ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/dbapi/driver/public.hpp:890:5: note: 'SendDataCmd' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 1 warning generated. NTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/cursor_impl.cpp -o cursor_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/bulkinsert.cpp -o bulkinsert.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/rw_impl.cpp -o rw_impl.o /bin/rm -f libdbapi.a .libdbapi.a.stamp ar cr libdbapi.a variant.o active_obj.o dbapi.o driver_mgr.o err_handler.o ds_impl.o conn_impl.o stmt_impl.o rs_impl.o rsmeta_impl.o cstmt_impl.o bytestreambuf.o blobstream.o cursor_impl.o bulkinsert.o rw_impl.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi.a /bin/ln -f .dbapi.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.dbapi.dep gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi' /opt/pkg/bin/gmake -C driver -j3 --jobserver-auth=fifo:/var/tmp//GMfifo31825 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/util/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/ctlib/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/ftds100/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/ctlib/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/ctlib/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/util/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/util/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/ftds100/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/ftds100/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/ftds-default/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/mysql/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/samples/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/mysql/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/mysql/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/samples/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/samples/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/ftds-default/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/ftds-default/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT util/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT ctlib/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT ftds100/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/ctlib/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds100/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/util/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT ftds-default/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT mysql/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT samples/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/mysql/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/samples/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver TMPL=dbapi_driver -j3 --jobserver-auth=fifo:/var/tmp//GMfifo36993 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver TMPL=dbapi_driver -j3 --jobserver-auth=fifo:/var/tmp//GMfifo36993 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver TMPL=dbapi_driver -j3 --jobserver-auth=fifo:/var/tmp//GMfifo36993 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/numeric_convert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/handle_stack.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/parameters.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/interfaces.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/public.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/types.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/memory_store.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/pointer_pot.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/driver_mgr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp -o dbapi_conn_factory.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp -o dbapi_svc_mapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp -o dbapi_impl_context.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp -o dbapi_impl_result.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp -o dbapi_driver_conn_params.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp -o dbapi_driver_exception_storage.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp -o dbapi_object_convert.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp -o dbapi_driver_convert.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -fno-inline -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp -o dbapi_pool_balancer.o /bin/rm -f libdbapi_driver.a .libdbapi_driver.a.stamp /bin/rm -f libdbapi_driver-dll.dylib .libdbapi_driver-dll.dylib.stamp ar cr libdbapi_driver.a handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libdbapi_driver-dll.dylib -o libdbapi_driver-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi_driver.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.a /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f .dbapi_driver.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.dbapi_driver.dep /bin/ln -f libdbapi_driver-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver-dll.dylib /bin/ln -f .dbapi_driver-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.dbapi_driver-dll.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver' /opt/pkg/bin/gmake -C util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo36993 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/util' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/util' /opt/pkg/bin/gmake -C ctlib -j3 --jobserver-auth=fifo:/var/tmp//GMfifo36993 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/ctlib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/ctlib' /opt/pkg/bin/gmake -C ftds100 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo36993 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds100' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds100' /opt/pkg/bin/gmake -C ftds-default -j3 --jobserver-auth=fifo:/var/tmp//GMfifo36993 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default' /opt/pkg/bin/gmake -C mysql -j3 --jobserver-auth=fifo:/var/tmp//GMfifo36993 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/mysql' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/mysql' /opt/pkg/bin/gmake -C odbc -j3 --jobserver-auth=fifo:/var/tmp//GMfifo36993 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project odbc due to unmet requirements: ODBC gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/dbapi/driver/odbc TMPL=ncbi_xdbapi_odbc -j3 --jobserver-auth=fifo:/var/tmp//GMfifo42750 mark-as-disabled gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /bin/echo 'Warning: non-existent sub-project "samples"' Warning: non-existent sub-project "samples" gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /opt/pkg/bin/gmake -C samples -j3 --jobserver-auth=fifo:/var/tmp//GMfifo36993 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/samples' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver/samples' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/driver' /opt/pkg/bin/gmake -C simple -j3 --jobserver-auth=fifo:/var/tmp//GMfifo31825 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/simple' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/simple' /opt/pkg/bin/gmake -C lang_bind -j3 --jobserver-auth=fifo:/var/tmp//GMfifo31825 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/lang_bind' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/lang_bind' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo31825 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/test' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi/test' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/dbapi' /opt/pkg/bin/gmake -C objects -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56877 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/Makefile.sources builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43067 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects || exit 2; \ for i in omssa access biblio blast blastdb blastxml blastxml2 cdd cn3d docsum biotree entrez2 entrezgene featdef gbseq general id1 id2 insdseq macro medlars medline mim mla mmdb1 mmdb2 mmdb3 ncbimime objprt proj pub pubmed scoremat seq seqalign seqblock seqcode seqfeat seqloc seqsplit seqres seqset submit taxon1 taxon3 tinyseq pcsubstance pcassay remap homologene seqedit seqtable seqtest trackmgr gbproj valerr valid genesbyloc; do \ if test -f "$i/$i.asn"; then \ MAKE="/opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109"; export MAKE; \ ( cd $i && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh $i all; ) \ || case "-j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109" in *k*) ;; *) exit 2 ;; esac; \ else \ echo "Warning: $i/$i.asn not found (skipping)"; \ fi; \ done /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/omssa' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m omssa.asn -M "objects/seq/seq.asn" -oA \ -oc omssa -or objects/omssa -odi -od omssa.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd omssa.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/omssa' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/access' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m access.asn -M "" -oA \ -oc access -or objects/access -odi -od access.def -oex '' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. \ -ocvs -pch 'ncbi_pch.hpp' -fd access.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/access' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m biblio.asn -M "objects/general/general.asn" -oA \ -oc biblio -or objects/biblio -odi -od biblio.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat/scoremat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA \ -oc blast -or objects/blast -odi -od gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. blast.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blast.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastdb' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA \ -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastdb' File blastxml.module not found. Using defaults... /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m blastxml.asn -M "" -oA \ -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml' File blastxml2.module not found. Using defaults... /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml2' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m blastxml2.asn -M "" -oA \ -oc blastxml2 -or objects/blastxml2 -odi -od blastxml2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastxml2.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml2' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb2/mmdb2.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb3/mmdb3.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d/cn3d.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c+gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. + \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m cdd.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn" -oA \ -oc cdd -or objects/cdd -odi -od cdd.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd cdd.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m cn3d.asn -M "objects/mmdb1/mmdb1.asn" -oA \ -oc cn3d -or objects/cn3d -odi -od cn3d.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd cn3d.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/docsum' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m docsum.asn -M "" -oA \ -oc docsum -or objects/docsum -odi -od docsum.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd docsum.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/docsum' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biogmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. tree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biotree' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m biotree.asn -M "objects/general/general.asn" -oA \ -oc biotree -or objects/biotree -odi -od biotree.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd biotree.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biotree' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m entrez2.asn -M "" -oA \ -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/Releasegmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. MT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m entrezgene.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn" -oA \ -oc entrezgene -or objects/entrezgene -odi -od entrezgene.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd entrezgene.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/featdef' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m featdef.asn -M "" -oA \ -oc featdef -or objects/featdef -odi -od featdef.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd featdef.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/featdef' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbseq' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m gbseq.asn -M "" -oA \ -oc gbseq -or objects/gbseq -odi -od gbseq.def -oex '' \ -gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. ocvs -pch 'ncbi_pch.hpp' -fd gbseq.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbseq' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m general.asn -M "" -oA \ -oc general -or objects/general -odi -od general.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd general.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA \ -oc id1 -or objects/id1 -odi -od id1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. src/objects/seqsplit/seqsplit.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA \ -oc id2 -or objects/id2 -odi -od id2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/insdseq' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m insdseq.asn -M "" -oA \ -oc insdseq -or objects/insdseq -odi -od insdseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd insdseq.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/insdseq' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c+gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. +/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m macro.asn -M "" -oA \ -oc macro -or objects/macro -odi -od macro.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd macro.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ -oc medlars -or objects/medlars -odi -od medlars.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ -oc medline -or objects/medline -odi -od medline.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd megmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. dline.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mim' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m mim.asn -M "" -oA \ -oc mim -or objects/mim -odi -od mim.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mim.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mim' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars/medlars.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed/pubmed.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA \ -oc mla -or objects/mla -odi -od mla.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mla.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Usgmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. ers/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb2/mmdb2.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb1' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m mmdb1.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn" -oA \ -oc mmdb1 -or objects/mmdb1 -odi -od mmdb1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb1.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb1' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb2' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /work/ncbi-blast-2.14.0+-src/c++/src -m mmdb2.asn -M "objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn" -oA \ -oc mmdb2 -or objects/mmdb2 -odi -od mmdb2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb2.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb2' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb3' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m mmdb3.asn -M "objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn" -oA \ -oc mmdb3 -or objects/mmdb3 -odi -od mmdb3.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb3.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb3' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb2/mmdb2.asn gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb3/mmdb3.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d/cn3d.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m ncbimime.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn" -oA \ -oc ncbimime -or objects/ncbimime -odi -od ncbimime.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd ncbimime.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/objprt' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m objprt.asn -M "" -oA \ -oc objprt -or objects/objprt -odi -od objprt.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd objprt.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/objprt' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/sgmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. eqset/seqset' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed/pubmed.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/proj' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m proj.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn" -oA \ -oc proj -or objects/proj -odi -od proj.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd proj.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/proj' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ -oc pub -or objects/pub -odi -od pub.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump \ datatool: gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ -oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA \ -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremagmake[5]: warning: -j3 forced in submake: resetting jobserver mode. t' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqblock/seqblock.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqres/seqres.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA \ -oc seq -or objects/seq -odi -od seq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/gegmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. neral.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqalign' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m seqalign.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqalign -or objects/seqalign -odi -od seqalign.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqalign.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqalign' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqblock' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m seqblock.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqblock -or objects/seqblock -odi -od seqblock.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqblock.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqblock' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ buigmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. lddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqcode' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m seqcode.asn -M "" -oA \ -oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqcode' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m seqfeat.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn" -oA \ -oc seqfeat -or objects/seqfeat -odi -od seqfeat.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqfeat.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbigmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. -blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA \ -oc seqloc -or objects/seqloc -odi -od seqloc.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqloc.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqsplit' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA \ -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. 0+-src/c++/src/objects/seqsplit' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqres' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqres -or objects/seqres -odi -od seqres.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqres' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. 2.14.0+-src/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA \ -oc seqset -or objects/seqset -odi -od seqset.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA \ -oc submit -or objects/submit -odi -od submit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. +-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA \ -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA \ -oc taxon3 -or objects/taxon3 -odi -od taxon3.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd taxon3.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/tinyseq' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m tinyseq.asn -M "" -oA \ -oc tinyseq -or objects/tinyseq -odi -od tinyseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd tinyseq.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/tinyseq' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/bgmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. iology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m pcsubstance.asn -M "objects/general/general.asn objects/pub/pub.asn" -oA \ -oc pcsubstance -or objects/pcsubstance -odi -od pcsubstance.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pcsubstance.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m pcassay.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn" -oA \ -oc pcassay -or objects/pcassay -odi -od pcassay.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pcassay.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/srgmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. c/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m remap.asn -M "objects/seqloc/seqloc.asn" -oA \ -oc remap -or objects/remap -odi -od remap.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd remap.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/homologene' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m homologene.asn -M "objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn" -oA \ -oc homologene -or objects/homologene -odi -od homologene.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd homologene.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/homologene' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/bugmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. ild/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqedit' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA \ -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqedit' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtable' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA \ -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtable' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtest' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m seqtest.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ -oc seqtest -or objects/seqtest -odi -od seqtest.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqtest.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtest' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m trackmgr.asn -M "obWarning: (810.1) No service name provided for CTrackMgrClient gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. jects/seqloc/seqloc.asn objects/general/general.asn" -oA \ -oc trackmgr -or objects/trackmgr -odi -od trackmgr.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd trackmgr.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit/submit.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m gbproj.asn -M "objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn" -oA \ -oc gbproj -or objects/gbproj -odi -od gbproj.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gbproj.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valerr' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/buildgmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m valerr.asn -M "" -oA \ -oc valerr -or objects/valerr -odi -od valerr.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd valerr.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valerr' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valid' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m valid.asn -M "" -oA \ -oc valid -or objects/valid -odi -od valid.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valid' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43109 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genesbyloc' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m genesbyloc.asn -M "" -oA \ -oc genesbyloc -or objects/genesbyloc -odi -od genesbyloc.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd genesbyloc.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genesbyloc' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects' /opt/pkg/bin/gmake -C general -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/unit_test/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT unit_test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general/test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general/unit_test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh general all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo52760 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general TMPL=general -j3 --jobserver-auth=fifo:/var/tmp//GMfifo52760 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general TMPL=general -j3 --jobserver-auth=fifo:/var/tmp//GMfifo52760 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general TMPL=general -j3 --jobserver-auth=fifo:/var/tmp//GMfifo52760 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/Date.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/uoconv.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/uoconv.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/Date_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/uoconv.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general__.cpp -o general__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general___.cpp -o general___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/uoconv.cpp -o uoconv.o /bin/rm -f libgeneral.a .libgeneral.a.stamp ar cr libgeneral.a general__.o general___.o uoconv.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libgeneral.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgeneral.a /bin/ln -f .general.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.general.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo52760 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general/test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general/test' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo52760 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general/unit_test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/general' /opt/pkg/bin/gmake -C biblio -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh biblio all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo55980 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biblio' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio TMPL=biblio -j3 --jobserver-auth=fifo:/var/tmp//GMfifo55980 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biblio' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio TMPL=biblio -j3 --jobserver-auth=fifo:/var/tmp//GMfifo55980 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biblio' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio TMPL=biblio -j3 --jobserver-auth=fifo:/var/tmp//GMfifo55980 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/Affil.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/biblio/Affil.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/biblio/Affil_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/citation_base.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/Affil_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biblio' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/citation_base.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio__.cpp -o biblio__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio___.cpp -o biblio___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/citation_base.cpp -o citation_base.o /bin/rm -f libbiblio.a .libbiblio.a.stamp ar cr libbiblio.a biblio__.o biblio___.o citation_base.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiblio.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libbiblio.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libbiblio.a /bin/ln -f .biblio.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.biblio.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biblio' /opt/pkg/bin/gmake -C medline -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medline' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh medline all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo57871 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medline' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline TMPL=medline -j3 --jobserver-auth=fifo:/var/tmp//GMfifo57871 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medline' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline TMPL=medline -j3 --jobserver-auth=fifo:/var/tmp//GMfifo57871 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medline' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline TMPL=medline -j3 --jobserver-auth=fifo:/var/tmp//GMfifo57871 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/DocRef.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/medline/DocRef.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/medline/DocRef_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/DocRef_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medline' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline__.cpp -o medline__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline___.cpp -o medline___.o /bin/rm -f libmedline.a .libmedline.a.stamp ar cr libmedline.a medline__.o medline___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedline.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libmedline.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libmedline.a /bin/ln -f .medline.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.medline.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medline' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medline' /opt/pkg/bin/gmake -C pub -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pub' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh pub all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59142 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pub' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub TMPL=pub -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59142 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pub' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub TMPL=pub -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59142 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pub' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub TMPL=pub -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59142 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/Pub.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/pub/Pub.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/pub/Pub_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/Pub_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pub' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub__.cpp -o pub__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub___.cpp -o pub___.o /bin/rm -f libpub.a .libpub.a.stamp ar cr libpub.a pub__.o pub___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpub.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libpub.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libpub.a /bin/ln -f .pub.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.pub.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pub' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pub' /opt/pkg/bin/gmake -C seqcode -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqcode && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh seqcode all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo60813 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqcode' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqcode' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqcode' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqcode' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqcode' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqcode TMPL=seqcode -j3 --jobserver-auth=fifo:/var/tmp//GMfifo60813 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqcode' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqcode TMPL=seqcode -j3 --jobserver-auth=fifo:/var/tmp//GMfifo60813 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqcode' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqcode TMPL=seqcode -j3 --jobserver-auth=fifo:/var/tmp//GMfifo60813 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqcode/seqcode__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqcode/Seq_code_set.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqcode/Seq_code_set.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqcode/Seq_code_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqcode/seqcode___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqcode/Seq_code_set_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqcode' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqcode/seqcode__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqcode/seqcode___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o /bin/rm -f libseqcode.a .libseqcode.a.stamp ar cr libseqcode.a seqcode__.o seqcode___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqcode.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libseqcode.a /bin/ln -f .seqcode.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.seqcode.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqcode' /opt/pkg/bin/gmake -C seq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/test/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT unit_test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq/test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq/unit_test/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/Makefile.sources builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo63020 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' status=0 ; \ MAKE="/opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo63074"; \ export MAKE; \ for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \ d=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../$x ; \ (cd $d && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo63074 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqalign' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqalign' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo63074 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqblock' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqblock' /opt/pkg/bin/gmake -gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. j3 --jobserver-auth=fifo:/var/tmp//GMfifo63074 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo63074 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo63074 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqres' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqres' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo63074 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtable' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtable' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh seq all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo62378 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqblock/seqblock.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqres/seqres.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq TMPL=seq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo62378 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq TMPL=seq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo62378 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq TMPL=seq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo62378 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' Updating dependency information for seqalign__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq__.cpp. Updating dependency information for seqblock__.cpp. Updating dependency information for seqfeat__.cpp. Updating dependency information for seqloc__.cpp. Updating dependency information for seqres__.cpp. Updating dependency information for seqtable__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq___.cpp. Updating dependency information for seqalign___.cpp. Updating dependency information for seqblock___.cpp. Updating dependency information for seqfeat___.cpp. Updating dependency information for seqloc___.cpp. Updating dependency information for seqres___.cpp. Updating dependency information for seqtable___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seqport_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_tree.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_mapper.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_align_mapper_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seqlocinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/so_map.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_loc_from_string.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq__.cpp -o seq__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/workIn file included from seqalign__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqalign/Dense_diag.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_diag.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_diag_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/Align_def.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Align_def.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Align_def_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from seqblock__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqblock/seqblock__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqblock/EMBL_block.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqblock/EMBL_block.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqblock/EMBL_block_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq__.cpp:15: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/Linkage_evidence.cpp:97:31: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] temp_vector.push_back(move(new_evid)); ^ std:: In file included from seqalign__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1919:21: warning: variable 'count' set but not used [-Wunused-but-set-variable] size_t count = 0; ^ In file included from seqfeat__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BinomialOrgName.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from seqloc__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqloc/seqloc__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqloc/Giimport_id.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Giimport_id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Giimport_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from seqloc__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqloc/seqloc__.cpp:13: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqloc/Seq_loc.cpp:1728:42: warning: overlapping comparisons always evaluate to true [-Wtautological-overlap-compare] if ( type != CSeq_loc::e_Pnt || type != CSeq_loc::e_Int ) { ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ 2 warnings generated. In file included from seqres__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqres/seqres__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqres/Byte_graph.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqres/Byte_graph.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqres/Byte_graph_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. /ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 seqalign__.cpp -o seqalign__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 seqblock__.cpp -o seqblock__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 seqfeat__.cpp -o seqfeat__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 seqloc__.cpp -o seqloc__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 seqres__.cpp -o seqres__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/buiIn file included from seqtable__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqtable/seqtable__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqtable/BVector_data.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqtable/BVector_data.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqtable/BVector_data_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/Align_def_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from seqalign___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqalign/seqalign___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqalign/Dense_diag_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from seqblock___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqblock/seqblock___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqblock/EMBL_block_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. ld/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 seqtable__.cpp -o seqtable__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq___.cpp -o seq___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 seqalign___.cpp -o seqalign___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 seqblock___.cpp -o seqblock___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 seqfeat___.cpp -o seqfeat___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.1 warning generated. In file included from seqfeat___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqfeat/seqfeat___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from seqloc___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqloc/seqloc___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqloc/Giimport_id_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from seqres___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqres/seqres___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqres/Byte_graph_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from seqtable___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqtable/seqtable___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/../seqtable/BVector_data_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seqport_util.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seqport_util.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_data.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_data_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 seqloc___.cpp -o seqloc___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 seqres___.cpp -o seqres___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 seqtable___.cpp -o seqtable___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seqport_util.cpp -o seqport_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_tree.cpp -o seq_id_tree.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu+1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_tree.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_tree.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_handle.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_tree.cpp:36: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_tree.hpp:469:32: warning: 'GetPackedSeqId' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual CConstRef GetPackedSeqId(TPacked packed, TVariant variant) const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:82:48: note: overridden virtual function is here NCBI_SEQ_EXPORT virtual CConstRef GetPackedSeqId(TPacked packed, TVariant variant) const; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_tree.cpp:36: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_tree.hpp:792:32: warning: 'GetPackedSeqId' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual CConstRef GetPackedSeqId(TPacked packed, TVariant variant) const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:82:48: note: overridden virtual function is here NCBI_SEQ_EXPORT virtual CConstRef GetPackedSeqId(TPacked packed, TVariant variant) const; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_tree.cpp:36: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_tree.hpp:866:32: warning: 'GetPackedSeqId' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual CConstRef GetPackedSeqId(TPacked packed, TVariant variant) const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:82:48: note: overridden virtual function is here NCBI_SEQ_EXPORT virtual CConstRef GetPackedSeqId(TPacked packed, TVariant variant) const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_tree.cpp:1877:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Seq_id = move(seq_id); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_tree.cpp:2416:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Seq_id = move(seq_id); ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_handle.cpp:40: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_tree.hpp:469:32: warning: 'GetPackedSeqId' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual CConstRef GetPackedSeqId(TPacked packed, TVariant variant) const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:82:48: note: overridden virtual function is here NCBI_SEQ_EXPORT virtual CConstRef GetPackedSeqId(TPacked packed, TVariant variant) const; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_handle.cpp:40: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_tree.hpp:792:32: warning: 'GetPackedSeqId' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual CConstRef GetPackedSeqId(TPacked packed, TVariant variant) const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:82:48: note: overridden virtual function is here NCBI_SEQ_EXPORT virtual CConstRef GetPackedSeqId(TPacked packed, TVariant variant) const; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_handle.cpp:40: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_tree.hpp:866:32: warning: 'GetPackedSeqId' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual CConstRef GetPackedSeqId(TPacked packed, TVariant variant) const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:82:48: note: overridden virtual function is here NCBI_SEQ_EXPORT virtual CConstRef GetPackedSeqId(TPacked packed, TVariant variant) const; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_mapper.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_mapper.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_mapper.cpp:36: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_tree.hpp:469:32: warning: 'GetPackedSeqId' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual CConstRef GetPackedSeqId(TPacked packed, TVariant variant) const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:82:48: note: overridden virtual function is here NCBI_SEQ_EXPORT virtual CConstRef GetPackedSeqId(TPacked packed, TVariant variant) const; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_mapper.cpp:36: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_tree.hpp:792:32: warning: 'GetPackedSeqId' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual CConstRef GetPackedSeqId(TPacked packed, TVariant variant) const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:82:48: note: overridden virtual function is here NCBI_SEQ_EXPORT virtual CConstRef GetPackedSeqId(TPacked packed, TVariant variant) const; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_mapper.cpp:36: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_tree.hpp:866:32: warning: 'GetPackedSeqId' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual CConstRef GetPackedSeqId(TPacked packed, TVariant variant) const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:82:48: note: overridden virtual function is here NCBI_SEQ_EXPORT virtual CConstRef GetPackedSeqId(TPacked packed, TVariant variant) const; ^ 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_loc_mapper_base.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_align_mapper_base.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_align_mapper_base.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 6 warnings generated. +17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_handle.cpp -o seq_id_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_id_mapper.cpp -o seq_id_mapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp -o seq_loc_mapper_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_align_mapper_base.cpp -o seq_align_mapper_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seqlocinfo.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seqlocinfo.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/so_map.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:93: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/SeqFeatData_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_loc_from_string.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_loc_from_string.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_loc_reverse_complementer.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. ects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seqlocinfo.cpp -o seqlocinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/so_map.cpp -o so_map.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_loc_from_string.cpp -o seq_loc_from_string.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp -o seq_loc_reverse_complementer.o /bin/rm -f libseq.a .libseq.a.stamp ar cr libseq.a seq__.o seqalign__.o seqblock__.o seqfeat__.o seqloc__.o seqres__.o seqtable__.o seq___.o seqalign___.o seqblock___.o seqfeat___.o seqloc___.o seqres___.o seqtable___.o seqport_util.o seq_id_tree.o seq_id_handle.o seq_id_mapper.o seq_loc_mapper_base.o seq_align_mapper_base.o seqlocinfo.o so_map.o seq_loc_from_string.o seq_loc_reverse_complementer.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libseq.a /bin/ln -f .seq.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.seq.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo62378 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq/test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq/test' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo62378 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq/unit_test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seq' /opt/pkg/bin/gmake -C seqset -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset/test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh seqset all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo75569 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset TMPL=seqset -j3 --jobserver-auth=fifo:/var/tmp//GMfifo75569 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset TMPL=seqset -j3 --jobserver-auth=fifo:/var/tmp//GMfifo75569 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset TMPL=seqset -j3 --jobserver-auth=fifo:/var/tmp//GMfifo75569 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/gb_release_file.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/gb_release_file.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/Bioseq_set.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/Bioseq_set_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/gb_release_file.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset__.cpp -o seqset__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset___.cpp -o seqset___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/gb_release_file.cpp -o gb_release_file.o /bin/rm -f libseqset.a .libseqset.a.stamp ar cr libseqset.a seqset__.o seqset___.o gb_release_file.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqset.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqset.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libseqset.a /bin/ln -f .seqset.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.seqset.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo75569 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset/test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqset' /opt/pkg/bin/gmake -C submit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/submit' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh submit all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78358 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/submit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit TMPL=submit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78358 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/submit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit TMPL=submit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78358 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/submit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit TMPL=submit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78358 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit/submit__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit/Contact_info.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/submit/Contact_info.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/submit/Contact_info_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit/submit___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit/Contact_info_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/submit' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit/submit__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit/submit___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit/submit__.cpp -o submit__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit/submit___.cpp -o submit___.o /bin/rm -f libsubmit.a .libsubmit.a.stamp ar cr libsubmit.a submit__.o submit___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsubmit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libsubmit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libsubmit.a /bin/ln -f .submit.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.submit.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/submit' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/submit' /opt/pkg/bin/gmake -C seqedit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqedit && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh seqedit all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo80026 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqedit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqedit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqedit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqedit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqedit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqedit TMPL=seqedit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo80026 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqedit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqedit TMPL=seqedit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo80026 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqedit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqedit TMPL=seqedit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo80026 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqedit/seqedit__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqedit/SeqEdit_Cmd.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqedit/SeqEdit_Cmd.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqedit/SeqEdit_Cmd_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqedit/seqedit___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqedit/SeqEdit_Cmd_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqedit' Updating Updating dependency dependency information information for for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqedit/seqedit__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqedit/seqedit___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqedit/seqedit__.cpp -o seqedit__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o /bin/rm -f libseqedit.a .libseqedit.a.stamp ar cr libseqedit.a seqedit__.o seqedit___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqedit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqedit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libseqedit.a /bin/ln -f .seqedit.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.seqedit.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqedit' /opt/pkg/bin/gmake -C seqsplit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqsplit && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh seqsplit all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo81375 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqsplit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqsplit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqsplit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqsplit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqsplit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqsplit TMPL=seqsplit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo81375 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqsplit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqsplit TMPL=seqsplit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo81375 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqsplit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqsplit TMPL=seqsplit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo81375 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqsplit/seqsplit__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqsplit/ID2S_Bioseq_Ids.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Bioseq_Ids.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Bioseq_Ids_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqsplit/seqsplit___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqsplit/ID2S_Bioseq_Ids_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqsplit' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqsplit/seqsplit__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqsplit/seqsplit___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqsplit/seqsplit__.cpp -o seqsplit__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqsplit/seqsplit___.cpp -o seqsplit___.o /bin/rm -f libseqsplit.a .libseqsplit.a.stamp ar cr libseqsplit.a seqsplit__.o seqsplit___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqsplit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqsplit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libseqsplit.a /bin/ln -f .seqsplit.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.seqsplit.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqsplit' /opt/pkg/bin/gmake -C id1 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1/test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh id1 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82815 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1 TMPL=id1 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82815 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1 TMPL=id1cli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82815 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1 TMPL=id1 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82815 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1 TMPL=id1cli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82815 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1 TMPL=id1 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82815 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1/id1__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1/Entry_complexities.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/id1/Entry_complexities.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/id1/Entry_complexities_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1/id1___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1/Entry_complexities_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1/id1___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1/id1__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1/id1__.cpp -o id1__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1/id1___.cpp -o id1___.o /bin/rm -f libid1.a .libid1.a.stamp ar cr libid1.a id1__.o id1___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libid1.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libid1.a /bin/ln -f .id1.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.id1.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1 TMPL=id1cli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82815 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1/id1_client.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/id1/id1_client.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/id1/id1_client_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1/id1_client_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' Updating Updating dependency dependency information information for for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1/id1_client.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1/id1_client_.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1/id1_client.cpp -o id1_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id1/id1_client_.cpp -o id1_client_.o /bin/rm -f libid1cli.a .libid1cli.a.stamp ar cr libid1cli.a id1_client.o id1_client_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1cli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libid1cli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libid1cli.a /bin/ln -f .id1cli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.id1cli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82782 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1/test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id1' /opt/pkg/bin/gmake -C id2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh id2 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo85721 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqsplit/seqsplit.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2 TMPL=id2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo85721 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2 TMPL=id2cli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo85721 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2 TMPL=id2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo85721 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2 TMPL=id2cli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo85721 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2 TMPL=id2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo85721 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/id2__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/ID2S_Reply_Get_Chunk.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/id2/ID2S_Reply_Get_Chunk.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/id2/ID2S_Reply_Get_Chunk_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/id2___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/ID2S_Reply_Get_Chunk_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/id2__.cpp:26: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/ID2_Request_Packet.cpp:132:15: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] replies = move(ProcessSomeRequests(packet)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/ID2_Request_Packet.cpp:132:15: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/ID2_Request_Packet.cpp:132:15: note: remove std::move call here replies = move(ProcessSomeRequests(packet)); ^~~~~ ~ 3 warnings generated. 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/id2__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/id2___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/id2__.cpp -o id2__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/id2___.cpp -o id2___.o /bin/rm -f libid2.a .libid2.a.stamp ar cr libid2.a id2__.o id2___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libid2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libid2.a /bin/ln -f .id2.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.id2.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2 TMPL=id2cli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo85721 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/id2_client.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/id2/id2_client.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/id2/id2_client_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/id2_client_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/id2_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/id2_client_.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/id2_client.cpp -o id2_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/id2/id2_client_.cpp -o id2_client_.o /bin/rm -f libid2cli.a .libid2cli.a.stamp ar cr libid2cli.a id2_client.o id2_client_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2cli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libid2cli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libid2cli.a /bin/ln -f .id2cli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.id2cli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/id2' /opt/pkg/bin/gmake -C entrez2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2/demo/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2/demo/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2/demo/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT demo/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2/demo/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh entrez2 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo87705 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2 TMPL=entrez2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo87705 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2 TMPL=entrez2cli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo87705 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2 TMPL=entrez2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo87705 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2 TMPL=entrez2cli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo87705 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2 TMPL=entrez2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo87705 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2/entrez2__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2/E2Reply.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/entrez2/E2Reply.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/entrez2/E2Reply_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2/entrez2___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2/E2Reply_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2/entrez2__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2/entrez2___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2/entrez2__.cpp -o entrez2__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2/entrez2___.cpp -o entrez2___.o /bin/rm -f libentrez2.a .libentrez2.a.stamp ar cr libentrez2.a entrez2__.o entrez2___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libentrez2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libentrez2.a /bin/ln -f .entrez2.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.entrez2.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2 TMPL=entrez2cli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo87705 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2/entrez2_client.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/entrez2/entrez2_client.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/entrez2/entrez2_client_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2/entrez2_client_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2/entrez2_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2/entrez2_client_.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2/entrez2_client.cpp -o entrez2_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrez2/entrez2_client_.cpp -o entrez2_client_.o /bin/rm -f libentrez2cli.a .libentrez2cli.a.stamp ar cr libentrez2cli.a entrez2_client.o entrez2_client_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2cli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libentrez2cli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libentrez2cli.a /bin/ln -f .entrez2cli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.entrez2cli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -C demo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo87675 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2/demo' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2/demo' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrez2' /opt/pkg/bin/gmake -C pubmed -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh pubmed all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89875 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pubmed' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed TMPL=pubmed -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89875 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pubmed' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed TMPL=pubmed -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89875 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pubmed' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed TMPL=pubmed -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89875 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed/pubmed__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed/Pubmed_entry.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/pubmed/Pubmed_entry.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/pubmed/Pubmed_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed/pubmed___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed/Pubmed_entry_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pubmed' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed/pubmed__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed/pubmed___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed/pubmed__.cpp -o pubmed__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed/pubmed___.cpp -o pubmed___.o /bin/rm -f libpubmed.a .libpubmed.a.stamp ar cr libpubmed.a pubmed__.o pubmed___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpubmed.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libpubmed.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libpubmed.a /bin/ln -f .pubmed.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.pubmed.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pubmed' /opt/pkg/bin/gmake -C medlars -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh medlars all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo91186 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medlars' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars TMPL=medlars -j3 --jobserver-auth=fifo:/var/tmp//GMfifo91186 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medlars' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars TMPL=medlars -j3 --jobserver-auth=fifo:/var/tmp//GMfifo91186 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medlars' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars TMPL=medlars -j3 --jobserver-auth=fifo:/var/tmp//GMfifo91186 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars/medlars__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars/Medlars_entry.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/medlars/Medlars_entry.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/medlars/Medlars_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars/medlars___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars/Medlars_entry_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medlars' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars/medlars___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars/medlars__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars/medlars__.cpp -o medlars__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars/medlars___.cpp -o medlars___.o /bin/rm -f libmedlars.a .libmedlars.a.stamp ar cr libmedlars.a medlars__.o medlars___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedlars.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libmedlars.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libmedlars.a /bin/ln -f .medlars.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.medlars.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/medlars' /opt/pkg/bin/gmake -C mla -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh mla all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo92430 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medlars/medlars.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed/pubmed.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla TMPL=mla -j3 --jobserver-auth=fifo:/var/tmp//GMfifo92430 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla TMPL=mlacli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo92430 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla TMPL=mla -j3 --jobserver-auth=fifo:/var/tmp//GMfifo92430 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla TMPL=mlacli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo92430 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla TMPL=mla -j3 --jobserver-auth=fifo:/var/tmp//GMfifo92430 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla/mla__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla/Error_val.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mla/Error_val.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mla/Error_val_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla/mla___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla/Error_val_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla/mla___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla/mla__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla/mla__.cpp -o mla__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla/mla___.cpp -o mla___.o /bin/rm -f libmla.a .libmla.a.stamp ar cr libmla.a mla__.o mla___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmla.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libmla.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libmla.a /bin/ln -f .mla.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.mla.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla TMPL=mlacli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo92430 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla/mla_client.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mla/mla_client.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mla/mla_client_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla/mla_client_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla/mla_client_.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla/mla_client.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla/mla_client.cpp -o mla_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mla/mla_client_.cpp -o mla_client_.o /bin/rm -f libmlacli.a .libmlacli.a.stamp ar cr libmlacli.a mla_client.o mla_client_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmlacli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libmlacli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libmlacli.a /bin/ln -f .mlacli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.mlacli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mla' /opt/pkg/bin/gmake -C proj -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/proj' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/proj && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh proj all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo95262 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pubmed/pubmed.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/proj' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/proj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/proj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/proj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/proj' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/proj TMPL=proj -j3 --jobserver-auth=fifo:/var/tmp//GMfifo95262 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/proj' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/proj TMPL=proj -j3 --jobserver-auth=fifo:/var/tmp//GMfifo95262 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/proj' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/proj TMPL=proj -j3 --jobserver-auth=fifo:/var/tmp//GMfifo95262 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/proj/proj__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/proj/Projdesc.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/proj/Projdesc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/proj/Projdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/proj/proj___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/proj/Projdesc_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/proj' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/proj/proj__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/proj/proj___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/proj/proj__.cpp -o proj__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/proj/proj___.cpp -o proj___.o /bin/rm -f libproj.a .libproj.a.stamp ar cr libproj.a proj__.o proj___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproj.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libproj.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libproj.a /bin/ln -f .proj.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.proj.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/proj' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/proj' /opt/pkg/bin/gmake -C scoremat -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh scoremat all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo96536 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/scoremat' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat TMPL=scoremat -j3 --jobserver-auth=fifo:/var/tmp//GMfifo96536 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/scoremat' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat TMPL=scoremat -j3 --jobserver-auth=fifo:/var/tmp//GMfifo96536 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/scoremat' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat TMPL=scoremat -j3 --jobserver-auth=fifo:/var/tmp//GMfifo96536 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat/scoremat__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat/BlockProperty.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/BlockProperty.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/BlockProperty_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat/scoremat___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat/BlockProperty_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/scoremat' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat/scoremat__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat/scoremat___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat/scoremat__.cpp -o scoremat__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o /bin/rm -f libscoremat.a .libscoremat.a.stamp ar cr libscoremat.a scoremat__.o scoremat___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libscoremat.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libscoremat.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libscoremat.a /bin/ln -f .scoremat.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.scoremat.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/scoremat' /opt/pkg/bin/gmake -C blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh blast all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo98030 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat/scoremat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast TMPL=blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo98030 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast TMPL=xnetblastcli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo98030 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast TMPL=blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo98030 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast TMPL=xnetblastcli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo98030 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast TMPL=blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo98030 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/names.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blast/names.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blast/NCBI_Blast4_module.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/blast__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/Blas_get_searc_resul_reply.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blast/Blas_get_searc_resul_reply.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blast/Blas_get_searc_resul_reply_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/blast___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/Blas_get_searc_resul_reply_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/blast__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/blast___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/names.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/blast__.cpp -o blast__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/blast___.cpp -o blast___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/names.cpp -o names.o /bin/rm -f libxnetblast.a .libxnetblast.a.stamp ar cr libxnetblast.a blast__.o blast___.o names.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxnetblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxnetblast.a /bin/ln -f .xnetblast.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xnetblast.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast TMPL=xnetblastcli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo98030 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/blastclient.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blast/blastclient.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blast/blastclient_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/blastclient_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/blastclient_.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/blastclient.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/blastclient.cpp -o blastclient.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blast/blastclient_.cpp -o blastclient_.o /bin/rm -f libxnetblastcli.a .libxnetblastcli.a.stamp ar cr libxnetblastcli.a blastclient.o blastclient_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblastcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxnetblastcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxnetblastcli.a /bin/ln -f .xnetblastcli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xnetblastcli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blast' /opt/pkg/bin/gmake -C blastdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastdb && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh blastdb all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo2164 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastdb' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastdb TMPL=blastdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo2164 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastdb TMPL=blastdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo2164 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastdb TMPL=blastdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo2164 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastdb/blastdb__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastdb/Blast_db_mask_info.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blastdb/Blast_db_mask_info.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blastdb/Blast_db_mask_info_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastdb/blastdb___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastdb/Blast_db_mask_info_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastdb/blastdb___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastdb/blastdb__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastdb/blastdb__.cpp -o blastdb__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastdb/blastdb___.cpp -o blastdb___.o /bin/rm -f libblastdb.a .libblastdb.a.stamp ar cr libblastdb.a blastdb__.o blastdb___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libblastdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libblastdb.a /bin/ln -f .blastdb.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.blastdb.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastdb' /opt/pkg/bin/gmake -C blastxml -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh blastxml all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4505 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml TMPL=blastxml -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4505 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml TMPL=blastxml -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4505 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml TMPL=blastxml -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4505 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml/blastxml__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml/BlastOutput.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blastxml/BlastOutput.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blastxml/BlastOutput_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml/blastxml___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml/BlastOutput_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml/blastxml__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml/blastxml___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml/blastxml__.cpp -o blastxml__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o /bin/rm -f libblastxml.a .libblastxml.a.stamp ar cr libblastxml.a blastxml__.o blastxml___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libblastxml.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libblastxml.a /bin/ln -f .blastxml.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.blastxml.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml' /opt/pkg/bin/gmake -C blastxml2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml2 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh blastxml2 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo6127 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml2' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo6127 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo6127 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo6127 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml2/blastxml2__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml2/BlastOutput2.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blastxml2/BlastOutput2.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blastxml2/BlastOutput2_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml2/blastxml2___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml2/BlastOutput2_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml2/blastxml2__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml2/blastxml2___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml2/blastxml2__.cpp -o blastxml2__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/blastxml2/blastxml2___.cpp -o blastxml2___.o /bin/rm -f libblastxml2.a .libblastxml2.a.stamp ar cr libblastxml2.a blastxml2__.o blastxml2___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libblastxml2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libblastxml2.a /bin/ln -f .blastxml2.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.blastxml2.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/blastxml2' /opt/pkg/bin/gmake -C mmdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb/Makefile.sources builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo8058 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' status=0 ; \ MAKE="/opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo8106"; \ export MAKE; \ for x in mmdb1 mmdb2 mmdb3; do \ d=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb/../$x ; \ (cd $d && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo8106 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb2/mmdb2.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb1' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb1' /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo8106 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb2' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb2' /opt/gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo8106 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb3' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb3' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb TMPL=mmdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo7945 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb TMPL=mmdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo7945 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb TMPL=mmdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo7945 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from mmdb2__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb/../mmdb2/mmdb2__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb/../mmdb2/Alternate_conformation_id.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mmdb2/Alternate_conformation_id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mmdb2/Alternate_conformation_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from mmdb3__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb/../mmdb3/mmdb3__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb/../mmdb3/Align_stats.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mmdb3/Align_stats.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mmdb3/Align_stats_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from mmdb1__.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb/../mmdb1/mmdb1__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb/../mmdb1/Atom.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mmdb1/Atom.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mmdb1/Atom_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' Updating dependency information for mmdb1__.cpp. Updating dependency information for mmdb3__.cpp. Updating dependency information for mmdb2__.cpp. Updating dependency information for mmdb1___.cpp. Updating dependency information for mmdb2___.cpp. Updating dependency information for mmdb3___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 mmdb1__.cpp -o mmdb1__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 mmdb2__.cpp -o mmdb2__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 mmdb3__.cpp -o mmdb3__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 mmdb1___.cpp -o mmdb1___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+1 warning generated. In file included from mmdb1___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb/../mmdb1/mmdb1___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb/../mmdb1/Atom_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from mmdb2___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb/../mmdb2/mmdb2___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb/../mmdb2/Alternate_conformation_id_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from mmdb3___.cpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb/../mmdb3/mmdb3___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb/../mmdb3/Align_stats_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. -src/c++/src/objects/mmdb -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 mmdb2___.cpp -o mmdb2___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 mmdb3___.cpp -o mmdb3___.o /bin/rm -f libmmdb.a .libmmdb.a.stamp ar cr libmmdb.a mmdb1__.o mmdb2__.o mmdb3__.o mmdb1___.o mmdb2___.o mmdb3___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmmdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libmmdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libmmdb.a /bin/ln -f .mmdb.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.mmdb.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mmdb' /opt/pkg/bin/gmake -C cn3d -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh cn3d all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo11231 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cn3d' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d TMPL=cn3d -j3 --jobserver-auth=fifo:/var/tmp//GMfifo11231 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cn3d' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d TMPL=cn3d -j3 --jobserver-auth=fifo:/var/tmp//GMfifo11231 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cn3d' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d TMPL=cn3d -j3 --jobserver-auth=fifo:/var/tmp//GMfifo11231 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d/cn3d__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d/Cn3d_GL_matrix.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/cn3d/Cn3d_GL_matrix.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/cn3d/Cn3d_GL_matrix_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d/cn3d___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d/Cn3d_GL_matrix_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cn3d' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d/cn3d__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d/cn3d___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d/cn3d__.cpp -o cn3d__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d/cn3d___.cpp -o cn3d___.o /bin/rm -f libcn3d.a .libcn3d.a.stamp ar cr libcn3d.a cn3d__.o cn3d___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcn3d.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libcn3d.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libcn3d.a /bin/ln -f .cn3d.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.cn3d.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cn3d' /opt/pkg/bin/gmake -C cdd -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh cdd all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo12752 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb2/mmdb2.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb3/mmdb3.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d/cn3d.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cdd' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd TMPL=cdd -j3 --jobserver-auth=fifo:/var/tmp//GMfifo12752 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cdd' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd TMPL=cdd -j3 --jobserver-auth=fifo:/var/tmp//GMfifo12752 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cdd' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd TMPL=cdd -j3 --jobserver-auth=fifo:/var/tmp//GMfifo12752 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd/cdd__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd/Algorithm_type.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/cdd/Algorithm_type.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/cdd/Algorithm_type_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd/cdd___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd/Algorithm_type_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cdd' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd/cdd__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd/cdd___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd/cdd__.cpp -o cdd__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd/cdd___.cpp -o cdd___.o /bin/rm -f libcdd.a .libcdd.a.stamp ar cr libcdd.a cdd__.o cdd___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcdd.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libcdd.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libcdd.a /bin/ln -f .cdd.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.cdd.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/cdd' /opt/pkg/bin/gmake -C ncbimime -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime/test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh ncbimime all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo15064 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biblio/biblio.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/medline/medline.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb1/mmdb1.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb2/mmdb2.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mmdb3/mmdb3.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cn3d/cn3d.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime TMPL=ncbimime -j3 --jobserver-auth=fifo:/var/tmp//GMfifo15064 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime TMPL=ncbimime -j3 --jobserver-auth=fifo:/var/tmp//GMfifo15064 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime TMPL=ncbimime -j3 --jobserver-auth=fifo:/var/tmp//GMfifo15064 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime/ncbimime__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime/Biostruc_align.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/ncbimime/Biostruc_align.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/ncbimime/Biostruc_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime/ncbimime___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime/Biostruc_align_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime/ncbimime__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime/ncbimime___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime/ncbimime__.cpp -o ncbimime__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/ncbimime/ncbimime___.cpp -o ncbimime___.o /bin/rm -f libncbimime.a .libncbimime.a.stamp ar cr libncbimime.a ncbimime__.o ncbimime___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbimime.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbimime.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbimime.a /bin/ln -f .ncbimime.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.ncbimime.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo15064 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime/test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/ncbimime' /opt/pkg/bin/gmake -C pcsubstance -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh pcsubstance all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo17833 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcsubstance' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -j3 --jobserver-auth=fifo:/var/tmp//GMfifo17833 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcsubstance' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -j3 --jobserver-auth=fifo:/var/tmp//GMfifo17833 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcsubstance' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -j3 --jobserver-auth=fifo:/var/tmp//GMfifo17833 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance/PC_AtomInt.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/pcsubstance/PC_AtomInt.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/pcsubstance/PC_AtomInt_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance/PC_AtomInt_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcsubstance' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp -o pcsubstance__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp -o pcsubstance___.o /bin/rm -f libpcsubstance.a .libpcsubstance.a.stamp ar cr libpcsubstance.a pcsubstance__.o pcsubstance___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcsubstance.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libpcsubstance.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libpcsubstance.a /bin/ln -f .pcsubstance.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.pcsubstance.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcsubstance' /opt/pkg/bin/gmake -C pcassay -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh pcassay all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20261 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay TMPL=pcassay -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20261 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay TMPL=pcassay -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20261 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay TMPL=pcassay -j3 --jobserver-auth=fifo:/var/tmp//GMfifo20261 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay/pcassay__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay/PC_AnnotatedXRef.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/pcassay/PC_AnnotatedXRef.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/pcassay/PC_AnnotatedXRef_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay/pcassay___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay/PC_AnnotatedXRef_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay' Updating Updating dependency dependency information information for for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay/pcassay__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay/pcassay___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay/pcassay__.cpp -o pcassay__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay/pcassay___.cpp -o pcassay___.o /bin/rm -f libpcassay.a .libpcassay.a.stamp ar cr libpcassay.a pcassay__.o pcassay___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcassay.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libpcassay.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libpcassay.a /bin/ln -f .pcassay.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.pcassay.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay' /opt/pkg/bin/gmake -C pcassay2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay2 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh pcassay2 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo22704 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=pcassay2 MODULE_PATH=objects/pcassay2 MODULE_ASN=pcassay2.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay2' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m pcassay2.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn" -oA \ -oc pcassay2 -or objects/pcassay2 -odi -od pcassay2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pcassay2.dump \ datatool: 2.23.0 gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay2 TMPL=pcassay2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo22704 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay2 TMPL=pcassay2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo22704 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay2 TMPL=pcassay2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo22704 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay2/pcassay2__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay2/PC_AnnotatedXRef.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/pcassay2/PC_AnnotatedXRef.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/pcassay2/PC_AnnotatedXRef_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay2/pcassay2___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay2/PC_AnnotatedXRef_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay2/pcassay2__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay2/pcassay2___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay2/pcassay2__.cpp -o pcassay2__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pcassay2/pcassay2___.cpp -o pcassay2___.o /bin/rm -f libpcassay2.a .libpcassay2.a.stamp ar cr libpcassay2.a pcassay2__.o pcassay2___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcassay2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libpcassay2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libpcassay2.a /bin/ln -f .pcassay2.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.pcassay2.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/pcassay2' /opt/pkg/bin/gmake -C gbseq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbseq && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh gbseq all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24449 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbseq TMPL=gbseq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24449 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbseq TMPL=gbseq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24449 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbseq TMPL=gbseq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24449 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbseq/gbseq__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbseq/GBAltSeqData.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/gbseq/GBAltSeqData.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/gbseq/GBAltSeqData_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbseq/gbseq___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbseq/GBAltSeqData_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbseq' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbseq/gbseq___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbseq/gbseq__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbseq/gbseq__.cpp -o gbseq__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbseq/gbseq___.cpp -o gbseq___.o /bin/rm -f libgbseq.a .libgbseq.a.stamp ar cr libgbseq.a gbseq__.o gbseq___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libgbseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgbseq.a /bin/ln -f .gbseq.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.gbseq.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbseq' /opt/pkg/bin/gmake -C insdseq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/insdseq && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh insdseq all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo26351 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/insdseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/insdseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/insdseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/insdseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/insdseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/insdseq TMPL=insdseq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo26351 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/insdseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/insdseq TMPL=insdseq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo26351 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/insdseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/insdseq TMPL=insdseq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo26351 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/insdseq/insdseq__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/insdseq/INSDAltSeqData.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/insdseq/INSDAltSeqData.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/insdseq/INSDAltSeqData_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/insdseq/insdseq___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/insdseq/INSDAltSeqData_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/insdseq' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/insdseq/insdseq__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/insdseq/insdseq___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/insdseq/insdseq__.cpp -o insdseq__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/insdseq/insdseq___.cpp -o insdseq___.o /bin/rm -f libinsdseq.a .libinsdseq.a.stamp ar cr libinsdseq.a insdseq__.o insdseq___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libinsdseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libinsdseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libinsdseq.a /bin/ln -f .insdseq.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.insdseq.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/insdseq' /opt/pkg/bin/gmake -C tinyseq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/tinyseq && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh tinyseq all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo27564 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/tinyseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/tinyseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/tinyseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/tinyseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/tinyseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/tinyseq TMPL=tinyseq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo27564 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/tinyseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/tinyseq TMPL=tinyseq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo27564 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/tinyseq' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/tinyseq TMPL=tinyseq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo27564 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/tinyseq/tinyseq__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/tinyseq/TSeq.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/tinyseq/TSeq.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/tinyseq/TSeq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/tinyseq/tinyseq___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/tinyseq/TSeq_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/tinyseq' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/tinyseq/tinyseq__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/tinyseq/tinyseq___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/tinyseq/tinyseq__.cpp -o tinyseq__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/tinyseq/tinyseq___.cpp -o tinyseq___.o /bin/rm -f libtinyseq.a .libtinyseq.a.stamp ar cr libtinyseq.a tinyseq__.o tinyseq___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtinyseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libtinyseq.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libtinyseq.a /bin/ln -f .tinyseq.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.tinyseq.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/tinyseq' /opt/pkg/bin/gmake -C biotree -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biotree && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh biotree all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo29517 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biotree' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biotree' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biotree' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biotree' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biotree' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biotree TMPL=biotree -j3 --jobserver-auth=fifo:/var/tmp//GMfifo29517 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biotree' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biotree TMPL=biotree -j3 --jobserver-auth=fifo:/var/tmp//GMfifo29517 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biotree' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biotree TMPL=biotree -j3 --jobserver-auth=fifo:/var/tmp//GMfifo29517 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biotree/biotree__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biotree/BioTreeContainer.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/biotree/BioTreeContainer.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/biotree/BioTreeContainer_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biotree/biotree___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biotree/BioTreeContainer_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biotree' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biotree/biotree__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biotree/biotree___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biotree/biotree__.cpp -o biotree__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/biotree/biotree___.cpp -o biotree___.o /bin/rm -f libbiotree.a .libbiotree.a.stamp ar cr libbiotree.a biotree__.o biotree___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiotree.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libbiotree.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libbiotree.a /bin/ln -f .biotree.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.biotree.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/biotree' /opt/pkg/bin/gmake -C entrezgene -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene/unit_test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh entrezgene all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo31391 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene TMPL=entrezgene -j3 --jobserver-auth=fifo:/var/tmp//GMfifo31391 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene TMPL=entrezgene -j3 --jobserver-auth=fifo:/var/tmp//GMfifo31391 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene TMPL=entrezgene -j3 --jobserver-auth=fifo:/var/tmp//GMfifo31391 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene/entrezgene__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene/Entrezgene.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/entrezgene/Entrezgene.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/entrezgene/Entrezgene_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene/entrezgene__.cpp:2: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene/Entrezgene.cpp:216:22: warning: loop variable 'root_comment' creates a copy from type 'const std::__list_const_iterator, void *>::value_type' (aka 'const ncbi::CRef') [-Wrange-loop-construct] for ( const auto root_comment : GetComments() ) { ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene/Entrezgene.cpp:216:11: note: use reference type 'const std::__list_const_iterator, void *>::value_type &' (aka 'const ncbi::CRef &') to prevent copying for ( const auto root_comment : GetComments() ) { ^~~~~~~~~~~~~~~~~~~~~~~~~ & In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene/entrezgene___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene/Entrezgene_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene/entrezgene___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene/entrezgene__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene/entrezgene__.cpp -o entrezgene__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/entrezgene/entrezgene___.cpp -o entrezgene___.o /bin/rm -f libentrezgene.a .libentrezgene.a.stamp ar cr libentrezgene.a entrezgene__.o entrezgene___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrezgene.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libentrezgene.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libentrezgene.a /bin/ln -f .entrezgene.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.entrezgene.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo31391 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene/unit_test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/entrezgene' /opt/pkg/bin/gmake -C omssa -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/omssa && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh omssa all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo33703 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/omssa' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/omssa' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/omssa' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/omssa' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/omssa' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/omssa TMPL=omssa -j3 --jobserver-auth=fifo:/var/tmp//GMfifo33703 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/omssa' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/omssa TMPL=omssa -j3 --jobserver-auth=fifo:/var/tmp//GMfifo33703 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/omssa' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/omssa TMPL=omssa -j3 --jobserver-auth=fifo:/var/tmp//GMfifo33703 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/omssa/omssa__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/omssa/MSBioseq.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/omssa/MSBioseq.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/omssa/MSBioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/omssa/omssa___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/omssa/MSBioseq_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/omssa' Updating dependency information Updating for dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/omssa/omssa___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/omssa/omssa__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/omssa/omssa__.cpp -o omssa__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/omssa/omssa___.cpp -o omssa___.o /bin/rm -f libomssa.a .libomssa.a.stamp ar cr libomssa.a omssa__.o omssa___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libomssa.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libomssa.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libomssa.a /bin/ln -f .omssa.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.omssa.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/omssa' /opt/pkg/bin/gmake -C remap -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh remap all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo36504 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap TMPL=remap -j3 --jobserver-auth=fifo:/var/tmp//GMfifo36504 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap TMPL=remapcli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo36504 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap TMPL=remap -j3 --jobserver-auth=fifo:/var/tmp//GMfifo36504 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap TMPL=remapcli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo36504 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap TMPL=remap -j3 --jobserver-auth=fifo:/var/tmp//GMfifo36504 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap/remap__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap/RMReply.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/remap/RMReply.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/remap/RMReply_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap/remap___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap/RMReply_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' Updating dependency information for Updating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap/remap___.cpp. dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap/remap__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap/remap__.cpp -o remap__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap/remap___.cpp -o remap___.o /bin/rm -f libremap.a .libremap.a.stamp ar cr libremap.a remap__.o remap___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremap.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libremap.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libremap.a /bin/ln -f .remap.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.remap.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap TMPL=remapcli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo36504 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap/remap_client.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/remap/remap_client.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/remap/remap_client_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap/remap_client_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap/remap_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap/remap_client_.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap/remap_client.cpp -o remap_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/remap/remap_client_.cpp -o remap_client_.o /bin/rm -f libremapcli.a .libremapcli.a.stamp ar cr libremapcli.a remap_client.o remap_client_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremapcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libremapcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libremapcli.a /bin/ln -f .remapcli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.remapcli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/remap' /opt/pkg/bin/gmake -C seqtest -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtest && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh seqtest all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo39779 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtest' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtest' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtest' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtest' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqtest' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtest TMPL=seqtest -j3 --jobserver-auth=fifo:/var/tmp//GMfifo39779 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqtest' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtest TMPL=seqtest -j3 --jobserver-auth=fifo:/var/tmp//GMfifo39779 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqtest' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtest TMPL=seqtest -j3 --jobserver-auth=fifo:/var/tmp//GMfifo39779 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtest/seqtest__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtest/SeqTestResults.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqtest/SeqTestResults.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqtest/SeqTestResults_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtest/seqtest___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtest/SeqTestResults_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqtest' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtest/seqtest__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtest/seqtest___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtest/seqtest__.cpp -o seqtest__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqtest/seqtest___.cpp -o seqtest___.o /bin/rm -f libseqtest.a .libseqtest.a.stamp ar cr libseqtest.a seqtest__.o seqtest___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqtest.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqtest.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libseqtest.a /bin/ln -f .seqtest.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.seqtest.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/seqtest' /opt/pkg/bin/gmake -C taxon1 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh taxon1 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo41952 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1 TMPL=taxon1 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo41952 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1 TMPL=local_taxon -j3 --jobserver-auth=fifo:/var/tmp//GMfifo41952 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1 TMPL=taxon1 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo41952 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1 TMPL=local_taxon -j3 --jobserver-auth=fifo:/var/tmp//GMfifo41952 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1 TMPL=taxon1 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo41952 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/taxon1__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/Taxon1_data.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/taxon1.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/taxon1.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/taxon1__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/taxon1___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/Taxon1_data_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/taxon1__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/taxon1___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/taxon1.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/cache.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/ctreecont.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/taxon1.cpp -o taxon1.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/cache.cpp -o cache.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/cache.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistrasn.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/utils.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/taxon1.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/taxon1__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/ctreecont.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/ctreecont.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/taxon1.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/taxon1__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. ascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/utils.cpp -o utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o /bin/rm -f libtaxon1.a .libtaxon1.a.stamp ar cr libtaxon1.a taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon1.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libtaxon1.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libtaxon1.a /bin/ln -f .taxon1.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.taxon1.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1 TMPL=local_taxon -j3 --jobserver-auth=fifo:/var/tmp//GMfifo41952 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/local_taxon.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Org_ref.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Org_ref_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/local_taxon.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon1/local_taxon.cpp -o local_taxon.o /bin/rm -f liblocal_taxon.a .liblocal_taxon.a.stamp ar cr liblocal_taxon.a local_taxon.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f liblocal_taxon.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f liblocal_taxon.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/liblocal_taxon.a /bin/ln -f .local_taxon.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.local_taxon.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon1' /opt/pkg/bin/gmake -C taxon3 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3 && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh taxon3 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo46595 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon3' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3 TMPL=taxon3 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo46595 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon3' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3 TMPL=taxon3 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo46595 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon3' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3 TMPL=taxon3 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo46595 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3/taxon3__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3/SequenceOfInt.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon3/SequenceOfInt.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon3/SequenceOfInt_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3/taxon3.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon3/taxon3.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon3/itaxon3.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Org_ref.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Org_ref_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3/taxon3___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3/SequenceOfInt_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon3' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3/taxon3__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3/taxon3___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3/taxon3.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3/taxon3__.cpp -o taxon3__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3/taxon3___.cpp -o taxon3___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/taxon3/taxon3.cpp -o taxon3.o /bin/rm -f libtaxon3.a .libtaxon3.a.stamp ar cr libtaxon3.a taxon3__.o taxon3___.o taxon3.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon3.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libtaxon3.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libtaxon3.a /bin/ln -f .taxon3.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.taxon3.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/taxon3' /opt/pkg/bin/gmake -C gbproj -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh gbproj all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo48905 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqset/seqset.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/submit/submit.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbproj' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj TMPL=gbproj -j3 --jobserver-auth=fifo:/var/tmp//GMfifo48905 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbproj' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj TMPL=gbproj -j3 --jobserver-auth=fifo:/var/tmp//GMfifo48905 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbproj' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj TMPL=gbproj -j3 --jobserver-auth=fifo:/var/tmp//GMfifo48905 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj/gbproj__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj/AbstractProjectItem.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/gbproj/AbstractProjectItem.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/gbproj/AbstractProjectItem_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj/gbproj___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj/AbstractProjectItem_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj/gbproj___.cpp:3: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj/DummyObsoleteType_.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/gbproj/DummyObsoleteType.hpp:44: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/gbproj/DummyObsoleteType_.hpp:131:5: warning: declaration does not declare anything [-Wmissing-declarations] union { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj/gbproj__.cpp:3: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj/DummyObsoleteType.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/gbproj/DummyObsoleteType.hpp:44: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/gbproj/DummyObsoleteType_.hpp:131:5: warning: declaration does not declare anything [-Wmissing-declarations] union { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj/gbproj__.cpp:9: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj/ProjectFolder.cpp:310:27: warning: unused variable 'item' [-Wunused-variable] CProjectItem& item = **it; ^ 3 warnings generated. 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbproj' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj/gbproj___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj/gbproj__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj/gbproj__.cpp -o gbproj__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/gbproj/gbproj___.cpp -o gbproj___.o /bin/rm -f libgbproj.a .libgbproj.a.stamp ar cr libgbproj.a gbproj__.o gbproj___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbproj.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libgbproj.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgbproj.a /bin/ln -f .gbproj.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.gbproj.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/gbproj' /opt/pkg/bin/gmake -C trackmgr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh trackmgr all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo50429 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr TMPL=trackmgr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo50429 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo50429 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo50429 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr TMPL=trackmgr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo50429 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo50429 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo50429 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr TMPL=trackmgr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo50429 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackmgr__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/TMgr_ACL_AccessLevel.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackmgr___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/TMgr_ACL_AccessLevel_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackmgr___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackmgr__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackmgr__.cpp -o trackmgr__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackmgr___.cpp -o trackmgr___.o /bin/rm -f libtrackmgr.a .libtrackmgr.a.stamp ar cr libtrackmgr.a trackmgr__.o trackmgr___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libtrackmgr.a /bin/ln -f .trackmgr.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.trackmgr.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo50429 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackmgr_client.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackmgr_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackmgr_client.cpp -o trackmgr_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp -o trackmgr_client_.o /bin/rm -f libtrackmgrcli.a .libtrackmgrcli.a.stamp ar cr libtrackmgrcli.a trackmgr_client.o trackmgr_client_.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgrcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libtrackmgrcli.a /bin/ln -f .trackmgrcli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.trackmgrcli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo50429 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/tms_exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/blast_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/displaytrack_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/createusertrack_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/item_resolver_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/switch_context_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackset_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/createtrackset_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/tms_exception.cpp -o tms_exception.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/blast_client.cpp -o blast_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/blast_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/tms_exception.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/tms_exception.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/blast_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/blast_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/tms_exception.cpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: warning: enumeration value 'eZstd' not handled in switch [-Wswitch] switch (method) { ^~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: note: add missing switch cases switch (method) { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/blast_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/blast_client.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: warning: enumeration value 'eZstd' not handled in switch [-Wswitch] switch (method) { ^~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: note: add missing switch cases switch (method) { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: warning: enumeration value 'eZstd' not handled in switch [-Wswitch] switch (method) { ^~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: note: add missing switch cases switch (method) { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:39: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:83:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : TBaseClient(move(c)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:84:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Http_svc(move(c.m_Http_svc)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:85:26: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Http_session(move(c.m_Http_session)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:86:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Rpc_client(move(c.m_Rpc_client)) ^ std:: 6 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:452:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_NS_api(move(c.m_NS_api)), m_NC_api(move(c.m_NC_api)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:83:11: note: in instantiation of member function 'ncbi::CGridRPCBaseClient::CGridRPCBaseClient' requested here : TBaseClient(move(c)), ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:452:48: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_NS_api(move(c.m_NS_api)), m_NC_api(move(c.m_NC_api)), ^ std:: 6 warnings generated. 16 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/createusertrack_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/createusertrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/createusertrack_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/createusertrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/createusertrack_client.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: warning: enumeration value 'eZstd' not handled in switch [-Wswitch] switch (method) { ^~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: note: add missing switch cases switch (method) { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/createremotetrack_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/removeusertrack_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/createremotetrack_client.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: warning: enumeration value 'eZstd' not handled in switch [-Wswitch] switch (method) { ^~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: note: add missing switch cases switch (method) { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/removeusertrack_client.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: warning: enumeration value 'eZstd' not handled in switch [-Wswitch] switch (method) { ^~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: note: add missing switch cases switch (method) { ^ 6 warnings generated. 6 warnings generated. 6 warnings generated. SION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/displaytrack_client.cpp -o displaytrack_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/createusertrack_client.cpp -o createusertrack_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp -o createremotetrack_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp -o removeusertrack_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/item_resolver_client.cpp -o item_resolver_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/switch_context_client.cpp -o switch_context_client.o /In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/item_resolver_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/switch_context_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/item_resolver_client.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/item_resolver_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/item_resolver_client.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/item_resolver_client.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: warning: enumeration value 'eZstd' not handled in switch [-Wswitch] switch (method) { ^~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: note: add missing switch cases switch (method) { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/switch_context_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/switch_context_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/track_attrvalue_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/switch_context_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/switch_context_client.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: warning: enumeration value 'eZstd' not handled in switch [-Wswitch] switch (method) { ^~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: note: add missing switch cases switch (method) { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/track_attrvalue_client.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: warning: enumeration value 'eZstd' not handled in switch [-Wswitch] switch (method) { ^~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: note: add missing switch cases switch (method) { ^ 6 warnings generated. 6 warnings generated. 6 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackset_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/createtrackset_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackset_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/trackset_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackset_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/trackset_client.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: warning: enumeration value 'eZstd' not handled in switch [-Wswitch] switch (method) { ^~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: note: add missing switch cases switch (method) { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/createtrackset_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/createtrackset_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/createtrackset_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/createtrackset_client.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: warning: enumeration value 'eZstd' not handled in switch [-Wswitch] switch (method) { ^~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: note: add missing switch cases switch (method) { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/supported_assemblies_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/services/srv_connections.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:160:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Start(move(start)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:161:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_Stop(move(stop)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:162:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_ServerSide(move(server_side)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/impl/connect_misc.hpp:187:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/supported_assemblies_client.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: warning: enumeration value 'eZstd' not handled in switch [-Wswitch] switch (method) { ^~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:235:17: note: add missing switch cases switch (method) { ^ 6 warnings generated. 6 warnings generated. 6 warnings generated. Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp -o track_attrvalue_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackset_client.cpp -o trackset_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/createtrackset_client.cpp -o createtrackset_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp -o supported_assemblies_client.o /bin/rm -f libtrackmgrgridcli.a .libtrackmgrgridcli.a.stamp ar cr libtrackmgrgridcli.a tms_exception.o blast_client.o displaytrack_client.o createusertrack_client.o createremotetrack_client.o removeusertrack_client.o item_resolver_client.o switch_context_client.o track_attrvalue_client.o trackset_client.o createtrackset_client.o supported_assemblies_client.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrgridcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgrgridcli.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libtrackmgrgridcli.a /bin/ln -f .trackmgrgridcli.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.trackmgrgridcli.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/trackmgr' /opt/pkg/bin/gmake -C valerr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valerr && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh valerr all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56879 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valerr' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valerr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valerr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valerr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valerr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valerr TMPL=valerr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56879 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valerr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valerr TMPL=valerr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56879 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valerr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valerr TMPL=valerr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56879 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valerr/valerr__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valerr/ValidErrItem.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/valerr/ValidErrItem.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valerr/valerr___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valerr/ValidErrItem_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valerr' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valerr/valerr___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valerr/valerr__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valerr/valerr__.cpp -o valerr__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valerr/valerr___.cpp -o valerr___.o /bin/rm -f libvalerr.a .libvalerr.a.stamp ar cr libvalerr.a valerr__.o valerr___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalerr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libvalerr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libvalerr.a /bin/ln -f .valerr.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.valerr.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valerr' /opt/pkg/bin/gmake -C valid -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valid' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valid && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh valid all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo58214 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valid' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valid' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valid' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valid' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valid' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valid TMPL=valid -j3 --jobserver-auth=fifo:/var/tmp//GMfifo58214 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valid' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valid TMPL=valid -j3 --jobserver-auth=fifo:/var/tmp//GMfifo58214 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valid' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valid TMPL=valid -j3 --jobserver-auth=fifo:/var/tmp//GMfifo58214 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valid/valid__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valid/Comment_rule.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/misc/sequence_util_macros.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valid/valid___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valid/Comment_rule_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valid' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valid/valid__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valid/valid___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valid/valid__.cpp -o valid__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/valid/valid___.cpp -o valid___.o /bin/rm -f libvalid.a .libvalid.a.stamp ar cr libvalid.a valid__.o valid___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalid.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libvalid.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libvalid.a /bin/ln -f .valid.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.valid.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valid' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/valid' /opt/pkg/bin/gmake -C access -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/access' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/access && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh access all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59557 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/access' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/access' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/access' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/access' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/access' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/access TMPL=access -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59557 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/access' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/access TMPL=access -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59557 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/access' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/access TMPL=access -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59557 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/access/access__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/access/Link_set.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/access/Link_set.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/access/Link_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/access/access___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/access/Link_set_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/access' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/access/access__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/access/access___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/access/access__.cpp -o access__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/access/access___.cpp -o access___.o /bin/rm -f libaccess.a .libaccess.a.stamp ar cr libaccess.a access__.o access___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libaccess.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libaccess.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libaccess.a /bin/ln -f .access.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.access.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/access' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/access' /opt/pkg/bin/gmake -C docsum -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/docsum && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh docsum all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo61273 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/docsum' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/docsum' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/docsum' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/docsum' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/docsum' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/docsum TMPL=docsum -j3 --jobserver-auth=fifo:/var/tmp//GMfifo61273 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/docsum' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/docsum TMPL=docsum -j3 --jobserver-auth=fifo:/var/tmp//GMfifo61273 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/docsum' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/docsum TMPL=docsum -j3 --jobserver-auth=fifo:/var/tmp//GMfifo61273 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/docsum/docsum__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/docsum/Assay.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/docsum/Assay.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/docsum/Assay_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/docsum/docsum___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/docsum/Assay_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/docsum' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/docsum/docsum___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/docsum/docsum__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/docsum/docsum__.cpp -o docsum__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/docsum/docsum___.cpp -o docsum___.o /bin/rm -f libdocsum.a .libdocsum.a.stamp ar cr libdocsum.a docsum__.o docsum___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdocsum.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libdocsum.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdocsum.a /bin/ln -f .docsum.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.docsum.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/docsum' /opt/pkg/bin/gmake -C featdef -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/featdef && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh featdef all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo63390 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/featdef' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/featdef' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/featdef' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/featdef' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/featdef' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/featdef TMPL=featdef -j3 --jobserver-auth=fifo:/var/tmp//GMfifo63390 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/featdef' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/featdef TMPL=featdef -j3 --jobserver-auth=fifo:/var/tmp//GMfifo63390 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/featdef' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/featdef TMPL=featdef -j3 --jobserver-auth=fifo:/var/tmp//GMfifo63390 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/featdef/featdef__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/featdef/FeatDef.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/featdef/FeatDef.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/featdef/FeatDef_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/featdef/featdef___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/featdef/FeatDef_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/featdef' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/featdef/featdef___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/featdef/featdef__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/featdef/featdef__.cpp -o featdef__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/featdef/featdef___.cpp -o featdef___.o /bin/rm -f libfeatdef.a .libfeatdef.a.stamp ar cr libfeatdef.a featdef__.o featdef___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libfeatdef.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libfeatdef.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libfeatdef.a /bin/ln -f .featdef.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.featdef.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/featdef' /opt/pkg/bin/gmake -C genomecoll -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh genome_collection all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo64699 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll' cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh gencoll_client all Waiting for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/make_asn.lock. Acquired /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/make_asn.lock for PID 64920 (make_asn) gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo64699 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA \ -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll TMPL=genome_collection -j3 --jobserver-auth=fifo:/var/tmp//GMfifo64699 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll TMPL=gencoll_client -j3 --jobserver-auth=fifo:/var/tmp//GMfifo64699 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll TMPL=genome_collection -j3 --jobserver-auth=fifo:/var/tmp//GMfifo64699 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll TMPL=gencoll_client -j3 --jobserver-auth=fifo:/var/tmp//GMfifo64699 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll TMPL=genome_collection -j3 --jobserver-auth=fifo:/var/tmp//GMfifo64699 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/genome_collection__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/GC_Assemblies.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/genomecoll/GC_Assemblies.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/genomecoll/GC_Assemblies_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/genome_collection___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/GC_Assemblies_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/genome_collection__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/genome_collection___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o /bin/rm -f libgenome_collection.a .libgenome_collection.a.stamp ar cr libgenome_collection.a genome_collection__.o genome_collection___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libgenome_collection.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgenome_collection.a /bin/ln -f .genome_collection.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.genome_collection.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll TMPL=gencoll_client -j3 --jobserver-auth=fifo:/var/tmp//GMfifo64699 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/gencoll_client__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/GCClientRequest.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/genomecoll/GCClientRequest.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/genomecoll/GCClientRequest_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/genomecoll/genomic_collections_cli.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/genomecoll/genomic_collections_cli_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/gencoll_client___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/GCClientRequest_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp:97:5: warning: 'SetRetryLimit' is deprecated [-Wdeprecated-declarations] SetRetryLimit(40); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/rpcbase_impl.hpp:91:5: note: 'SetRetryLimit' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/gencoll_client__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/gencoll_client___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/cached_assembly.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/gencoll_client__.cpp -o gencoll_client__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/gencoll_client___.cpp -o gencoll_client___.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp -o genomic_collections_cli.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp -o genomic_collections_cli_.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/cl2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/cached_assembly.cpp:28: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/genomecoll/cached_assembly.hpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/genomecoll/GC_Assembly.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/genomecoll/GC_Assembly_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/cached_assembly.cpp:86:74: warning: adding 'std::basic_string::size_type' (aka 'unsigned long') to a string does not append to the string [-Wstring-plus-int] NCBI_THROW(CCoreException, eCore, "Invalid blob size detected: " + blob.size()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbiexpt.hpp:708:45: note: expanded from macro 'NCBI_THROW' message)); \ ^~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbiexpt.hpp:697:51: note: expanded from macro 'NCBI_EXCEPTION' exception_class, err_code, message) ^~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbiexpt.hpp:685:63: note: expanded from macro 'NCBI_EXCEPTION_VAR' NCBI_EXCEPTION_VAR_EX(name, 0, exception_class, err_code, message) ^~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbiexpt.hpp:681:57: note: expanded from macro 'NCBI_EXCEPTION_VAR_EX' prev_exception_ptr, exception_class::err_code, (message)) ^~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbiexpt.hpp:689:12: note: expanded from macro 'NCBI_EXCEPTION_THROW' throw (exception_var) ^~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/cached_assembly.cpp:86:74: note: use array indexing to silence this warning NCBI_THROW(CCoreException, eCore, "Invalid blob size detected: " + blob.size()); ^ & [ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbiexpt.hpp:708:45: note: expanded from macro 'NCBI_THROW' message)); \ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbiexpt.hpp:697:51: note: expanded from macro 'NCBI_EXCEPTION' exception_class, err_code, message) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbiexpt.hpp:685:63: note: expanded from macro 'NCBI_EXCEPTION_VAR' NCBI_EXCEPTION_VAR_EX(name, 0, exception_class, err_code, message) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbiexpt.hpp:681:57: note: expanded from macro 'NCBI_EXCEPTION_VAR_EX' prev_exception_ptr, exception_class::err_code, (message)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbiexpt.hpp:689:12: note: expanded from macro 'NCBI_EXCEPTION_THROW' throw (exception_var) ^ 2 warnings generated. ang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/cached_assembly.cpp -o cached_assembly.o /bin/rm -f libgencoll_client.a .libgencoll_client.a.stamp ar cr libgencoll_client.a gencoll_client__.o gencoll_client___.o genomic_collections_cli.o genomic_collections_cli_.o cached_assembly.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgencoll_client.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libgencoll_client.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgencoll_client.a /bin/ln -f .gencoll_client.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.gencoll_client.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -C gc_cli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo64665 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/gc_cli TMPL=gc_cli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo70938 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/gc_cli TMPL=gc_cli -j3 --jobserver-auth=fifo:/var/tmp//GMfifo70938 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=gc_cli -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp -o gc_cli.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O gc_cli.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lgencoll_client-static -lgenome_collection-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lsqlitewrapp-static -lxser-static -lxconnect-static -lxcompress-static -lxutil-static -lxncbi-static -lsqlite3 -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o gc_cli strip gc_cli /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gc_cli /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f gc_cli /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/gc_cli gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genomecoll' /opt/pkg/bin/gmake -C homologene -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/homologene && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh homologene all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72275 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqalign/seqalign.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/homologene' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/homologene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/homologene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/homologene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/homologene' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/homologene TMPL=homologene -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72275 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/homologene' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/homologene TMPL=homologene -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72275 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/homologene' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/homologene TMPL=homologene -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72275 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/homologene/homologene__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/homologene/HG_Alignment.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/homologene/HG_Alignment.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/homologene/HG_Alignment_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/homologene/homologene___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/homologene/HG_Alignment_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/homologene' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/homologene/homologene__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/homologene/homologene___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/homologene/homologene__.cpp -o homologene__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/homologene/homologene___.cpp -o homologene___.o /bin/rm -f libhomologene.a .libhomologene.a.stamp ar cr libhomologene.a homologene__.o homologene___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libhomologene.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libhomologene.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libhomologene.a /bin/ln -f .homologene.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.homologene.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/homologene' /opt/pkg/bin/gmake -C mim -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mim' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mim && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh mim all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo74191 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mim' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mim' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mim' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mim' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mim' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mim TMPL=mim -j3 --jobserver-auth=fifo:/var/tmp//GMfifo74191 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mim' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mim TMPL=mim -j3 --jobserver-auth=fifo:/var/tmp//GMfifo74191 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mim' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mim TMPL=mim -j3 --jobserver-auth=fifo:/var/tmp//GMfifo74191 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mim/mim__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mim/Mim_allelic_variant.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mim/Mim_allelic_variant.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mim/Mim_allelic_variant_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mim/mim___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mim/Mim_allelic_variant_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mim' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mim/mim___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mim/mim__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mim/mim__.cpp -o mim__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/mim/mim___.cpp -o mim___.o /bin/rm -f libmim.a .libmim.a.stamp ar cr libmim.a mim__.o mim___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmim.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libmim.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libmim.a /bin/ln -f .mim.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.mim.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mim' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/mim' /opt/pkg/bin/gmake -C objprt -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/objprt && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh objprt all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo75534 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/objprt' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/objprt' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/objprt' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/objprt' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/objprt' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/objprt TMPL=objprt -j3 --jobserver-auth=fifo:/var/tmp//GMfifo75534 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/objprt' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/objprt TMPL=objprt -j3 --jobserver-auth=fifo:/var/tmp//GMfifo75534 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/objprt' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/objprt TMPL=objprt -j3 --jobserver-auth=fifo:/var/tmp//GMfifo75534 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/objprt/objprt__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/objprt/PrintForm.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/objprt/PrintForm.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/objprt/PrintForm_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/objprt/objprt___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/objprt/PrintForm_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/objprt' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/objprt/objprt___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/objprt/objprt__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/objprt/objprt__.cpp -o objprt__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/objprt/objprt___.cpp -o objprt___.o /bin/rm -f libobjprt.a .libobjprt.a.stamp ar cr libobjprt.a objprt__.o objprt___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjprt.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libobjprt.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libobjprt.a /bin/ln -f .objprt.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.objprt.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/objprt' /opt/pkg/bin/gmake -C variation -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh variation all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76572 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqfeat/seqfeat.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seqloc/seqloc.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/pub/pub.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA \ -oc variation -or objects/variation -odi -od variation.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump \ datatool: 2.23.0 gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation TMPL=variation -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76572 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation TMPL=variation -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76572 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation TMPL=variation -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76572 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation/variation__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation/VariantPlacement.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/variation/VariantPlacement.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/variation/VariantPlacement_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation/variation___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation/VariantPlacement_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation/variation__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation/variation___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation/variation__.cpp -o variation__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation/variation___.cpp -o variation___.o /bin/rm -f libvariation.a .libvariation.a.stamp ar cr libvariation.a variation__.o variation___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvariation.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libvariation.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libvariation.a /bin/ln -f .variation.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.variation.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation' /opt/pkg/bin/gmake -C macro -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro/unit_test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh macro all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78555 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro TMPL=macro -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78555 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro TMPL=macro -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78555 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro TMPL=macro -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78555 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/macro__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/macro__.cpp:11: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/Apply_table_extra_data.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/Apply_table_extra_data.hpp:44: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/Apply_table_extra_data_.hpp:126:5: warning: declaration does not declare anything [-Wmissing-declarations] union { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/macro___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/AECRParse_action_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/macro___.cpp:6: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/Add_file_action_.cpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/Apply_table_extra_data.hpp:44: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/Apply_table_extra_data_.hpp:126:5: warning: declaration does not declare anything [-Wmissing-declarations] union { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/macro__.cpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/Feat_qual_choice.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/Feat_qual_choice.hpp:45: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/String_constraint.hpp:59:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_original(move(v.m_original)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/String_constraint.hpp:60:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_lowercase(move(v.m_lowercase)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/String_constraint.hpp:61:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_uppercase(move(v.m_uppercase)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/String_constraint.hpp:66:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_original = move(v.m_original); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/String_constraint.hpp:67:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_lowercase = move(v.m_lowercase); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/String_constraint.hpp:68:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_uppercase = move(v.m_uppercase); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/String_constraint.hpp:73:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_original = move(v); ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/macro___.cpp:8: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/Apply_action_.cpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/Field_type.hpp:45: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/String_constraint.hpp:59:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_original(move(v.m_original)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/String_constraint.hpp:60:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_lowercase(move(v.m_lowercase)), ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/String_constraint.hpp:61:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_uppercase(move(v.m_uppercase)) ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/String_constraint.hpp:66:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_original = move(v.m_original); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/String_constraint.hpp:67:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_lowercase = move(v.m_lowercase); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/String_constraint.hpp:68:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_uppercase = move(v.m_uppercase); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/String_constraint.hpp:73:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_original = move(v); ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/macro__.cpp:64: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/Fix_format_action.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/Fix_format_action.hpp:44: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/Fix_format_action_.hpp:141:5: warning: declaration does not declare anything [-Wmissing-declarations] union { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/macro__.cpp:66: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/Fix_sets_action.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/Fix_sets_action.hpp:44: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/Fix_sets_action_.hpp:136:5: warning: declaration does not declare anything [-Wmissing-declarations] union { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/macro__.cpp:115: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/Pub_field_speci_const_type.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/Pub_field_speci_const_type.hpp:44: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/Pub_field_speci_const_type_.hpp:146:5: warning: declaration does not declare anything [-Wmissing-declarations] union { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/macro___.cpp:64: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/Fix_format_action_.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/Fix_format_action.hpp:44: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/Fix_format_action_.hpp:141:5: warning: declaration does not declare anything [-Wmissing-declarations] union { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/macro___.cpp:66: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/Fix_sets_action_.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/Fix_sets_action.hpp:44: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/Fix_sets_action_.hpp:136:5: warning: declaration does not declare anything [-Wmissing-declarations] union { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/macro___.cpp:115: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/Pub_field_speci_const_type_.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/Pub_field_speci_const_type.hpp:44: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/macro/Pub_field_speci_const_type_.hpp:146:5: warning: declaration does not declare anything [-Wmissing-declarations] union { ^ 12 warnings generated. 12 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/macro__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/macro___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/macro__.cpp -o macro__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/macro/macro___.cpp -o macro___.o /bin/rm -f libmacro.a .libmacro.a.stamp ar cr libmacro.a macro__.o macro___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmacro.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libmacro.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libmacro.a /bin/ln -f .macro.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.macro.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo78555 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro/unit_test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/macro' /opt/pkg/bin/gmake -C genesbyloc -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genesbyloc && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh genesbyloc all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo81999 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genesbyloc' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genesbyloc' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genesbyloc' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genesbyloc' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genesbyloc' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -j3 --jobserver-auth=fifo:/var/tmp//GMfifo81999 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genesbyloc' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -j3 --jobserver-auth=fifo:/var/tmp//GMfifo81999 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genesbyloc' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -j3 --jobserver-auth=fifo:/var/tmp//GMfifo81999 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genesbyloc/GBL_Data.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/genesbyloc/GBL_Data.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/genesbyloc/GBL_Data_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genesbyloc/GBL_Data_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genesbyloc' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp -o genesbyloc__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp -o genesbyloc___.o /bin/rm -f libgenesbyloc.a .libgenesbyloc.a.stamp ar cr libgenesbyloc.a genesbyloc__.o genesbyloc___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenesbyloc.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libgenesbyloc.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgenesbyloc.a /bin/ln -f .genesbyloc.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.genesbyloc.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/genesbyloc' /opt/pkg/bin/gmake -C coords -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/coords' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/coords && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh objcoords all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83957 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=objcoords MODULE_PATH=objects/coords MODULE_ASN=objcoords.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/coords' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m objcoords.asn -M "" -oA \ -oc objcoords -or objects/coords -odi -od objcoords.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd objcoords.dump \ datatool: 2.23.0 gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/coords' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/coords' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/coords' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/coords' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/coords TMPL=objcoords -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83957 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/coords' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/coords TMPL=objcoords -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83957 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/coords' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/coords TMPL=objcoords -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83957 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/coords/objcoords__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/coords/HGVS_Coordinate.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/coords/HGVS_Coordinate.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/coords/HGVS_Coordinate_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/coords/objcoords___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/coords/HGVS_Coordinate_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/coords' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/coords/objcoords___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/coords/objcoords__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/coords/objcoords__.cpp -o objcoords__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/coords/objcoords___.cpp -o objcoords___.o /bin/rm -f libobjcoords.a .libobjcoords.a.stamp ar cr libobjcoords.a objcoords__.o objcoords___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjcoords.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libobjcoords.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libobjcoords.a /bin/ln -f .objcoords.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.objcoords.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/coords' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/coords' /opt/pkg/bin/gmake -C varrep -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh varrep all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo85842 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=varrep MODULE_PATH=objects/varrep MODULE_ASN=varrep.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m varrep.asn -M "" -oA \ -oc varrep -or objects/varrep -odi -od varrep.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd varrep.dump \ datatool: 2.23.0 gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/varrep' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep TMPL=varrep -j3 --jobserver-auth=fifo:/var/tmp//GMfifo85842 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/varrep' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep TMPL=varrep -j3 --jobserver-auth=fifo:/var/tmp//GMfifo85842 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/varrep' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep TMPL=varrep -j3 --jobserver-auth=fifo:/var/tmp//GMfifo85842 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep/varrep__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep/AaInterval.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/varrep/AaSite.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/varrep/AaSite_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep/varrep__.cpp:20: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep/NtSite.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/varrep/NtSite.hpp:44: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/varrep/NtSite_.hpp:320:9: warning: declaration does not declare anything [-Wmissing-declarations] union { ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep/varrep___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep/AaInterval_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep/varrep___.cpp:17: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep/NtIntLimit_.cpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/varrep/NtSite.hpp:44: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/varrep/NtSite_.hpp:320:9: warning: declaration does not declare anything [-Wmissing-declarations] union { ^ 2 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/varrep' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep/varrep___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep/varrep__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep/varrep__.cpp -o varrep__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/varrep/varrep___.cpp -o varrep___.o /bin/rm -f libvarrep.a .libvarrep.a.stamp ar cr libvarrep.a varrep__.o varrep___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvarrep.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libvarrep.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libvarrep.a /bin/ln -f .varrep.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.varrep.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/varrep' /opt/pkg/bin/gmake -C variation_libs -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -C dbsnp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo87374 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -C search_by_rsid -j3 --jobserver-auth=fifo:/var/tmp//GMfifo87422 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh search_by_rsid all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo87455 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=search_by_rsid MODULE_PATH=objects/variation_libs/dbsnp/search_by_rsid MODULE_ASN=search_by_rsid.asn MODULE_IMPORT='objects/trackmgr/trackmgr objects/general/general' IMPDEPS='/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/trackmgr/trackmgr.asn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/trackmgr/trackmgr.asn objects/general/general.asn' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m search_by_rsid.asn -M "objects/trackmgr/trackmgr.asn objects/general/general.asn" -oA \ -oc search_by_rsid -or objects/variation_libs/dbsnp/search_by_rsid -odi -od search_by_rsid.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd search_by_rsid.dump \ datatool: 2.23.0 gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid TMPL=search_by_rsid -j3 --jobserver-auth=fifo:/var/tmp//GMfifo87455 export-headers gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid TMPL=search_by_rsid -j3 --jobserver-auth=fifo:/var/tmp//GMfifo87455 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid TMPL=search_by_rsid -j3 --jobserver-auth=fifo:/var/tmp//GMfifo87455 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/Error.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/variation_libs/dbsnp/search_by_rsid/Error.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/variation_libs/dbsnp/search_by_rsid/Error_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/Error_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.cpp -o search_by_rsid__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp -o search_by_rsid___.o /bin/rm -f libsearchbyrsid.a .libsearchbyrsid.a.stamp ar cr libsearchbyrsid.a search_by_rsid__.o search_by_rsid___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsearchbyrsid.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libsearchbyrsid.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libsearchbyrsid.a /bin/ln -f .searchbyrsid.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.searchbyrsid.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /opt/pkg/bin/gmake -C tooltip_service -j3 --jobserver-auth=fifo:/var/tmp//GMfifo87422 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh dbsnp_tooltip_service all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88951 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=dbsnp_tooltip_service MODULE_PATH=objects/variation_libs/dbsnp/tooltip_service MODULE_ASN=dbsnp_tooltip_service.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m dbsnp_tooltip_service.asn -M "" -oA \ -oc dbsnp_tooltip_service -or objects/variation_libs/dbsnp/tooltip_service -odi -od dbsnp_tooltip_service.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd dbsnp_tooltip_service.dump \ datatool: 2.23.0 gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service TMPL=dbsnp_tooltip_service -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88951 export-headers gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service TMPL=dbsnp_tooltip_service -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88951 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service TMPL=dbsnp_tooltip_service -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88951 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipData.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipData.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipData_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipData_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.cpp -o dbsnp_tooltip_service__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp -o dbsnp_tooltip_service___.o /bin/rm -f libdbsnp_tooltip_service.a .libdbsnp_tooltip_service.a.stamp ar cr libdbsnp_tooltip_service.a dbsnp_tooltip_service__.o dbsnp_tooltip_service___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbsnp_tooltip_service.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libdbsnp_tooltip_service.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbsnp_tooltip_service.a /bin/ln -f .dbsnp_tooltip_service.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.dbsnp_tooltip_service.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/variation_libs' /opt/pkg/bin/gmake -C dbsnp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo43038 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -C primary_track -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90651 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/dbsnp/primary_track/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/dbsnp/primary_track/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/dbsnp/primary_track/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track/test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/dbsnp/primary_track && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh --protobuf dbsnp all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. grep: /grpc_cpp_plugin: No such file or directory Warning: Skipping code generation for dbsnp.proto because protoc is unavailable here. File dbsnp.module not found. Using defaults... /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90681 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.protobuf MODULE=dbsnp MODULE_PATH=objects/dbsnp/primary_track MODULE_ASN=dbsnp.proto MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/no/need/for/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/dbsnp/primary_track' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/dbsnp/primary_track' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/dbsnp/primary_track' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/dbsnp/primary_track' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/dbsnp/primary_track TMPL=dbsnp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90681 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/dbsnp/primary_track TMPL=dbsnp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90681 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/dbsnp/primary_track TMPL=dbsnp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90681 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/dbsnp/primary_track/snpptis.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/dbsnp/primary_track/dbsnp.pb.wrapper.cc. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/dbsnp/primary_track/dbsnp.grpc.pb.wrapper.cc. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/dbsnp/primary_track/snpptis.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_DBSNP_PTIS_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/dbsnp/primary_track/dbsnp.pb.wrapper.cc -o dbsnp.pb.wrapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_DBSNP_PTIS_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/dbsnp/primary_track/dbsnp.grpc.pb.wrapper.cc -o dbsnp.grpc.pb.wrapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_DBSNP_PTIS_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objects/dbsnp/primary_track/snpptis.cpp -o snpptis.o /bin/rm -f libdbsnp_ptis.a .libdbsnp_ptis.a.stamp ar cr libdbsnp_ptis.a dbsnp.pb.wrapper.o dbsnp.grpc.pb.wrapper.o snpptis.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbsnp_ptis.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libdbsnp_ptis.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbsnp_ptis.a /bin/ln -f .dbsnp_ptis.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.dbsnp_ptis.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90681 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track/test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects/dbsnp' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objects' /opt/pkg/bin/gmake -C objmgr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56877 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/test/Makefile gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr TMPL=objmgr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo92771 export-headers gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr TMPL=objmgr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo92771 flag-stamps gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr TMPL=objmgr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo92771 all gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_table_setters.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_table_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_annot_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/table_field.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/snp_annot_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_map_switch.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_types_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_loc_cvt.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_selector.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_descr_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/feat_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/graph_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_object.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_object_index.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_info_object.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_entry_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_base_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_set_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/data_source.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/priority.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/prefetch_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/prefetch_manager.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/prefetch_manager_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/prefetch_actions.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/scope.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/heap_scope.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/scope_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/scope_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_map.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_map_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_entry_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_annot_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_table_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_entry_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_set_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_annot_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/align_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/data_loader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/handle_range.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/objmgr_exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/handle_range_map.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/object_manager.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_vector.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_vector_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seqdesc_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_split_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_chunk_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_type_index.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_loc_mapper.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_collector.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_align_mapper.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/data_loader_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/mapped_feat.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_feat_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_graph_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_align_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_assigner.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/scope_transaction.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/scope_transaction_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/edit_commands_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_entry_edit_commands.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_edit_commands.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/edit_saver.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/unsupp_editsaver.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/edits_db_engine.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/edits_db_saver.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_finder.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/gc_assembly_parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split_parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_id_sort.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_table_setters.cpp -o seq_table_setters.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_table_info.cpp -o seq_table_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/biIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_annot_info.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_annot_info.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_table_info.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_table_info.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_table_setters.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_table_setters.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/table_field.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_table_info.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_map_switch.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_map_switch.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_map.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/snp_annot_info.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. n/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_annot_info.cpp -o seq_annot_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/table_field.cpp -o table_field.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_map_switch.cpp -o seq_map_switch.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/snp_annot_info.cpp -o snp_annot_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_types_ci.cpp -o annot_types_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_types_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/annot_collector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_selector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_loc_cvt.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_loc_cvt.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_selector.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_selector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_descr_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_descr_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_descr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/feat_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/feat_ci.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/annot_collector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_selector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. AFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_loc_cvt.cpp -o seq_loc_cvt.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_selector.cpp -o annot_selector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_descr_ci.cpp -o seq_descr_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/feat_ci.cpp -o feat_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/graph_ci.cpp -o graph_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_object.cIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/graph_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/graph_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/annot_collector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_selector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_object.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/annot_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_object_index.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/annot_object_index.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/annot_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/annot_collector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_selector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_info.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/data_source.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_info_object.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_entry_info.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. pp -o annot_object.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_object_index.cpp -o annot_object_index.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_ci.cpp -o annot_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_info.cpp -o tse_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_info_object.cpp -o tse_info_object.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_entry_info.cpp -o seq_entry_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_base_info.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/bioseq_base_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_set_info.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_info.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/bioseq_info.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/bioseq_base_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/data_source.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/data_source.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. g/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_base_info.cpp -o bioseq_base_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_set_info.cpp -o bioseq_set_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_info.cpp -o bioseq_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/data_source.cpp -o data_source.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/priority.cpp -o priority.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/priority.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/scope_info.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/prefetch_impl.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/prefetch_impl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/prefetch_actions.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/prefetch_actions.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/scope.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/heap_scope.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/scope_impl.hpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. bulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/prefetch_impl.cpp -o prefetch_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/prefetch_manager.cpp -o prefetch_manager.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/prefetch_manager_impl.cpp -o prefetch_manager_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/prefetch_actions.cpp -o prefetch_actions.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/scope.cpp -o scope.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/heap_scope.cpp -o heap_scope.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/scope_impl.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/scope_info.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/scope_info.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_handle.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/tse_handle.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_map.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_map.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/scope_impl.cpp -o scope_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/scope_info.cpp -o scope_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_handle.cpp -o tse_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_map.cpp -o seq_map.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_map_ci.cpp -o seq_map_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/includIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_map_ci.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_map_ci.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_map.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_entry_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_entry_ci.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_set_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Bioseq_set.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Bioseq_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_annot_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_annot_ci.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_table_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_table_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/annot_collector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_selector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_entry_handle.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_entry_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_set_handle.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_set_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Bioseq_set.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Bioseq_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_handle.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. e -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_entry_ci.cpp -o seq_entry_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_annot_ci.cpp -o seq_annot_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_table_ci.cpp -o seq_table_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_entry_handle.cpp -o seq_entry_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_set_handle.cpp -o bioseq_set_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_handle.cpp -o bioseq_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascalIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_annot_handle.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_annot_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/tse_handle.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/align_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/align_ci.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/annot_collector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_selector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/data_loader.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/handle_range.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/handle_range.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. -strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_annot_handle.cpp -o seq_annot_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/align_ci.cpp -o align_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/data_loader.cpp -o data_loader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/handle_range.cpp -o handle_range.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/objmgr_exception.cpp -o objmgr_exception.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.11 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/handle_range_map.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/handle_range_map.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/handle_range.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_vector.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/object_manager.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_vector.cpp:835:13: warning: variable 'dst_pos' set but not used [-Wunused-but-set-variable] TSeqPos dst_pos = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_vector_ci.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seqdesc_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seqdesc_ci.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_descr_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_descr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_split_info.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_split_info.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 4.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/handle_range_map.cpp -o handle_range_map.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/object_manager.cpp -o object_manager.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_vector.cpp -o seq_vector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_vector_ci.cpp -o seq_vector_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seqdesc_ci.cpp -o seqdesc_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_split_info.cpp -o tse_split_info.o /Users/pbulk/build/biology/ncbi-blast+1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_chunk_info.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_chunk_info.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_ci.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_type_index.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/annot_type_index.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:93: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/SeqFeatData_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. /work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_chunk_info.cpp -o tse_chunk_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_ci.cpp -o bioseq_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_type_index.cpp -o annot_type_index.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_loc_mapper.cpp -o seq_loc_mapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_align_mapper.cpp -o seq_align_mapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -DIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_align_mapper.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_align_mapper.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_loc_mapper.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_loc_mapper.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_collector.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/annot_collector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_selector.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_collector.cpp:3694:17: warning: variable 'index' set but not used [-Wunused-but-set-variable] TSeqPos index = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/data_loader_factory.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/data_loader_factory.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/mapped_feat.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/mapped_feat.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_feat_handle.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_feat_handle.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_feat_handle.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_graph_handle.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_graph_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqres/Seq_graph.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqres/Seq_graph_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. _REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_collector.cpp -o annot_collector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/data_loader_factory.cpp -o data_loader_factory.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/mapped_feat.cpp -o mapped_feat.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_feat_handle.cpp -o seq_feat_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_graph_handle.cpp -o seq_graph_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_align_handle.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_align_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_assigner.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/scope_transaction.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/scope_transaction_impl.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/scope_impl.hpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/edit_commands_impl.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/scope_transaction_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/scope_impl.hpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_edit_commands.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/bioseq_edit_commands.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_entry_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. /ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_align_handle.cpp -o seq_align_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/tse_assigner.cpp -o tse_assigner.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/scope_transaction.cpp -o scope_transaction.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/scope_transaction_impl.cpp -o scope_transaction_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/edit_commands_impl.cpp -o edit_commands_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_edit_commands.cpp -o bioseq_edit_commands.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/op1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_entry_edit_commands.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_entry_edit_commands.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/scope_transaction_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/scope_impl.hpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/scope_transaction_impl.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/scope_impl.hpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/edit_saver.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/edit_saver.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. t/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_entry_edit_commands.cpp -o seq_entry_edit_commands.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp -o bioseq_set_edit_commands.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/edit_saver.cpp -o edit_saver.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/unsupp_editsaver.cpp -o unsupp_editsaver.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/edits_db_engine.cpp -o edits_db_engine.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blaIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/unsupp_editsaver.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/unsupp_editsaver.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/edit_saver.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/edits_db_saver.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/edits_db_saver.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/unsupp_editsaver.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/edit_saver.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_finder.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/gc_assembly_parser.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/gc_assembly_parser.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split_parser.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bio_object_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_id_sort.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/impl/seq_id_sort.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. st-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/edits_db_saver.cpp -o edits_db_saver.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/annot_finder.cpp -o annot_finder.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/gc_assembly_parser.cpp -o gc_assembly_parser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split_parser.cpp -o split_parser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/seq_id_sort.cpp -o seq_id_sort.o /bin/rm -f libxobjmgr.a .libxobjmgr.a.stamp ar cr libxobjmgr.a seq_table_setters.o seq_table_info.o seq_annot_info.o table_field.o seq_map_switch.o snp_annot_info.o annot_types_ci.o seq_loc_cvt.o annot_selector.o seq_descr_ci.o feat_ci.o graph_ci.o annot_object.o annot_object_index.o annot_ci.o tse_info.o tse_info_object.o seq_entry_info.o bioseq_base_info.o bioseq_set_info.o bioseq_info.o data_source.o priority.o prefetch_impl.o prefetch_manager.o prefetch_manager_impl.o prefetch_actions.o scope.o heap_scope.o scope_impl.o scope_info.o tse_handle.o seq_map.o seq_map_ci.o seq_entry_ci.o seq_annot_ci.o seq_table_ci.o seq_entry_handle.o bioseq_set_handle.o bioseq_handle.o seq_annot_handle.o align_ci.o data_loader.o handle_range.o objmgr_exception.o handle_range_map.o object_manager.o seq_vector.o seq_vector_ci.o seqdesc_ci.o tse_split_info.o tse_chunk_info.o bioseq_ci.o annot_type_index.o seq_loc_mapper.o seq_align_mapper.o annot_collector.o data_loader_factory.o mapped_feat.o seq_feat_handle.o seq_graph_handle.o seq_align_handle.o tse_assigner.o scope_transaction.o scope_transaction_impl.o edit_commands_impl.o bioseq_edit_commands.o seq_entry_edit_commands.o bioseq_set_edit_commands.o edit_saver.o unsupp_editsaver.o edits_db_engine.o edits_db_saver.o annot_finder.o gc_assembly_parser.o split_parser.o seq_id_sort.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjmgr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxobjmgr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxobjmgr.a /bin/ln -f .xobjmgr.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xobjmgr.dep gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo92771 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/test' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/test' /opt/pkg/bin/gmake -C util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo92771 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util/unit_test/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util TMPL=util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo19014 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util TMPL=util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo19014 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util TMPL=util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo19014 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/weight.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/sequence.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/feature.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/indexer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/seqtitle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/create_defline.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/obj_sniff.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/seq_loc_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/seq_align_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/seq_trimmer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/objutil.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/feature_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_source_desc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_available_modifier.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_mod_combo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_source_group.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_feature_clause.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_options.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/weight.cpp -o weight.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fnIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/sequence.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/feature.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/weight.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/indexer.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/misc/sequence_macros.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/biblio/biblio_macros.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/misc/sequence_util_macros.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/seqtitle.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/create_defline.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/create_defline.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/MolInfo.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/MolInfo_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/seqtitle.cpp:308:56: warning: variable 'prots' set but not used [-Wunused-but-set-variable] unsigned int genes = 0, cdregions = 0, prots = 0; ^ 1 warning generated. o-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/sequence.cpp -o sequence.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/feature.cpp -o feature.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/indexer.cpp -o indexer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/seqtitle.cpp -o seqtitle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/create_defline.cpp -o create_defline.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/obj_sniff.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/obj_sniff.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/create_defline.cpp:1712:52: warning: variable 'prots' set but not used [-Wunused-but-set-variable] unsigned int genes = 0, cdregions = 0, prots = 0; ^ 2 warnings generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/seq_loc_util.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/seq_align_util.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/seq_trimmer.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/sequence.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/sequence.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/objutil.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/obj_sniff.cpp -o obj_sniff.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/seq_loc_util.cpp -o seq_loc_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/seq_align_util.cpp -o seq_align_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/seq_trimmer.cpp -o seq_trimmer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp -o bioseqgaps_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/objutil.cpp -o objutil.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strin1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/feature_edit.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/mapped_feat.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_feat_handle.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/objutil.cpp:1114:13: warning: unused function 's_IsValidAccession' [-Wunused-function] static bool s_IsValidAccession(const string& acc) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/autodef.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BioSource.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BioSource_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/autodef.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BioSource.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BioSource_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_source_desc.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/autodef_source_desc.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BioSource.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BioSource_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp:308:14: warning: variable 'used_gene' set but not used [-Wunused-but-set-variable] bool used_gene = false; ^ 1 warning generated. 1 warning generated. gs -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/feature_edit.cpp -o feature_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef.cpp -o autodef.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp -o autodef_feature_clause_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_source_desc.cpp -o autodef_source_desc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_available_modifier.cpp -o autodef_available_modifier.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUN2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_available_modifier.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/autodef.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BioSource.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BioSource_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_mod_combo.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seqdesc_ci.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_descr_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_descr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_source_group.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seqdesc_ci.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_descr_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_descr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_mod_combo.cpp:1033:10: warning: unused variable 'added' [-Wunused-variable] bool added = false, rval = false; ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_source_group.cpp:222:58: warning: unused variable 'mod_it_other' [-Wunused-variable] CAutoDefSourceDescription::TModifierVector::iterator mod_it_other; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_feature_clause.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/autodef.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BioSource.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BioSource_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/autodef_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. ETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_mod_combo.cpp -o autodef_mod_combo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_source_group.cpp -o autodef_source_group.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_feature_clause.cpp -o autodef_feature_clause.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/util/autodef_options.cpp -o autodef_options.o /bin/rm -f libxobjutil.a .libxobjutil.a.stamp ar cr libxobjutil.a weight.o sequence.o feature.o indexer.o seqtitle.o create_defline.o obj_sniff.o seq_loc_util.o seq_align_util.o seq_trimmer.o bioseqgaps_ci.o objutil.o feature_edit.o autodef.o autodef_feature_clause_base.o autodef_source_desc.o autodef_available_modifier.o autodef_mod_combo.o autodef_source_group.o autodef_feature_clause.o autodef_options.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjutil.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxobjutil.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxobjutil.a /bin/ln -f .xobjutil.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xobjutil.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo19014 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util/unit_test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/util' /opt/pkg/bin/gmake -C split -j3 --jobserver-auth=fifo:/var/tmp//GMfifo92771 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/split' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split TMPL=id2_split -j3 --jobserver-auth=fifo:/var/tmp//GMfifo31029 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/split' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split TMPL=id2_split -j3 --jobserver-auth=fifo:/var/tmp//GMfifo31029 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/split' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split TMPL=id2_split -j3 --jobserver-auth=fifo:/var/tmp//GMfifo31029 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/split' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/blob_splitter_params.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/split_blob.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/blob_splitter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/blob_splitter_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/blob_splitter_parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/blob_splitter_maker.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/id_range.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/object_splitinfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/asn_sizer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/annot_piece.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/chunk_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/size.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/split_exceptions.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/blob_splitter.cpp -o blob_splitter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/blob_splitter_params.cpp -o blob_splitter_params.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-srcIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/blob_splitter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/blob_splitter.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/split_blob.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/split_blob.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/split_blob.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/blob_splitter_impl.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/blob_splitter_impl.hpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/split_blob.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/blob_splitter_parser.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/blob_splitter_impl.hpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/split_blob.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/blob_splitter_maker.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/blob_splitter_impl.hpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/split_blob.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/id_range.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/id_range.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/object_splitinfo.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/object_splitinfo.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/id_range.cpp:334:12: warning: variable 'row' set but not used [-Wunused-but-set-variable] size_t row = 0; ^ 2 warnings generated. /c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/split_blob.cpp -o split_blob.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/blob_splitter_impl.cpp -o blob_splitter_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/blob_splitter_parser.cpp -o blob_splitter_parser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/blob_splitter_maker.cpp -o blob_splitter_maker.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/id_range.cpp -o id_range.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/object_splitinfo.cpp -o object_splitinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/asn_sizer.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/asn_sizer.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/annot_piece.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/annot_piece.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/id_range.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/chunk_info.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/chunk_info.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/place_id.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/size.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/split/asn_sizer.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/asn_sizer.cpp -o asn_sizer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/annot_piece.cpp -o annot_piece.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/chunk_info.cpp -o chunk_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/size.cpp -o size.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objmgr/split/split_exceptions.cpp -o split_exceptions.o /bin/rm -f libid2_split.a .libid2_split.a.stamp ar cr libid2_split.a blob_splitter.o blob_splitter_params.o split_blob.o blob_splitter_impl.o blob_splitter_parser.o blob_splitter_maker.o id_range.o object_splitinfo.o asn_sizer.o annot_piece.o chunk_info.o size.o split_exceptions.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2_split.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libid2_split.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libid2_split.a /bin/ln -f .id2_split.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.id2_split.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objmgr' /opt/pkg/bin/gmake -C objtools -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56877 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/unit_test_util/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/lds2/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cddalignview/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cddalignview/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cddalignview/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/lds2/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/lds2/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/unit_test_util/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/unit_test_util/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/manip/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/validator/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/test/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/validator/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/validator/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/manip/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/manip/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/asniotest/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/snputil/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/asniotest/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/asniotest/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align/Makefile.in test -f 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT manip/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT validator/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT asniotest/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/manip/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/validator/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT align/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT snputil/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/asniotest/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT uudutil/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/snputil/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT variation/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT writers/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/uudutil/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT import/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/writers/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/variation/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT flatfile/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/import/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/flatfile/Makefile /opt/pkg/bin/gmake -C logging -j3 --jobserver-auth=fifo:/var/tmp//GMfifo35960 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/logging' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/logging TMPL=logging -j3 --jobserver-auth=fifo:/var/tmp//GMfifo39823 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/logging' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/logging TMPL=logging -j3 --jobserver-auth=fifo:/var/tmp//GMfifo39823 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/logging' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/logging TMPL=logging -j3 --jobserver-auth=fifo:/var/tmp//GMfifo39823 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/logging' Updating dependency Updating information dependency for information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/logging/listener.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/logging/message.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/logging/message.cpp -o message.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/logging/listener.cpp -o listener.o /bin/rm -f libxlogging.a .libxlogging.a.stamp ar cr libxlogging.a message.o listener.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxlogging.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxlogging.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxlogging.a /bin/ln -f .xlogging.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xlogging.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/logging' /opt/pkg/bin/gmake -C unit_test_util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo35960 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/unit_test_util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/unit_test_util' /opt/pkg/bin/gmake -C readers -j3 --jobserver-auth=fifo:/var/tmp//GMfifo35960 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/app/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/test/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/unit_test/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/app/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/app/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT app/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers/app/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers/test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers/unit_test/Makefile gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers TMPL=xobjread -j3 --jobserver-auth=fifo:/var/tmp//GMfifo40913 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers TMPL=xobjreadex -j3 --jobserver-auth=fifo:/var/tmp//GMfifo40913 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers TMPL=xobjread -j3 --jobserver-auth=fifo:/var/tmp//GMfifo40913 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers TMPL=xobjreadex -j3 --jobserver-auth=fifo:/var/tmp//GMfifo40913 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers TMPL=xobjread -j3 --jobserver-auth=fifo:/var/tmp//GMfifo40913 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/reader_message.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/reader_message_handler.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/reader_listener.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/format_guess_ex.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/read_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/seqid_validate.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/acc_pattern.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/agp_read.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/agp_seq_entry.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/agp_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/agp_validate_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/cigar.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_formats.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/alnread.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_errors.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_error_reporter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_formatguess.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_fastagap.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_nexus.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta_aln_builder.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta_reader_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/getfeature.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/track_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/reader_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/microarray_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/phrap.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/reader_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/readfeat.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/rm_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/wiggle_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gff3_reader.cpp. Updating dependency information for Updating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gtf_reader.cpp. dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gff3_location_merger.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gtf_location_merger.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gff_base_columns.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gff2_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gff2_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gvf_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/vcf_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/psl_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/psl_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/bed_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/bed_autosql.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/bed_autosql_standard.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/bed_autosql_custom.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/bed_column_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/source_mod_parser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/best_feat_finder.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta_exception.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/agp_converter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/ucscregion_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/struct_cmt_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_error.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/feature_mod_apply.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_to_enum.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/message_listener.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/line_error.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/reader_message.cpp -o reader_message.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/reader_listener.cpp -o reader_listener.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/reader_message_handler.cpp -o rIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/read_util.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/format_guess_ex.cpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/seqid_validate.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. eader_message_handler.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/read_util.cpp -o read_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/format_guess_ex.cpp -o format_guess_ex.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/seqid_validate.cpp -o seqid_validate.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/acc_pattern.cpp -o acc_pattern.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/agp_read.cpp -o agp_read.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/agp_read.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/agp_read.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/agp_seq_entry.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/agp_seq_entry.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/agp_validate_reader.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/cigar.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/cigar.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. E_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/agp_seq_entry.cpp -o agp_seq_entry.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/agp_util.cpp -o agp_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/agp_validate_reader.cpp -o agp_validate_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/cigar.cpp -o cigar.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta.cpp -o fasta.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/fasta.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/alnread.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta.cpp:513:11: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] ids = move(data.ids); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta.cpp:517:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] seqTitles = move(data.titles); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta.cpp:574:26: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_CurrentSeqTitles = move(data.titles); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta.cpp:1493:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] vecLinkEvids.push_back(move(pNewLinkEvid)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta.cpp:1498:39: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] delta_ext.Set().push_back(move(gap_ds)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta.cpp:1522:42: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] bioseq.SetDescr().Set().emplace_back(move(pDesc)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta.cpp:2045:43: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] bioseq.SetDescr().Set().push_back(move(pDesc)); ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_errors.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_error_reporter.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/aln_error_reporter.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_formatguess.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 8 warnings generated. /include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_formats.cpp -o aln_formats.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/alnread.cpp -o alnread.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_errors.cpp -o aln_errors.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_error_reporter.cpp -o aln_error_reporter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_formatguess.cpp -o aln_formatguess.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_util.cpp -o aln_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_reader.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/aln_reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_util.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_reader.cpp:859:39: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] bioseq.SetDescr().Set().push_back(move(pDesc)); ^ std:: 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_fastagap.cpp:53: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 2 warnings generated. gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_reader.cpp -o aln_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner.cpp -o aln_scanner.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_fastagap.cpp -o aln_scanner_fastagap.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp -o aln_scanner_clustal.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_nexus.cpp -o aln_scanner_nexus.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/incluIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_nexus.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta_aln_builder.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. de/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp -o aln_scanner_phylip.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp -o aln_scanner_sequin.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp -o aln_scanner_multalign.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta_aln_builder.cpp -o fasta_aln_builder.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta_reader_utils.cpp -o fasta_reader_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.11 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta_reader_utils.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/fasta.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/getfeature.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/getfeature.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/featuredump.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:93: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/SeqFeatData_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta_reader_utils.cpp:133:15: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] titles = move(data.titles); ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/track_data.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 2 warnings generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/phrap.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/microarray_reader.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 4.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/getfeature.cpp -o getfeature.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/track_data.cpp -o track_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/reader_data.cpp -o reader_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/microarray_reader.cpp -o microarray_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/phrap.cpp -o phrap.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/reader_base.cpp -o reader_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -stIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/reader_base.cpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/readfeat.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/rm_reader.cpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/wiggle_reader.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Annotdesc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Annotdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/rm_reader.cpp:783:12: warning: variable 'record_counter' set but not used [-Wunused-but-set-variable] size_t record_counter = 0; ^ 1 warning generated. 2 warnings generated. 1 warning generated. d=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/readfeat.cpp -o readfeat.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/rm_reader.cpp -o rm_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/wiggle_reader.cpp -o wiggle_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gff3_reader.cpp -o gff3_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gtf_reader.cpp -o gtf_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -DIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gff3_reader.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gff3_location_merger.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gtf_reader.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gtf_location_merger.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gff_base_columns.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/so_map.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gff2_data.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. __RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gff3_location_merger.cpp -o gff3_location_merger.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gtf_location_merger.cpp -o gtf_location_merger.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gff_base_columns.cpp -o gff_base_columns.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gff2_data.cpp -o gff2_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gff2_reader.cpp -o gff2_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gff2_reader.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Int_fuzz.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Int_fuzz_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gvf_reader.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/vcf_reader.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/psl_reader.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/psl_data.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/psl_data.cpp:40: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/psl_data.hpp:88:28: warning: private field 'mpEL' is not used [-Wunused-private-field] CReaderMessageHandler* mpEL; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/bed_reader.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/bed_autosql.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/gvf_reader.cpp -o gvf_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/vcf_reader.cpp -o vcf_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/psl_reader.cpp -o psl_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/psl_data.cpp -o psl_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/bed_reader.cpp -o bed_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/bed_autosql.cpp -o bed_autosql.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/optIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/bed_autosql_standard.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/bed_autosql_custom.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/bed_column_data.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/bed_column_data.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/bed_reader.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/best_feat_finder.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. /pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/bed_autosql_standard.cpp -o bed_autosql_standard.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/bed_autosql_custom.cpp -o bed_autosql_custom.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/bed_column_data.cpp -o bed_column_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/best_feat_finder.cpp -o best_feat_finder.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/source_mod_parser.cpp -o source_mod_parser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/U1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/source_mod_parser.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta_exception.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/fasta_exception.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/agp_converter.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/agp_converter.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/agp_seq_entry.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/ucscregion_reader.cpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/struct_cmt_reader.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_reader.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Bioseq_set.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Bioseq_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. sers/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/fasta_exception.cpp -o fasta_exception.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/agp_converter.cpp -o agp_converter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/ucscregion_reader.cpp -o ucscregion_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/struct_cmt_reader.cpp -o struct_cmt_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_reader.cpp -o mod_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncb1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_reader.cpp:308:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] x_SaveMods(move(accepted_mods), handle_existing, m_Mods); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_reader.cpp:333:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] move(mod_entry.second)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_reader.cpp:336:33: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] dest_mod_list = move(mod_entry.second); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_reader.cpp:346:33: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] dest_mod_list = move(mod_entry.second); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_reader.cpp:352:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] move(mod_entry.second)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_reader.cpp:684:49: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] seq_inst.SetHist().SetReplaces().SetIds() = move(secondary_ids); ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Bioseq_set.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Bioseq_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_reader.cpp:43: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/mod_reader.hpp:47:47: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] CModData(_T1&& name, _T2&& value): m_name{forward<_T1>(name)}, m_value{forward<_T2>(value)} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_reader.cpp:292:17: note: in instantiation of function template specialization 'ncbi::objects::CModData::CModData &, const std::basic_string &>' requested here CModData( mod.GetName(), kEmptyStr); ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_reader.cpp:43: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/mod_reader.hpp:47:76: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] CModData(_T1&& name, _T2&& value): m_name{forward<_T1>(name)}, m_value{forward<_T2>(value)} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/mod_reader.hpp:47:47: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] CModData(_T1&& name, _T2&& value): m_name{forward<_T1>(name)}, m_value{forward<_T2>(value)} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_reader.cpp:513:30: note: in instantiation of function template specialization 'ncbi::objects::CModData::CModData &, const std::basic_string &>' requested here fPostMessage(CModData( canonicalName, kEmptyStr), e.GetMsg(), eDiag_Error, eModSubcode_Undefined); ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_reader.cpp:43: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/mod_reader.hpp:47:76: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] CModData(_T1&& name, _T2&& value): m_name{forward<_T1>(name)}, m_value{forward<_T2>(value)} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/mod_reader.hpp:47:47: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] CModData(_T1&& name, _T2&& value): m_name{forward<_T1>(name)}, m_value{forward<_T2>(value)} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_reader.cpp:526:22: note: in instantiation of function template specialization 'ncbi::objects::CModData::CModData' requested here fPostMessage(CModData("",""), msg, eDiag_Info, eModSubcode_Applied); ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_reader.cpp:43: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/mod_reader.hpp:47:76: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] CModData(_T1&& name, _T2&& value): m_name{forward<_T1>(name)}, m_value{forward<_T2>(value)} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/mod_reader.hpp:47:47: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] CModData(_T1&& name, _T2&& value): m_name{forward<_T1>(name)}, m_value{forward<_T2>(value)} ^ std:: /Library/Developer/CommandLineTools/SDKs/MacOSX11.3.sdk/usr/include/c++/v1/memory:1684:31: note: in instantiation of function template specialization 'ncbi::objects::CModData::CModData' requested here ::new((void*)__p) _Up(_VSTD::forward<_Args>(__args)...); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.3.sdk/usr/include/c++/v1/memory:1562:21: note: in instantiation of function template specialization 'std::allocator>::construct' requested here __a.construct(__p, _VSTD::forward<_Args>(__args)...); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.3.sdk/usr/include/c++/v1/memory:1413:14: note: in instantiation of function template specialization 'std::allocator_traits>>::__construct' requested here {__construct(__has_construct(), ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.3.sdk/usr/include/c++/v1/list:1682:26: note: in instantiation of function template specialization 'std::allocator_traits>>::construct' requested here __node_alloc_traits::construct(__na, _VSTD::addressof(__hold->__value_), _VSTD::forward<_Args>(__args)...); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_reader.cpp:760:22: note: in instantiation of function template specialization 'std::list::emplace_back' requested here mods.emplace_back(name, value); ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_reader.cpp:43: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/mod_reader.hpp:47:76: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] CModData(_T1&& name, _T2&& value): m_name{forward<_T1>(name)}, m_value{forward<_T2>(value)} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/feature_mod_apply.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp:324:47: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_pDescrCache->SetSubtype().push_back(move(pSubSource)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp:348:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] primer_set.Set().push_back(move(pPrimer)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp:373:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] primer_set.Set().push_back(move(pPrimer)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp:424:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] pcr_reaction_set.Set().push_back(move(pPCRReaction)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp:446:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] pcr_reaction_set.Set().push_back(move(pPCRReaction)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp:482:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] pcr_reaction_set.Set().push_back(move(pPCRReaction)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp:515:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] pcr_reaction_set.Set().push_back(move(pPCRReaction)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp:594:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] dbtags.push_back(move(pDbtag)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp:661:47: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] m_pDescrCache->SetOrgMods().push_back(move(pOrgMod)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp:818:49: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] pField->SetData().SetFields().push_back(move(pSubfield)); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp:941:34: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] .push_back(move(pPub)); ^ std:: 15 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/feature_mod_apply.cpp:133:56: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] x_SetProtein().SetData().SetProt().SetName() = move(names); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/feature_mod_apply.cpp:143:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] x_SetProtein().SetData().SetProt().SetEc() = move(ec_numbers); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/feature_mod_apply.cpp:153:60: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] x_SetProtein().SetData().SetProt().SetActivity() = move(activity); ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp:185:10: warning: private field 'm_HasSetTaxid' is not used [-Wunused-private-field] bool m_HasSetTaxid = false; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_to_enum.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_to_enum.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 4 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/message_listener.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 13 warnings generated. 1 warning generated. 1 warning generated. i-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_error.cpp -o mod_error.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp -o descr_mod_apply.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/feature_mod_apply.cpp -o feature_mod_apply.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/mod_to_enum.cpp -o mod_to_enum.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/message_listener.cpp -o message_listener.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/line_error.cpp -o line_error.o /bin/rm -f libxobjread.a .libxobjread.a.stamp ar cr libxobjread.a reader_message.o reader_listener.o reader_message_handler.o read_util.o format_guess_ex.o seqid_validate.o acc_pattern.o agp_read.o agp_seq_entry.o agp_util.o agp_validate_reader.o cigar.o fasta.o aln_formats.o alnread.o aln_errors.o aln_error_reporter.o aln_formatguess.o aln_util.o aln_reader.o aln_scanner.o aln_scanner_fastagap.o aln_scanner_clustal.o aln_scanner_nexus.o aln_scanner_phylip.o aln_scanner_sequin.o aln_scanner_multalign.o fasta_aln_builder.o fasta_reader_utils.o getfeature.o track_data.o reader_data.o microarray_reader.o phrap.o reader_base.o readfeat.o rm_reader.o wiggle_reader.o gff3_reader.o gtf_reader.o gff3_location_merger.o gtf_location_merger.o gff_base_columns.o gff2_data.o gff2_reader.o gvf_reader.o vcf_reader.o psl_reader.o psl_data.o bed_reader.o bed_autosql.o bed_autosql_standard.o bed_autosql_custom.o bed_column_data.o best_feat_finder.o source_mod_parser.o fasta_exception.o agp_converter.o ucscregion_reader.o struct_cmt_reader.o mod_reader.o mod_error.o descr_mod_apply.o feature_mod_apply.o mod_to_enum.o message_listener.o line_error.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjread.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxobjread.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxobjread.a /bin/ln -f .xobjread.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xobjread.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers TMPL=xobjreadex -j3 --jobserver-auth=fifo:/var/tmp//GMfifo40913 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/glimmer_reader.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/glimmer_reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper_builtin.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper.cpp. Updating dependency information for Updating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper_builtin.cpp. dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/glimmer_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper_config.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper_database.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper_scope.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/glimmer_reader.cpp -o glimmer_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper.cpp -o idmapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper_builtin.cpp -o idmapper_builtin.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-sr1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper_config.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper_database.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper_scope.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. c/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper_config.cpp -o idmapper_config.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper_database.cpp -o idmapper_database.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp -o idmapper_gcassembly.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/idmapper_scope.cpp -o idmapper_scope.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp -o source_mod_parser_wrapper.o /bin/rm -f libxobjreadex.a .libxobjreadex.a.stamp ar cr libxobjreadex.a glimmer_reader.o idmapper.o idmapper_builtin.o idmapper_config.o idmapper_database.o idmapper_gcassembly.o idmapper_scope.o source_mod_parser_wrapper.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjreadex.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxobjreadex.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxobjreadex.a /bin/ln -f .xobjreadex.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xobjreadex.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -C app -j3 --jobserver-auth=fifo:/var/tmp//GMfifo40808 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers/app' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers/app' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo40808 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers/test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers/test' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo40808 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers/unit_test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/readers' /opt/pkg/bin/gmake -C blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo35960 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT gene_info_writer/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer/Makefile /opt/pkg/bin/gmake -C seqdb_reader -j3 --jobserver-auth=fifo:/var/tmp//GMfifo65109 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo65626 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo65626 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo65626 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/bioIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp:50: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. logy/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp -o seqdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp -o seqdbbitset.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp -o seqdbfilter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp -o seqdbatlas.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp -o seqdbalias.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/bui1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:2459:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:2998:11: warning: variable 'map_end' set but not used [-Wunused-but-set-variable] TIndx map_end = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. ld/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp -o seqdbcommon.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp -o seqdbfile.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp -o seqdbimpl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp -o seqdbvol.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp -o seqdbvolset.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp -o seqdboidlist.o /Users/pbulkIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:972:9: warning: variable 'found_short' set but not used [-Wunused-but-set-variable] int found_short(-1); ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbtax.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. /build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp -o seqdbisam.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp -o seqdbtax.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp -o seqdbgilistset.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp -o seqdbexpert.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp -o seqdbblob.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-string1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/column_reader.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdb_lmdb.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. s -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp -o seqdbcol.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp -o seqdbgimask.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp -o seqdbobj.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp -o seqdb_lmdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp -o seqdblmdbset.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdb_lmdb.hpp:173:17: warning: private field 'm_FileType' is not used [-Wunused-private-field] ELMDBFileType m_FileType; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp:30: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdb_lmdb.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqidlist_reader.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 1 warning generated. 1 warning generated. D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp -o seqidlist_reader.o /bin/rm -f libseqdb.a .libseqdb.a.stamp ar cr libseqdb.a seqdb.o seqdbbitset.o seqdbfilter.o seqdbatlas.o seqdbalias.o seqdbcommon.o seqdbfile.o seqdbimpl.o seqdbvol.o seqdbvolset.o seqdboidlist.o seqdbisam.o seqdbtax.o seqdbgilistset.o seqdbexpert.o seqdbblob.o seqdbcol.o seqdbgimask.o seqdbobj.o seqdb_lmdb.o seqdblmdbset.o seqidlist_reader.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libseqdb.a /bin/ln -f .seqdb.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.seqdb.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /opt/pkg/bin/gmake -C demo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo65626 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72774 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo72774 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp:316:15: warning: private field 'm_MaxLength' is not used [-Wunused-private-field] const int m_MaxLength; ^ 2 warnings generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=seqdb_demo -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O seqdb_demo.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lseqdb-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o seqdb_demo strip seqdb_demo /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f seqdb_demo /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/seqdb_demo gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo65626 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -j3 --jobserver-auth=fifo:/var/tmp//GMfifo74331 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -j3 --jobserver-auth=fifo:/var/tmp//GMfifo74331 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:114:9: warning: 'GetMemoryUsage' is deprecated [-Wdeprecated-declarations] if (GetMemoryUsage(&mu.total, &mu.resident, &mu.shared)) { ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbi_system.hpp:510:1: note: 'GetMemoryUsage' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=seqdb_perf -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O seqdb_perf.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lseqdb-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -llzo2 -lzstd -lz -lresolv -llmdb -lpthread -lm -Wl,-framework,ApplicationServices -lpthread -o seqdb_perf strip seqdb_perf /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_perf /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f seqdb_perf /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/seqdb_perf gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /opt/pkg/bin/gmake -C seqdb_writer -j3 --jobserver-auth=fifo:/var/tmp//GMfifo65109 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76314 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76314 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76314 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp -o writedb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:1354:9: warning: variable 'offset_pairs_count' set but not used [-Wunused-but-set-variable] int offset_pairs_count = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Align_def.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Align_def_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_isam.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Align_def.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Align_def_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:304:9: warning: variable 'index' set but not used [-Wunused-but-set-variable] int index = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp -o writedb_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp -o writedb_volume.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp -o writedb_files.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp -o writedb_isam.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp -o writedb_gimask.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Align_def.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Align_def_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Align_def.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Align_def_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blastdb/Blast_filter_program.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blastdb/Blast_filter_program_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_writer/taxid_set.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blastdb/Blast_def_line.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blastdb/Blast_def_line_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. /blast/seqdb_writer/writedb_convert.cpp -o writedb_convert.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp -o writedb_general.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp -o writedb_column.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp -o mask_info_registry.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp -o taxid_set.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp -o build_db.o /Users/pbulk/build/biology/ncbi-blast+/woIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/seqloc__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Giimport_id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Giimport_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_writer/impl/criteria.hpp:59: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blastdb/Blast_def_line.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/blastdb/Blast_def_line_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_writer/seqidlist_writer.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdb_lmdb.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. rk/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp -o multisource_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp -o criteria.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp -o writedb_lmdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp -o seqidlist_writer.o /bin/rm -f libwritedb.a .libwritedb.a.stamp ar cr libwritedb.a writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o criteria.o writedb_lmdb.o seqidlist_writer.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libwritedb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libwritedb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libwritedb.a /bin/ln -f .writedb.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.writedb.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76314 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /opt/pkg/bin/gmake -C gene_info_reader -j3 --jobserver-auth=fifo:/var/tmp//GMfifo65109 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -j3 --jobserver-auth=fifo:/var/tmp//GMfifo81575 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -j3 --jobserver-auth=fifo:/var/tmp//GMfifo81575 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -j3 --jobserver-auth=fifo:/var/tmp//GMfifo81575 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp -o gene_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp -o gene_info_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp -o file_utils.o /bin/rm -f libgene_info.a .libgene_info.a.stamp ar cr libgene_info.a gene_info.o gene_info_reader.o file_utils.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgene_info.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libgene_info.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgene_info.a /bin/ln -f .gene_info.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.gene_info.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /opt/pkg/bin/gmake -C demo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo81575 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82481 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82481 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=gene_info_reader -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O gene_info_reader_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lgene_info-static -lxobjutil-static -lseqdb-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -llzo2 -lzstd -lz -lresolv -llmdb -lpthread -lm -Wl,-framework,ApplicationServices -lpthread -o gene_info_reader strip gene_info_reader /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_reader /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f gene_info_reader /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/gene_info_reader gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo81575 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /opt/pkg/bin/gmake -C gene_info_writer -j3 --jobserver-auth=fifo:/var/tmp//GMfifo65109 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer' /opt/pkg/bin/gmake -C services -j3 --jobserver-auth=fifo:/var/tmp//GMfifo65109 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/services TMPL=blast_services -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83672 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/services TMPL=blast_services -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83672 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/services TMPL=blast_services -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83672 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/services/blast_services.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/services/blast_services.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o /bin/rm -f libblast_services.a .libblast_services.a.stamp ar cr libblast_services.a blast_services.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libblast_services.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libblast_services.a /bin/ln -f .blast_services.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.blast_services.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo83672 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/services' /opt/pkg/bin/gmake -C blastdb_format -j3 --jobserver-auth=fifo:/var/tmp//GMfifo65109 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -j3 --jobserver-auth=fifo:/var/tmp//GMfifo84765 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -j3 --jobserver-auth=fifo:/var/tmp//GMfifo84765 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -j3 --jobserver-auth=fifo:/var/tmp//GMfifo84765 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_formatter.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp -o seq_formatter.o /bin/rm -f libblastdb_format.a .libblastdb_format.a.stamp ar cr libblastdb_format.a seq_writer.o blastdb_dataextract.o blastdb_formatter.o seq_formatter.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libblastdb_format.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libblastdb_format.a /bin/ln -f .blastdb_format.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.blastdb_format.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo84765 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/blast' /opt/pkg/bin/gmake -C lds2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo35960 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/lds2' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/lds2' /opt/pkg/bin/gmake -C pubseq_gateway -j3 --jobserver-auth=fifo:/var/tmp//GMfifo35960 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/diag/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/cassandra/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/protobuf/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/cassandra/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/cassandra/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/diag/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/diag/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/protobuf/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/protobuf/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/cache/Makefile.in` /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT diag/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT cassandra/Makefile test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/cache/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/cache/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT protobuf/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/protobuf/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cassandra/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/diag/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT cache/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cache/Makefile /opt/pkg/bin/gmake -C diag -j3 --jobserver-auth=fifo:/var/tmp//GMfifo87708 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/diag' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/diag' /opt/pkg/bin/gmake -C cassandra -j3 --jobserver-auth=fifo:/var/tmp//GMfifo87708 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cassandra' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cassandra' /opt/pkg/bin/gmake -C client -j3 --jobserver-auth=fifo:/var/tmp//GMfifo87708 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/client TMPL=psg_client -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89450 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/client TMPL=psg_client -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89450 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/client TMPL=psg_client -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89450 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp -o psg_client.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp -o psg_client_transport.o /bin/rm -f libpsg_client.a .libpsg_client.a.stamp ar cr libpsg_client.a psg_client.o psg_client_transport.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpsg_client.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libpsg_client.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libpsg_client.a /bin/ln -f .psg_client.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.psg_client.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo89450 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' NOTE: skipping project "test_psg_client_impl" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' NOTE: skipping project "test_psg_client_impl" due to unmet requirements gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /opt/pkg/bin/gmake -C protobuf -j3 --jobserver-auth=fifo:/var/tmp//GMfifo87708 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/protobuf' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/protobuf' /opt/pkg/bin/gmake -C cache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo87708 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cache' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cache' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway' /opt/pkg/bin/gmake -C data_loaders -j3 --jobserver-auth=fifo:/var/tmp//GMfifo35960 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/lds2/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/patcher/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/patcher/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/patcher/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/lds2/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/lds2/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/cdd/Makefile.in` /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT lds2/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT asn_cache/Makefile test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/cdd/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/cdd/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT patcher/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT cdd/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd/Makefile /opt/pkg/bin/gmake -C genbank -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90916 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT pubseq2/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT pubseq/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2/Makefile gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -j3 --jobserver-auth=fifo:/var/tmp//GMfifo92223 export-headers gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -j3 --jobserver-auth=fifo:/var/tmp//GMfifo92223 export-headers gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -j3 --jobserver-auth=fifo:/var/tmp//GMfifo92223 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -j3 --jobserver-auth=fifo:/var/tmp//GMfifo92223 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -j3 --jobserver-auth=fifo:/var/tmp//GMfifo92223 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/writer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp -o dispatcher.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/reader.cpp -o reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecatIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/reader.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/writer.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/writer.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/writer.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/blob_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/blob_id.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/seqref.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/blob_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/blob_id.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. ed-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/writer.cpp -o writer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp -o processors.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp -o wgsmaster.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp -o reader_snp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp -o seqref.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/blob_id.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/blob_id.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. ++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp -o blob_id.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp -o reader_service.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-bl1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp:390:12: warning: variable 'unused_count' set but not used [-Wunused-but-set-variable] size_t unused_count = 0, used_count = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp:390:30: warning: variable 'used_count' set but not used [-Wunused-but-set-variable] size_t unused_count = 0, used_count = 0; ^ 3 warnings generated. ast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp -o incr_time.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp -o info_cache.o /bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp /bin/rm -f libncbi_xreader-dll.dylib .libncbi_xreader-dll.dylib.stamp ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o wgsmaster.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xreader-dll.dylib -o libncbi_xreader-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress dispatcher.o reader.o writer.o processors.o wgsmaster.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxcompress -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.a /bin/ln -f .ncbi_xreader.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.ncbi_xreader.dep /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader-dll.dylib /bin/ln -f .ncbi_xreader-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.ncbi_xreader-dll.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -j3 --jobserver-auth=fifo:/var/tmp//GMfifo92223 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/gbnative.hpp:48: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/general__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp -o gbloader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp -o gbnative.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp -o gbload_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader.cpp -o psg_loader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Split_Info.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqsplit/ID2S_Split_Info_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp -o psg_loader_impl.o /bin/rm -f libncbi_xloader_genbank.a .libncbi_xloader_genbank.a.stamp /bin/rm -f libncbi_xloader_genbank-dll.dylib .libncbi_xloader_genbank-dll.dylib.stamp ar cr libncbi_xloader_genbank.a gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank-dll.dylib -o libncbi_xloader_genbank-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lgeneral -lncbi_xreader-dll -lz -lbz2 -llzo2 -lzstd -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_genbank.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.a /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_genbank-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank-dll.dylib /bin/ln -f .ncbi_xloader_genbank.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.ncbi_xloader_genbank.dep /bin/ln -f .ncbi_xloader_genbank-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.ncbi_xloader_genbank-dll.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -C cache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo92197 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo2627 export-headers gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo2627 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo2627 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/cache/writer_cache.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/writer.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/cache/reader_cache.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp -o reader_cache.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp -o writer_cache.o /bin/rm -f libncbi_xreader_cache.a .libncbi_xreader_cache.a.stamp /bin/rm -f libncbi_xreader_cache-dll.dylib .libncbi_xreader_cache-dll.dylib.stamp ar cr libncbi_xreader_cache.a reader_cache.o writer_cache.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xreader_cache-dll.dylib -o libncbi_xreader_cache-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress reader_cache.o writer_cache.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_cache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_cache.a /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_cache-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_cache-dll.dylib /bin/ln -f .ncbi_xreader_cache.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.ncbi_xreader_cache.dep /bin/ln -f .ncbi_xreader_cache-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.ncbi_xreader_cache-dll.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /opt/pkg/bin/gmake -C pubseq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo92197 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq' /opt/pkg/bin/gmake -C id2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo92197 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4484 export-headers gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4484 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4484 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o /bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp /bin/rm -f libncbi_xreader_id2-dll.dylib .libncbi_xreader_id2-dll.dylib.stamp ar cr libncbi_xreader_id2.a reader_id2.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id2-dll.dylib -o libncbi_xreader_id2-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress reader_id2.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id2.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id2.a /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id2-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id2-dll.dylib /bin/ln -f .ncbi_xreader_id2.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.ncbi_xreader_id2.dep /bin/ln -f .ncbi_xreader_id2-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.ncbi_xreader_id2-dll.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /opt/pkg/bin/gmake -C id1 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo92197 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo5888 export-headers gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo5888 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo5888 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/id1/reader_id1.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o /bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp /bin/rm -f libncbi_xreader_id1-dll.dylib .libncbi_xreader_id1-dll.dylib.stamp ar cr libncbi_xreader_id1.a reader_id1.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1-dll.dylib -o libncbi_xreader_id1-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress reader_id1.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxcompress -lm -Wl,-framework,ApplicationServices -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id1.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.a /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f .ncbi_xreader_id1.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.ncbi_xreader_id1.dep /bin/ln -f libncbi_xreader_id1-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1-dll.dylib /bin/ln -f .ncbi_xreader_id1-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.ncbi_xreader_id1-dll.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /opt/pkg/bin/gmake -C pubseq2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo92197 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2' /opt/pkg/bin/gmake -C gicache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo92197 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo7819 export-headers gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo7819 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo7819 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:289:7: warning: unused variable 'logmsg' [-Wunused-variable] char logmsg[256]; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:635:9: warning: unused variable 'acc_len' [-Wunused-variable] int acc_len; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:833:7: warning: unused variable 'meta' [-Wunused-variable] char meta[512], stime[128]; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:833:18: warning: unused variable 'stime' [-Wunused-variable] char meta[512], stime[128]; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:984:11: warning: unused variable 'gi_len' [-Wunused-variable] int64_t gi_len = 0; ^ 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/gicache/reader_gicache.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gicache -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp -o reader_gicache.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gicache -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c -o gicache.o /bin/rm -f libncbi_xreader_gicache.a .libncbi_xreader_gicache.a.stamp /bin/rm -f libncbi_xreader_gicache-dll.dylib .libncbi_xreader_gicache-dll.dylib.stamp ar cr libncbi_xreader_gicache.a reader_gicache.o gicache.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -m64 -dynamiclib -install_name /opt/pkg/lib/ncbi-tools++/libncbi_xreader_gicache-dll.dylib -o libncbi_xreader_gicache-dll.dylib -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O -fno-common -undefined suppress reader_gicache.o gicache.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -llmdb -lpthread /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_gicache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_gicache.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_gicache.a /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_gicache-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_gicache-dll.dylib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_gicache-dll.dylib /bin/ln -f .ncbi_xreader_gicache.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.ncbi_xreader_gicache.dep /bin/ln -f .ncbi_xreader_gicache-dll.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.ncbi_xreader_gicache-dll.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo92197 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /opt/pkg/bin/gmake -C lds2 -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90916 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2' /opt/pkg/bin/gmake -C blastdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90916 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test/Makefile gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9623 export-headers gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9623 export-headers gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9623 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9623 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9623 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp:144:21: warning: variable 'length' set but not used [-Wunused-but-set-variable] TSeqPos length = m_SeqDB->GetSequence(oid, &buffer); ^ 2 warnings generated. 1 warning generated. 1 warning generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb.a .libncbi_xloader_blastdb.a.stamp ar cr libncbi_xloader_blastdb.a bdbloader.o cached_sequence.o local_blastdb_adapter.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_blastdb.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_blastdb.a /bin/ln -f .ncbi_xloader_blastdb.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.ncbi_xloader_blastdb.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9623 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/blastdb/bdbloader_rmt.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb_rmt.a .libncbi_xloader_blastdb_rmt.a.stamp ar cr libncbi_xloader_blastdb_rmt.a bdbloader_rmt.o remote_blastdb_adapter.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_blastdb_rmt.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_blastdb_rmt.a /bin/ln -f .ncbi_xloader_blastdb_rmt.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.ncbi_xloader_blastdb_rmt.dep gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9554 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /opt/pkg/bin/gmake -C patcher -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90916 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher' /opt/pkg/bin/gmake -C asn_cache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90916 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache' /opt/pkg/bin/gmake -C cdd -j3 --jobserver-auth=fifo:/var/tmp//GMfifo90916 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/data_loaders' /opt/pkg/bin/gmake -C simple -j3 --jobserver-auth=fifo:/var/tmp//GMfifo35960 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/simple' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/simple TMPL=xobjsimple -j3 --jobserver-auth=fifo:/var/tmp//GMfifo14335 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/simple' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/simple TMPL=xobjsimple -j3 --jobserver-auth=fifo:/var/tmp//GMfifo14335 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/simple' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/simple TMPL=xobjsimple -j3 --jobserver-auth=fifo:/var/tmp//GMfifo14335 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/simple/simple_om.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/simple/simple_om.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/simple' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/simple/simple_om.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/simple/simple_om.cpp -o simple_om.o /bin/rm -f libxobjsimple.a .libxobjsimple.a.stamp ar cr libxobjsimple.a simple_om.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjsimple.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxobjsimple.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxobjsimple.a /bin/ln -f .xobjsimple.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xobjsimple.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/simple' /opt/pkg/bin/gmake -C alnmgr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo35960 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/demo/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/demo/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/demo/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT unit_test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT demo/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr/demo/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr TMPL=alnmgr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo15641 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr TMPL=alnmgr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo15641 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr TMPL=alnmgr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo15641 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr' Updating dependency Updating information dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_converters.cpp. for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_builders.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_generators.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_seqid.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_serial.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alndiag.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmap.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmapprint.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmix.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnseq.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnvec.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/sparse_ci.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alntext.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/score_builder_base.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_container.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blasIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_converters.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_generators.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_builders.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/aln_builders.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/pairwise_aln.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/aln_seqid.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_generators.cpp:252:16: warning: variable 'seg' set but not used [-Wunused-but-set-variable] size_t seg = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_seqid.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/aln_seqid.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_serial.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/aln_serial.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/pairwise_aln.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/aln_seqid.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 1 warning generated. t+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_builders.cpp -o aln_builders.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_converters.cpp -o aln_converters.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_generators.cpp -o aln_generators.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_seqid.cpp -o aln_seqid.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_serial.cpp -o aln_serial.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alndiag.cpp -o alndiag.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-depr1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmap.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmapprint.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnmatch.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnseq.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: warning: '&&' within '||' [-Wlogical-op-parentheses] match1->m_ChainScore == match2->m_ChainScore && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: note: place parentheses around the '&&' expression to silence this warning match1->m_ChainScore == match2->m_ChainScore && ^ ( /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: warning: '&&' within '||' [-Wlogical-op-parentheses] (aln_seq1->m_StrandScore > 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: note: place parentheses around the '&&' expression to silence this warning (aln_seq1->m_StrandScore > 0 && ^ ( /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:194:59: warning: '&&' within '||' [-Wlogical-op-parentheses] aln_seq1->m_StrandScore < 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:194:59: note: place parentheses around the '&&' expression to silence this warning aln_seq1->m_StrandScore < 0 && ^ ( /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: warning: '&&' within '||' [-Wlogical-op-parentheses] aln_seq2->m_StrandScore > 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: note: place parentheses around the '&&' expression to silence this warning aln_seq2->m_StrandScore > 0 && ^ ( /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: warning: '&&' within '||' [-Wlogical-op-parentheses] aln_seq2->m_StrandScore < 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: note: place parentheses around the '&&' expression to silence this warning aln_seq2->m_StrandScore < 0 && ^ ( 1 warning generated. 1 warning generated. 6 warnings generated. ecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmap.cpp -o alnmap.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmapprint.cpp -o alnmapprint.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp -o alnmatch.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp -o alnmerger.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-bIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnmerger.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnmix.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnmix.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnpos_ci.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnsegments.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnseq.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnseq.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnvec.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: warning: '&&' within '||' [-Wlogical-op-parentheses] if (plus && prev_start_plus_len < start || ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: note: place parentheses around the '&&' expression to silence this warning if (plus && prev_start_plus_len < start || ^ ( ) /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp:312:28: warning: '&&' within '||' [-Wlogical-op-parentheses] !plus && start_plus_len < (TSeqPos) prev_start) { ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp:312:28: note: place parentheses around the '&&' expression to silence this warning !plus && start_plus_len < (TSeqPos) prev_start) { ^ ( ) 3 warnings generated. 1 warning generated. 1 warning generated. last-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp -o alnsegments.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -WIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnvec_iterator.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/pairwise_aln.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/aln_seqid.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: warning: '&&' within '||' [-Wlogical-op-parentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ~~ ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: note: place parentheses around the '&&' expression to silence this warning if (left_seg < 0 || seg > right_seg && right_seg > 0) { ^ ( ) /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: warning: '&&' within '||' [-Wlogical-op-parentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ~~ ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: note: place parentheses around the '&&' expression to silence this warning if (left_seg < 0 || seg > right_seg && right_seg > 0) { ^ ( ) 1 warning generated. 3 warnings generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/sparse_aln.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/sparse_ci.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/sparse_ci.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/sparse_aln.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alntext.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/general__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. all -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/score_builder_base.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/score_builder_base.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_container.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/aln_container.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. NAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/alnmgr/aln_container.cpp -o aln_container.o /bin/rm -f libxalnmgr.a .libxalnmgr.a.stamp ar cr libxalnmgr.a aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o aln_container.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxalnmgr.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxalnmgr.a /bin/ln -f .xalnmgr.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xalnmgr.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr' /opt/pkg/bin/gmake -C demo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo15641 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr/demo' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr/demo' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo15641 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/alnmgr' /opt/pkg/bin/gmake -C cddalignview -j3 --jobserver-auth=fifo:/var/tmp//GMfifo35960 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cddalignview' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cddalignview' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo35960 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/test' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/test' /opt/pkg/bin/gmake -C manip -j3 --jobserver-auth=fifo:/var/tmp//GMfifo35960 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/manip' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/manip' /opt/pkg/bin/gmake -C eutils -j3 --jobserver-auth=fifo:/var/tmp//GMfifo35960 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/linkout/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/linkout/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/linkout/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT linkout/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/linkout/Makefile /opt/pkg/bin/gmake -C egquery -j3 --jobserver-auth=fifo:/var/tmp//GMfifo25216 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/egquery && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh --dtd egquery all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. File egquery.module not found. Using defaults... /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo26130 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=egquery MODULE_PATH=objtools/eutils/egquery MODULE_ASN=egquery.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/egquery' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m egquery.dtd -M "" -oA \ -oc egquery -or objtools/eutils/egquery -odi -od egquery.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd egquery.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/egquery' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/egquery' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/egquery' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/egquery TMPL=egquery -j3 --jobserver-auth=fifo:/var/tmp//GMfifo26130 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/egquery TMPL=egquery -j3 --jobserver-auth=fifo:/var/tmp//GMfifo26130 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/egquery TMPL=egquery -j3 --jobserver-auth=fifo:/var/tmp//GMfifo26130 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/egquery/egquery__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/egquery/EGQueryResult.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/egquery/EGQueryResult.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/egquery/EGQueryResult_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/egquery/egquery___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/egquery/EGQueryResult_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' Updating dependency information for Updating dependency /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/egquery/egquery___.cpp. information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/egquery/egquery__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/egquery/egquery__.cpp -o egquery__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/egquery/egquery___.cpp -o egquery___.o /bin/rm -f libegquery.a .libegquery.a.stamp ar cr libegquery.a egquery__.o egquery___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libegquery.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libegquery.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libegquery.a /bin/ln -f .egquery.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.egquery.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' /opt/pkg/bin/gmake -C elink -j3 --jobserver-auth=fifo:/var/tmp//GMfifo25216 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/elink && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh --dtd elink all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. File elink.module not found. Using defaults... /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo27437 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=elink MODULE_PATH=objtools/eutils/elink MODULE_ASN=elink.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/elink' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m elink.dtd -M "" -oA \ -oc elink -or objtools/eutils/elink -odi -od elink.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd elink.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/elink' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/elink' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/elink' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/elink TMPL=elink -j3 --jobserver-auth=fifo:/var/tmp//GMfifo27437 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/elink TMPL=elink -j3 --jobserver-auth=fifo:/var/tmp//GMfifo27437 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/elink TMPL=elink -j3 --jobserver-auth=fifo:/var/tmp//GMfifo27437 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/elink/elink__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/elink/ELinkResult.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/elink/ELinkResult.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/elink/ELinkResult_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/elink/elink___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/elink/ELinkResult_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' Updating dependency information for Updating dependency information /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/elink/elink___.cpp. for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/elink/elink__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/elink/elink__.cpp -o elink__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/elink/elink___.cpp -o elink___.o /bin/rm -f libelink.a .libelink.a.stamp ar cr libelink.a elink__.o elink___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libelink.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libelink.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libelink.a /bin/ln -f .elink.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.elink.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' /opt/pkg/bin/gmake -C epost -j3 --jobserver-auth=fifo:/var/tmp//GMfifo25216 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/epost && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh --dtd epost all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. File epost.module not found. Using defaults... /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo28565 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=epost MODULE_PATH=objtools/eutils/epost MODULE_ASN=epost.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/epost' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m epost.dtd -M "" -oA \ -oc epost -or objtools/eutils/epost -odi -od epost.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd epost.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/epost' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/epost' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/epost' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/epost TMPL=epost -j3 --jobserver-auth=fifo:/var/tmp//GMfifo28565 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/epost TMPL=epost -j3 --jobserver-auth=fifo:/var/tmp//GMfifo28565 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/epost TMPL=epost -j3 --jobserver-auth=fifo:/var/tmp//GMfifo28565 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/epost/epost__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/epost/EPostResult.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/epost/EPostResult.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/epost/EPostResult_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/epost/epost___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/epost/EPostResult_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/epost/epost__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/epost/epost___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/epost/epost__.cpp -o epost__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/epost/epost___.cpp -o epost___.o /bin/rm -f libepost.a .libepost.a.stamp ar cr libepost.a epost__.o epost___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libepost.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libepost.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libepost.a /bin/ln -f .epost.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.epost.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' /opt/pkg/bin/gmake -C esearch -j3 --jobserver-auth=fifo:/var/tmp//GMfifo25216 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esearch && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh --dtd esearch all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. File esearch.module not found. Using defaults... /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo29940 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=esearch MODULE_PATH=objtools/eutils/esearch MODULE_ASN=esearch.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esearch' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m esearch.dtd -M "" -oA \ -oc esearch -or objtools/eutils/esearch -odi -od esearch.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd esearch.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esearch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esearch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esearch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esearch TMPL=esearch -j3 --jobserver-auth=fifo:/var/tmp//GMfifo29940 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esearch TMPL=esearch -j3 --jobserver-auth=fifo:/var/tmp//GMfifo29940 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esearch TMPL=esearch -j3 --jobserver-auth=fifo:/var/tmp//GMfifo29940 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esearch/esearch__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esearch/ESearchResult.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/esearch/ESearchResult.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/esearch/ESearchResult_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esearch/esearch___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esearch/ESearchResult_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esearch/esearch__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esearch/esearch___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esearch/esearch__.cpp -o esearch__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esearch/esearch___.cpp -o esearch___.o /bin/rm -f libesearch.a .libesearch.a.stamp ar cr libesearch.a esearch__.o esearch___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libesearch.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libesearch.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libesearch.a /bin/ln -f .esearch.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.esearch.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' /opt/pkg/bin/gmake -C espell -j3 --jobserver-auth=fifo:/var/tmp//GMfifo25216 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/espell && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh --dtd espell all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. File espell.module not found. Using defaults... /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo31522 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=espell MODULE_PATH=objtools/eutils/espell MODULE_ASN=espell.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/espell' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m espell.dtd -M "" -oA \ -oc espell -or objtools/eutils/espell -odi -od espell.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd espell.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/espell' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/espell' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/espell' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/espell TMPL=espell -j3 --jobserver-auth=fifo:/var/tmp//GMfifo31522 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/espell TMPL=espell -j3 --jobserver-auth=fifo:/var/tmp//GMfifo31522 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/espell TMPL=espell -j3 --jobserver-auth=fifo:/var/tmp//GMfifo31522 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/espell/espell__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/espell/ESpellResult.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/espell/ESpellResult.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/espell/ESpellResult_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/espell/espell___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/espell/ESpellResult_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/espell/espell__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/espell/espell___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/espell/espell__.cpp -o espell__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/espell/espell___.cpp -o espell___.o /bin/rm -f libespell.a .libespell.a.stamp ar cr libespell.a espell__.o espell___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libespell.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libespell.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libespell.a /bin/ln -f .espell.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.espell.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' /opt/pkg/bin/gmake -C esummary -j3 --jobserver-auth=fifo:/var/tmp//GMfifo25216 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esummary && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh --dtd esummary all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. File esummary.module not found. Using defaults... /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo33005 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=esummary MODULE_PATH=objtools/eutils/esummary MODULE_ASN=esummary.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esummary' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m esummary.dtd -M "" -oA \ -oc esummary -or objtools/eutils/esummary -odi -od esummary.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd esummary.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esummary' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esummary' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esummary' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esummary TMPL=esummary -j3 --jobserver-auth=fifo:/var/tmp//GMfifo33005 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esummary TMPL=esummary -j3 --jobserver-auth=fifo:/var/tmp//GMfifo33005 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esummary TMPL=esummary -j3 --jobserver-auth=fifo:/var/tmp//GMfifo33005 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esummary/esummary__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esummary/DocSum.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/esummary/DocSum.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/esummary/Item.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/esummary/Item_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esummary/esummary___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esummary/DocSum_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esummary/esummary__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esummary/esummary___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esummary/esummary__.cpp -o esummary__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/esummary/esummary___.cpp -o esummary___.o /bin/rm -f libesummary.a .libesummary.a.stamp ar cr libesummary.a esummary__.o esummary___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libesummary.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libesummary.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libesummary.a /bin/ln -f .esummary.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.esummary.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' /opt/pkg/bin/gmake -C linkout -j3 --jobserver-auth=fifo:/var/tmp//GMfifo25216 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/linkout' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/linkout' /opt/pkg/bin/gmake -C einfo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo25216 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/einfo && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh --dtd einfo all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. File einfo.module not found. Using defaults... /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo34566 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=einfo MODULE_PATH=objtools/eutils/einfo MODULE_ASN=einfo.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/einfo' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m einfo.dtd -M "" -oA \ -oc einfo -or objtools/eutils/einfo -odi -od einfo.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd einfo.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/einfo' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/einfo' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/einfo' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/einfo TMPL=einfo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo34566 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/einfo TMPL=einfo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo34566 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/einfo TMPL=einfo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo34566 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/einfo/einfo__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/einfo/DbInfo.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/einfo/DbInfo.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/einfo/DbInfo_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/einfo/einfo___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/einfo/DbInfo_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/einfo/einfo___.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/einfo/einfo__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/einfo/einfo__.cpp -o einfo__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/einfo/einfo___.cpp -o einfo___.o /bin/rm -f libeinfo.a .libeinfo.a.stamp ar cr libeinfo.a einfo__.o einfo___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libeinfo.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libeinfo.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libeinfo.a /bin/ln -f .einfo.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.einfo.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' /opt/pkg/bin/gmake -C uilist -j3 --jobserver-auth=fifo:/var/tmp//GMfifo25216 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/uilist && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh --dtd uilist all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. File uilist.module not found. Using defaults... /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo36611 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=uilist MODULE_PATH=objtools/eutils/uilist MODULE_ASN=uilist.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/uilist' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m uilist.dtd -M "" -oA \ -oc uilist -or objtools/eutils/uilist -odi -od uilist.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd uilist.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/uilist' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/uilist' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/uilist' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/uilist TMPL=uilist -j3 --jobserver-auth=fifo:/var/tmp//GMfifo36611 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/uilist TMPL=uilist -j3 --jobserver-auth=fifo:/var/tmp//GMfifo36611 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/uilist TMPL=uilist -j3 --jobserver-auth=fifo:/var/tmp//GMfifo36611 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/uilist/uilist__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/uilist/IdList.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/uilist/IdList.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/uilist/IdList_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/uilist/uilist___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/uilist/IdList_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' Updating dependency information for Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/uilist/uilist__.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/uilist/uilist___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/uilist/uilist__.cpp -o uilist__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/uilist/uilist___.cpp -o uilist___.o /bin/rm -f libuilist.a .libuilist.a.stamp ar cr libuilist.a uilist__.o uilist___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libuilist.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libuilist.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libuilist.a /bin/ln -f .uilist.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.uilist.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' /opt/pkg/bin/gmake -C ehistory -j3 --jobserver-auth=fifo:/var/tmp//GMfifo25216 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/ehistory && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh --dtd ehistory all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. File ehistory.module not found. Using defaults... /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo39134 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=ehistory MODULE_PATH=objtools/eutils/ehistory MODULE_ASN=ehistory.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/ehistory' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m ehistory.dtd -M "" -oA \ -oc ehistory -or objtools/eutils/ehistory -odi -od ehistory.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd ehistory.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/ehistory' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/ehistory' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/ehistory' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/ehistory TMPL=ehistory -j3 --jobserver-auth=fifo:/var/tmp//GMfifo39134 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/ehistory TMPL=ehistory -j3 --jobserver-auth=fifo:/var/tmp//GMfifo39134 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/ehistory TMPL=ehistory -j3 --jobserver-auth=fifo:/var/tmp//GMfifo39134 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/ehistory/ehistory__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/ehistory/EHistoryItem.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/ehistory/EHistoryItem.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/ehistory/EHistoryItem_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/ehistory/ehistory___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/ehistory/EHistoryItem_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/ehistory/ehistory__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/ehistory/ehistory___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/ehistory/ehistory__.cpp -o ehistory__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/ehistory/ehistory___.cpp -o ehistory___.o /bin/rm -f libehistory.a .libehistory.a.stamp ar cr libehistory.a ehistory__.o ehistory___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libehistory.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libehistory.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libehistory.a /bin/ln -f .ehistory.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.ehistory.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' /opt/pkg/bin/gmake -C efetch -j3 --jobserver-auth=fifo:/var/tmp//GMfifo25216 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch/test/Makefile cd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/new_module.sh --xsd efetch all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. File efetch.module not found. Using defaults... /opt/pkg/bin/gmake -j3 --jobserver-auth=fifo:/var/tmp//GMfifo40802 -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.module MODULE=efetch MODULE_PATH=objtools/eutils/efetch MODULE_ASN=efetch.xsd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build DATATOOL=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib' MODULE_SEARCH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src all gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch' DYLD_LIBRARY_PATH=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/datatool -oR /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++ \ -opm /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src -m efetch.xsd -M "" -oA \ -oc efetch -or objtools/eutils/efetch -odi -od efetch.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd efetch.dump \ datatool: 2.23.0 gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch TMPL=efetch -j3 --jobserver-auth=fifo:/var/tmp//GMfifo40802 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch TMPL=efetch -j3 --jobserver-auth=fifo:/var/tmp//GMfifo40802 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch TMPL=efetch -j3 --jobserver-auth=fifo:/var/tmp//GMfifo40802 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch/efetch__.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch/Abs.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/efetch/Abs.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/efetch/Abs_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch/efetch___.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch/Abs_.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch/efetch__.cpp:282: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch/PubmedArticle.cpp:486:81: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] if (!affiliation.empty()) affiliations.emplace_back(move(affiliation)); ^ std:: 2 warnings generated. 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch/efetch__.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch/efetch___.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch/efetch__.cpp -o efetch__.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/efetch/efetch___.cpp -o efetch___.o /bin/rm -f libefetch.a .libefetch.a.stamp ar cr libefetch.a efetch__.o efetch___.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libefetch.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libefetch.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libefetch.a /bin/ln -f .efetch.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.efetch.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo40802 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch/test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch/test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /opt/pkg/bin/gmake -C api -j3 --jobserver-auth=fifo:/var/tmp//GMfifo25216 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api TMPL=eutils -j3 --jobserver-auth=fifo:/var/tmp//GMfifo55397 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api TMPL=eutils -j3 --jobserver-auth=fifo:/var/tmp//GMfifo55397 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api TMPL=eutils -j3 --jobserver-auth=fifo:/var/tmp//GMfifo55397 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/efetch.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/efetch.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/einfo.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/einfo.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/eutils.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/api' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/eutils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/einfo.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/efetch.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/esearch.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/egquery.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/epost.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/elink.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/esummary.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/espell.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/ehistory.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/eutils.cpp -o eutils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/efetch.cpp -o efetch.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/einfo.cpp -o einfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOUR1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/esearch.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/esearch.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/egquery.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/egquery.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/epost.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/epost.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. CE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/esearch.cpp -o esearch.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/egquery.cpp -o egquery.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/epost.cpp -o epost.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/elink.cpp -o elink.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/esummary.cpp -o esummary.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_IIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/esummary.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/esummary.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/elink.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/elink.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/espell.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/espell.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/ehistory.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/ehistory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. D=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/espell.cpp -o espell.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/eutils/api/ehistory.cpp -o ehistory.o /bin/rm -f libeutils.a .libeutils.a.stamp ar cr libeutils.a eutils.o efetch.o einfo.o esearch.o egquery.o epost.o elink.o esummary.o espell.o ehistory.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libeutils.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libeutils.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libeutils.a /bin/ln -f .eutils.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.eutils.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/eutils' /opt/pkg/bin/gmake -C edit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo35960 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/unit_test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/pubmed_fetch/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/pubmed_citmatch/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/pubmed_citmatch/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/pubmed_citmatch/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/unit_test/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/pubmed_fetch/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/pubmed_fetch/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/test_remote_updater/Makefile.in` /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT unit_test/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT pubmed_citmatch/Makefile test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/test_remote_updater/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/test_remote_updater/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT pubmed_fetch/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit/pubmed_citmatch/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit/unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit/pubmed_fetch/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test_remote_updater/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit/test_remote_updater/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit TMPL=edit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59818 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit TMPL=edit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59818 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit TMPL=edit -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59818 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit' Updating dependency Updating information dependency for information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/promote.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/gene_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/autodef_with_tax.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/field_handler.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/apply_object.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/string_constraint.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/seqid_guesser.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/dblink_field.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/struc_comm_field.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/text_desc_field.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/gb_block_field.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/link_cds_mrna.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/cds_fix.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/loc_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/mail_report.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/feattable_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/gaps_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/source_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/rna_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/remote_updater.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/mla_updater.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/eutils_updater.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/parse_text_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/gap_trim.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/publication_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/external_annots.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/misc/sequence_macros.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/biblio/biblio_macros.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/misc/sequence_util_macros.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/promote.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/gene_utils.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/sequence.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/promote.cpp:224:34: warning: 'TranslateCdregion' is deprecated [-Wdeprecated-declarations] CCdregion_translate::TranslateCdregion(data, ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/sequence.hpp:965:5: note: 'TranslateCdregion' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 1 warning generated. 2.14.0+-src/c++/src/objtools/edit/feature_propagate.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/text_object_description.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/seq_edit.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/pub_fix.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/huge_asn_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/huge_file.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/huge_file_process.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/huge_asn_loader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/huge_asn_macro_reader.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/gene_utils.cpp -o gene_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp -o seq_entry_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/promote.cpp -o promote.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A9/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2185:14: warning: unused variable 'cds_range' [-Wunused-variable] auto cds_range = copy_feat->GetLocation().GetTotalRange(); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2459:13: warning: 5 enumeration values not handled in switch: 'eSeqSubMap', 'eSeqRef', 'eSeqEnd'... [-Wswitch] switch (seqmap_ci.GetType()) { ^~~~~~~~~~~~~~~~~~~ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2459:13: note: add missing switch cases switch (seqmap_ci.GetType()) { ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/autodef_with_tax.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/autodef_with_tax.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/autodef.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BioSource.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/BioSource_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/field_handler.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/apply_object.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/string_constraint.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/string_constraint.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Dbtag.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Dbtag_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 5-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/autodef_with_tax.cpp -o autodef_with_tax.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/field_handler.cpp -o field_handler.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/apply_object.cpp -o apply_object.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/string_constraint.cpp -o string_constraint.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/seqid_guesser.cpp -o seqid_guesser.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/dblink_field.cpp -o dblink_field.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fp/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:92:44: warning: 'Find' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbistr.hpp:2026:5: note: 'Find' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:171:40: warning: 'Find' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbistr.hpp:2026:5: note: 'Find' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/dblink_field.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Dbtag.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Dbtag_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/struc_comm_field.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialimpl.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stltypes.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/text_desc_field.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/gb_block_field.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/link_cds_mrna.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/RNA_ref.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/RNA_ref_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. ascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/struc_comm_field.cpp -o struc_comm_field.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/text_desc_field.cpp -o text_desc_field.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/gb_block_field.cpp -o gb_block_field.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/link_cds_mrna.cpp -o link_cds_mrna.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/cds_fix.cpp -o cds_fix.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/bIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/cds_fix.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/cds_fix.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/loc_edit.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/loc_edit.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/mail_report.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/mail_report.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqtable/Seq_table.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqtable/Seq_table_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/feattable_edit.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/gaps_edit.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/gaps_edit.cpp:148:17: warning: variable 'current' set but not used [-Wunused-but-set-variable] TSeqPos current = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/gaps_edit.cpp:396:75: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] gap.SetSeq_data().SetGap().SetLinkage_evidence().emplace_back(move(pEvidence)); ^ std:: 3 warnings generated. uild/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/loc_edit.cpp -o loc_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/mail_report.cpp -o mail_report.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/feattable_edit.cpp -o feattable_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/gaps_edit.cpp -o gaps_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/source_edit.cpp -o source_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/rna_edit.cppIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/source_edit.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/source_edit.hpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/rna_edit.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/seqid_guesser.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/remote_updater.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon3/taxon3.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon3/itaxon3.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Org_ref.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Org_ref_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/mla_updater.cpp:2: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/mla_updater.hpp:4: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mla/mla_client.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/mla/mla_client_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/eutils_updater.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/eutils_updater.hpp:4: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/eutils/api/eutils.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/remote_updater.cpp:360:5: warning: 'UpdateOrgFromTaxon' is deprecated [-Wdeprecated-declarations] UpdateOrgFromTaxon(m_logger, desc); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/remote_updater.hpp:115:5: note: 'UpdateOrgFromTaxon' has been explicitly marked deprecated here NCBI_DEPRECATED void UpdateOrgFromTaxon(FLogger f_logger, CSeqdesc& obj); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/remote_updater.cpp:605:5: warning: 'UpdateOrgFromTaxon' is deprecated [-Wdeprecated-declarations] UpdateOrgFromTaxon(m_logger, entry); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/remote_updater.hpp:113:5: note: 'UpdateOrgFromTaxon' has been explicitly marked deprecated here NCBI_DEPRECATED void UpdateOrgFromTaxon(FLogger f_logger, CSeq_entry& entry); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 1 warning generated. 1 warning generated. 3 warnings generated. -o rna_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/remote_updater.cpp -o remote_updater.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/mla_updater.cpp -o mla_updater.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/eutils_updater.cpp -o eutils_updater.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/parse_text_options.cpp -o parse_text_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/publication_edit.cpp -o publication_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGE/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/parse_text_options.cpp:47:21: warning: 'Find' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(str, pattern, pos, NPOS, NStr::eFirst, str_case); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbistr.hpp:2026:5: note: 'Find' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/publication_edit.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Name_std.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Name_std_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/gap_trim.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/gap_trim.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/external_annots.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/feature_propagate.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Cdregion.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Cdregion_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/text_object_description.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/seq_edit.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. FILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/gap_trim.cpp -o gap_trim.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/external_annots.cpp -o external_annots.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/feature_propagate.cpp -o feature_propagate.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/text_object_description.cpp -o text_object_description.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/seq_edit.cpp -o seq_edit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/n/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/text_object_description.cpp:336:15: warning: unused function 'GetTextObjectDescription' [-Wunused-function] static string GetTextObjectDescription(const CSeq_feat& seq_feat, CScope& scope, const string& product) ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/pub_fix.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/biblio/ArticleId.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/biblio/ArticleId_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/huge_asn_reader.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/huge_asn_reader.cpp:385:17: warning: lambda capture 'context' is not used [-Wunused-lambda-capture] [this, &context](CObjectIStream& in, const CObjectTypeInfo& type) ~~~^~~~~~~ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/huge_file.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/huge_file_process.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/huge_asn_loader.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/huge_asn_loader.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/huge_asn_macro_reader.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/huge_asn_macro_reader.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/huge_asn_reader.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. cbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/pub_fix.cpp -o pub_fix.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/huge_asn_reader.cpp -o huge_asn_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/huge_file.cpp -o huge_file.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/huge_file_process.cpp -o huge_file_process.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/huge_asn_loader.cpp -o huge_asn_loader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/edit/huge_asn_macro_reader.cpp -o huge_asn_macro_reader.o /bin/rm -f libxobjedit.a .libxobjedit.a.stamp ar cr libxobjedit.a gene_utils.o seq_entry_edit.o promote.o autodef_with_tax.o field_handler.o apply_object.o string_constraint.o seqid_guesser.o dblink_field.o struc_comm_field.o text_desc_field.o gb_block_field.o link_cds_mrna.o cds_fix.o loc_edit.o mail_report.o feattable_edit.o gaps_edit.o source_edit.o rna_edit.o remote_updater.o mla_updater.o eutils_updater.o parse_text_options.o publication_edit.o gap_trim.o external_annots.o feature_propagate.o text_object_description.o seq_edit.o pub_fix.o huge_asn_reader.o huge_file.o huge_file_process.o huge_asn_loader.o huge_asn_macro_reader.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjedit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxobjedit.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxobjedit.a /bin/ln -f .xobjedit.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xobjedit.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59818 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit/unit_test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit/unit_test' /opt/pkg/bin/gmake -C pubmed_fetch -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59818 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit/pubmed_fetch' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit/pubmed_fetch' /opt/pkg/bin/gmake -C pubmed_citmatch -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59818 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit/pubmed_citmatch' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit/pubmed_citmatch' /opt/pkg/bin/gmake -C test_remote_updater -j3 --jobserver-auth=fifo:/var/tmp//GMfifo59818 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit/test_remote_updater' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit/test_remote_updater' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/edit' /opt/pkg/bin/gmake -C cleanup -j3 --jobserver-auth=fifo:/var/tmp//GMfifo35960 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup/test/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup TMPL=cleanup -j3 --jobserver-auth=fifo:/var/tmp//GMfifo74777 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup TMPL=cleanup -j3 --jobserver-auth=fifo:/var/tmp//GMfifo74777 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup TMPL=cleanup -j3 --jobserver-auth=fifo:/var/tmp//GMfifo74777 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup_utils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup_author.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup_pub.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/fix_feature_id.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup_message.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/huge_file_cleanup.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/influenza_set.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp -o autogenerated_cleanup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp -o autogenerated_extended_cleanup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILEIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:34: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.hpp:111:7: warning: private field 'm_Dummy' is not used [-Wunused-private-field] int m_Dummy; ^ 2 warnings generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup_utils.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup_utils.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. _OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup.cpp -o cleanup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup_utils.cpp -o cleanup_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp -o gene_qual_normalization.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp -o cleanup_user_object.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup_author.cpp -o cleanup_author.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup_author.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup_pub.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/misc/sequence_macros.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/biblio/biblio_macros.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/misc/sequence_util_macros.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_ci.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/fix_feature_id.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Feat_id.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Feat_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/fix_feature_id.cpp:118:21: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical] pXref->GetId().IsLocal() & ^~~~~~~~~~~~~~~~~~~~~~~~~~ && /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/fix_feature_id.cpp:118:21: note: cast one or both operands to int to silence this warning 1 warning generated. 2 warnings generated. work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup_pub.cpp -o cleanup_pub.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp -o newcleanupp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp -o capitalization_string.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/fix_feature_id.cpp -o fix_feature_id.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/cleanup_message.cpp -o cleanup_message.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/huge_file_cleanup.cpp -o huge_file_cleanup.o /Users/pbulk/build/bioIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/huge_file_cleanup.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/cleanup/huge_file_cleanup.hpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/edit/huge_asn_reader.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/influenza_set.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/influenza_set.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. logy/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/cleanup/influenza_set.cpp -o influenza_set.o /bin/rm -f libxcleanup.a .libxcleanup.a.stamp ar cr libxcleanup.a autogenerated_cleanup.o autogenerated_extended_cleanup.o cleanup.o cleanup_utils.o gene_qual_normalization.o cleanup_user_object.o cleanup_author.o cleanup_pub.o newcleanupp.o capitalization_string.o fix_feature_id.o cleanup_message.o huge_file_cleanup.o influenza_set.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcleanup.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxcleanup.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxcleanup.a /bin/ln -f .xcleanup.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xcleanup.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo74777 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup/test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/cleanup' /opt/pkg/bin/gmake -C format -j3 --jobserver-auth=fifo:/var/tmp//GMfifo35960 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/format' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format TMPL=xformat -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82185 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format TMPL=xformat -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82185 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format TMPL=xformat -j3 --jobserver-auth=fifo:/var/tmp//GMfifo82185 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/format' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/accession_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/basecount_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/comment_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/contig_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/date_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/dbsource_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/defline_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/feature_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/genome_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/ctrl_items.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/keywords_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/locus_item.cpp. Updating Updating dependency dependency information information for for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/reference_item.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/primary_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/segment_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/sequence_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/source_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/version_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/wgs_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/tsa_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/flat_seqloc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/qualifiers.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/context.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/gather_items.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/embl_gather.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/genbank_gather.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/flat_file_generator.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/item_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/embl_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/genbank_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/format_item_ostream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/item_ostream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/ostream_text_ostream.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/origin_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/ftable_gather.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/ftable_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/gbseq_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/alignment_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/flat_file_config.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/gap_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/genome_project_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/sam_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/cigar_formatter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/gather_iter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/html_anchor_item.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/inst_info_map.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/gene_finder.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/flat_qual_slots.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/accession_item.cpp -o accession_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=6In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/accession_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/comment_item.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/Seq_feat_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/basecount_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/comment_item.cpp:469:16: warning: unused variable 'is_html' [-Wunused-variable] const bool is_html = ctx.Config().DoHTML(); ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/contig_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Delta_ext.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Delta_ext_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/date_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/dbsource_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Dbtag.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Dbtag_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 4 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/basecount_item.cpp -o basecount_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/comment_item.cpp -o comment_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/contig_item.cpp -o contig_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/date_item.cpp -o date_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/dbsource_item.cpp -o dbsource_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/feature_item.cpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/defline_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/sequence.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/genome_item.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/text_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/ctrl_items.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/keywords_item.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqblock/PIR_block.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqblock/PIR_block_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/locus_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. _SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/defline_item.cpp -o defline_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/feature_item.cpp -o feature_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/genome_item.cpp -o genome_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/ctrl_items.cpp -o ctrl_items.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/keywords_item.cpp -o keywords_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/locus_item.cpp -o locus_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/primary_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Dbtag.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Dbtag_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/reference_item.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/segment_item.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/text_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/sequence_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/primary_item.cpp -o primary_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/reference_item.cpp -o reference_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/segment_item.cpp -o segment_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/sequence_item.cpp -o sequence_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/source_item.cpp -o source_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/UseIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/source_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqblock/GB_block.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqblock/GB_block_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/version_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/wgs_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/tsa_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/flat_seqloc.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Int_fuzz.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Int_fuzz_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/qualifiers.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Dbtag.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Dbtag_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. rs/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/version_item.cpp -o version_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/wgs_item.cpp -o wgs_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/tsa_item.cpp -o tsa_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/flat_seqloc.cpp -o flat_seqloc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/qualifiers.cpp -o qualifiers.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/formaIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/context.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/qualifiers.cpp:1105:10: warning: unused variable 'bHtml' [-Wunused-variable] bool bHtml = ctx.Config().DoHTML(); ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/gather_items.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/embl_gather.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/item_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/items/item.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/gather_items.cpp:970:13: warning: unused function 's_NsAreGaps' [-Wunused-function] static bool s_NsAreGaps(const CBioseq_Handle& seq, CBioseqContext& ctx) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/genbank_gather.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/flat_file_generator.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 1 warning generated. t/context.cpp -o context.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/gather_items.cpp -o gather_items.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/embl_gather.cpp -o embl_gather.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/genbank_gather.cpp -o genbank_gather.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/flat_file_generator.cpp -o flat_file_generator.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/item_formatter.cpp -o item_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/item_formatter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/biblio/Cit_book.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/biblio/Cit_book_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/embl_formatter.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/text_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/genbank_formatter.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/format_item_ostream.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/format_item_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/item_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/items/item.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/item_ostream.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/text_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/embl_formatter.cpp -o embl_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/genbank_formatter.cpp -o genbank_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/format_item_ostream.cpp -o format_item_ostream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/item_ostream.cpp -o item_ostream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/ostream_text_ostream.cpp -o ostream_text_ostream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/incIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/ostream_text_ostream.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/ostream_text_ostream.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/text_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/genbank_formatter.cpp:281:15: warning: unused function 's_get_anchor_html' [-Wunused-function] static string s_get_anchor_html(const string & sAnchorName, TGi iGi ) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/origin_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/ftable_gather.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/item_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/items/item.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/ftable_formatter.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/gbseq_formatter.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/flat_file_config.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/items/accession_item.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/items/item_base.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/origin_item.cpp -o origin_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/ftable_gather.cpp -o ftable_gather.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/ftable_formatter.cpp -o ftable_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/gbseq_formatter.cpp -o gbseq_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/flat_file_config.cpp -o flat_file_config.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/alignment_item.cpp -o alignment_it1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/alignment_item.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/text_ostream.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/gap_item.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/items/gap_item.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/items/item_base.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/genome_project_item.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/sam_formatter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/cigar_formatter.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/cigar_formatter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. em.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/gap_item.cpp -o gap_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/genome_project_item.cpp -o genome_project_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/sam_formatter.cpp -o sam_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/cigar_formatter.cpp -o cigar_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/gather_iter.cpp -o gather_iter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/gather_iter.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/gather_iter.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_entry_ci.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_set_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Bioseq_set.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Bioseq_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/html_anchor_item.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/items/html_anchor_item.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/items/item_base.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/gene_finder.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/items/gene_finder.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/flat_qual_slots.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/items/flat_qual_slots.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/OrgMod.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqfeat/OrgMod_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. _FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/html_anchor_item.cpp -o html_anchor_item.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/inst_info_map.cpp -o inst_info_map.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/gene_finder.cpp -o gene_finder.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/format/flat_qual_slots.cpp -o flat_qual_slots.o /bin/rm -f libxformat.a .libxformat.a.stamp ar cr libxformat.a accession_item.o basecount_item.o comment_item.o contig_item.o date_item.o dbsource_item.o defline_item.o feature_item.o genome_item.o ctrl_items.o keywords_item.o locus_item.o primary_item.o reference_item.o segment_item.o sequence_item.o source_item.o version_item.o wgs_item.o tsa_item.o flat_seqloc.o qualifiers.o context.o gather_items.o embl_gather.o genbank_gather.o flat_file_generator.o item_formatter.o embl_formatter.o genbank_formatter.o format_item_ostream.o item_ostream.o ostream_text_ostream.o origin_item.o ftable_gather.o ftable_formatter.o gbseq_formatter.o flat_file_config.o alignment_item.o gap_item.o genome_project_item.o sam_formatter.o cigar_formatter.o gather_iter.o html_anchor_item.o inst_info_map.o gene_finder.o flat_qual_slots.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxformat.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxformat.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxformat.a /bin/ln -f .xformat.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xformat.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/format' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/format' /opt/pkg/bin/gmake -C validator -j3 --jobserver-auth=fifo:/var/tmp//GMfifo35960 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/validator' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/validator' /opt/pkg/bin/gmake -C asniotest -j3 --jobserver-auth=fifo:/var/tmp//GMfifo35960 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/asniotest' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/asniotest' /opt/pkg/bin/gmake -C align -j3 --jobserver-auth=fifo:/var/tmp//GMfifo35960 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align' /opt/pkg/bin/gmake -C seqmasks_io -j3 --jobserver-auth=fifo:/var/tmp//GMfifo35960 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test/Makefile gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -j3 --jobserver-auth=fifo:/var/tmp//GMfifo1136 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -j3 --jobserver-auth=fifo:/var/tmp//GMfifo1136 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -j3 --jobserver-auth=fifo:/var/tmp//GMfifo1136 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp -o mask_fasta_reader.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-commoIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/fasta.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/seqmasks_io/mask_writer_int.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/seqmasks_io/mask_writer.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. n -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp -o mask_writer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp -o mask_writer_fasta.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp -o mask_writer_int.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp -o mask_writer_tab.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-srcIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/seqmasks_io/mask_writer_tab.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/seqmasks_io/mask_writer.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/seqmasks_io/mask_writer_seqloc.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/seqmasks_io/mask_writer.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/seqmasks_io/mask_writer.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. /c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o /bin/rm -f libseqmasks_io.a .libseqmasks_io.a.stamp ar cr libseqmasks_io.a mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqmasks_io.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libseqmasks_io.a /bin/ln -f .seqmasks_io.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.seqmasks_io.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo1136 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /opt/pkg/bin/gmake -C align_format -j3 --jobserver-auth=fifo:/var/tmp//GMfifo35960 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format TMPL=align_format -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4141 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format TMPL=align_format -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4141 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format TMPL=align_format -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4141 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/align_format_util.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/align_format/align_format_util.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/align_format_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/format_flags.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/showdefline.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/showalign.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/tabular.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/vectorscreen.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/taxFormat.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/aln_printer.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/format_flags.cpp -o format_flags.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/align_format_util.cpp -o align_format_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/showdefline.cpp -o showdefline.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecatIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/showdefline.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/showalign.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/align_format/align_format_util.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/align_format_util.cpp:1574:9: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/showdefline.cpp:1239:16: warning: variable 'line_length' set but not used [-Wunused-but-set-variable] size_t line_length = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/showalign.cpp:4138:28: warning: unused variable 'subject_seqid' [-Wunused-variable] const CSeq_id& subject_seqid = m_AV->GetSeqId(1); ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/tabular.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/vectorscreen.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/align_format/vectorscreen.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/vectorscreen.cpp:448:35: warning: unused variable 'da' [-Wunused-variable] const CSeq_align& da = *x_OrigAlignsById[*di]; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. 1 warning generated. ed-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/showalign.cpp -o showalign.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/tabular.cpp -o tabular.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/vectorscreen.cpp -o vectorscreen.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp -o seqalignfilter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/taxFormat.cpp -o taxFormat.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/pyIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/taxFormat.cpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/taxon1.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/taxon1__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/aln_printer.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. thon3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/objtools/align_format/aln_printer.cpp -o aln_printer.o /bin/rm -f libalign_format.a .libalign_format.a.stamp ar cr libalign_format.a format_flags.o align_format_util.o showdefline.o showalign.o tabular.o vectorscreen.o seqalignfilter.o taxFormat.o aln_printer.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libalign_format.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libalign_format.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libalign_format.a /bin/ln -f .align_format.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.align_format.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo4141 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Nothing to be done for 'mark-as-disabled_r'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/align_format' /opt/pkg/bin/gmake -C snputil -j3 --jobserver-auth=fifo:/var/tmp//GMfifo35960 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/snputil' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/snputil' /opt/pkg/bin/gmake -C uudutil -j3 --jobserver-auth=fifo:/var/tmp//GMfifo35960 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/uudutil' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/uudutil' /opt/pkg/bin/gmake -C variation -j3 --jobserver-auth=fifo:/var/tmp//GMfifo35960 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/variation' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/variation' /opt/pkg/bin/gmake -C writers -j3 --jobserver-auth=fifo:/var/tmp//GMfifo35960 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/writers' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/writers' /opt/pkg/bin/gmake -C import -j3 --jobserver-auth=fifo:/var/tmp//GMfifo35960 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/import' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/import' /opt/pkg/bin/gmake -C flatfile -j3 --jobserver-auth=fifo:/var/tmp//GMfifo35960 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/flatfile' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools/flatfile' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/objtools' /opt/pkg/bin/gmake -C ctools -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56877 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/ctools' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/ctools' /opt/pkg/bin/gmake -C sra -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56877 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project sra due to unmet requirements: VDB gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -C readers -j3 --jobserver-auth=fifo:/var/tmp//GMfifo8877 mark-as-disabled_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -C sra -j3 --jobserver-auth=fifo:/var/tmp//GMfifo8881 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/sra' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/sra/readers/sra TMPL=sraread -j3 --jobserver-auth=fifo:/var/tmp//GMfifo8891 mark-as-disabled gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/sra' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/sra/readers/sra TMPL=srareadx -j3 --jobserver-auth=fifo:/var/tmp//GMfifo8891 mark-as-disabled gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/sra' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/sra' /opt/pkg/bin/gmake -C bam -j3 --jobserver-auth=fifo:/var/tmp//GMfifo8881 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/bam' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/bam' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/bam' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/bam' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/bam' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/sra/readers/bam TMPL=bamread -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9223 mark-as-disabled gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/bam' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/bam' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers/bam' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/readers' /opt/pkg/bin/gmake -C data_loaders -j3 --jobserver-auth=fifo:/var/tmp//GMfifo8877 mark-as-disabled_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -C sra -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9361 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/sra' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/sra' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/sra' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/sra' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/sra' NOTE: skipping project "ncbi_xloader_sra" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/sra' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/sra' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9367 mark-as-disabled_r || exit 5 gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/sra/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/sra/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/sra' /opt/pkg/bin/gmake -C bam -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9361 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/bam' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/bam' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/bam' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/bam' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/bam' NOTE: skipping project "ncbi_xloader_bam" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/bam' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/bam' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9401 mark-as-disabled_r || exit 5 gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/bam/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/bam/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/bam' /opt/pkg/bin/gmake -C csra -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9361 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/csra' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/csra' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/csra' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/csra' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/csra' NOTE: skipping project "ncbi_xloader_csra" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/csra' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/csra' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9430 mark-as-disabled_r || exit 5 gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/csra/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/csra/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/csra' /opt/pkg/bin/gmake -C wgs -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9361 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' NOTE: skipping project "ncbi_xloader_wgs" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' /opt/pkg/bin/gmake -C vdbgraph -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9361 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' NOTE: skipping project "ncbi_xloader_vdbgraph" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9473 mark-as-disabled_r || exit 5 gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' /opt/pkg/bin/gmake -C snp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9361 mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/snp' NOTE: skipping project "ncbi_xloader_snp" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/snp' /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9494 mark-as-disabled_r || exit 5 gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/snp/test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/snp/test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra/data_loaders' /bin/echo 'Warning: non-existent sub-project "app"' Warning: non-existent sub-project "app" gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sra' /opt/pkg/bin/gmake -C algo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56877 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/sequence/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/align/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/structure/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/sequence/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/sequence/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/structure/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/structure/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/align/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/align/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/gnomon/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/tree/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/phy_tree/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/gnomon/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/gnomon/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/phy_tree/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/phy_tree/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/tree/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/tree/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/seqqa/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/cobalt/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/text/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/seqqa/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/seqqa/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/text/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/text/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/cobalt/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/cobalt/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/volume_merge/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/primer/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/id_mapper/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/primer/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/primer/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/volume_merge/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/volume_merge/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/id_mapper/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/id_mapper/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT sequence/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT align/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT structure/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/align/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/sequence/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/structure/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT gnomon/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT tree/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT phy_tree/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/phy_tree/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/gnomon/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/tree/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT seqqa/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT cobalt/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT text/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/seqqa/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/text/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/cobalt/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT volume_merge/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT primer/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT id_mapper/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/volume_merge/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/id_mapper/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/primer/Makefile /opt/pkg/bin/gmake -C dustmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9526 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/dustmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/dustmask TMPL=xalgodustmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo12691 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/dustmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/dustmask TMPL=xalgodustmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo12691 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/dustmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/dustmask TMPL=xalgodustmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo12691 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/dustmask/symdust.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/dustmask/symdust.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/dustmask' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/dustmask/symdust.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/dustmask/symdust.cpp -o symdust.o /bin/rm -f libxalgodustmask.a .libxalgodustmask.a.stamp ar cr libxalgodustmask.a symdust.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgodustmask.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxalgodustmask.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxalgodustmask.a /bin/ln -f .xalgodustmask.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xalgodustmask.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/dustmask' /opt/pkg/bin/gmake -C winmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9526 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/winmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask TMPL=xalgowinmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo14198 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/winmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask TMPL=xalgowinmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo14198 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/winmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask TMPL=xalgowinmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo14198 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/winmask' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_score_min.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_window.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_ostat.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp. Updating dependency inIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_score_mean_glob.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_score.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. formation for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/win_mask_util.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/win_mask_config.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m61 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_score_min.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_window.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window_ambig.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. 4 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window_pattern_ambig.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window_pattern_ambig.hpp:113:10: warning: private field 'ambig' is not used [-Wunused-private-field] bool ambig; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ bulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/wIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat_bin.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ inmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp -o seq_masker_istat_bin.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp -o seq_masker_ostat_opt.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp -o seq_masker_ostat_opt_ascii.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat_oascii.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat_obinary.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp -o seq_masker_uset_hash.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp -o seq_masker_istat_oascii.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp -o seq_masker_ostat_opt_bin.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp -o seq_masker_istat_obinary.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp -o seq_masker_cache_boost.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_cache_boost.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/win_mask_counts_converter.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/win_mask_util.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/sequence.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/win_mask_util.cpp:130:31: warning: 'GetTitle' is deprecated [-Wdeprecated-declarations] string id_str = sequence::GetTitle( bsh ); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/sequence.hpp:289:1: note: 'GetTitle' has been explicitly marked deprecated here NCBI_DEPRECATED NCBI_XOBJUTIL_EXPORT ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/win_mask_config.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/win_mask_config.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp -o win_mask_counts_converter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp -o win_mask_dup_table.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp -o win_mask_gen_counts.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/win_mask_util.cpp -o win_mask_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/win_mask_config.cpp -o win_mask_config.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSI2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. ON_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/winmask/seq_masker_istat.cpp -o seq_masker_istat.o /bin/rm -f libxalgowinmask.a .libxalgowinmask.a.stamp ar cr libxalgowinmask.a seq_masker.o seq_masker_score_mean.o seq_masker_score_mean_glob.o seq_masker_score_min.o seq_masker_util.o seq_masker_window.o seq_masker_window_ambig.o seq_masker_window_pattern.o seq_masker_window_pattern_ambig.o seq_masker_ostat_factory.o seq_masker_ostat.o seq_masker_ostat_ascii.o seq_masker_istat_ascii.o seq_masker_uset_simple.o seq_masker_istat_factory.o seq_masker_ostat_bin.o seq_masker_uset_array.o seq_masker_istat_bin.o seq_masker_ostat_opt.o seq_masker_ostat_opt_ascii.o seq_masker_uset_hash.o seq_masker_istat_oascii.o seq_masker_ostat_opt_bin.o seq_masker_istat_obinary.o seq_masker_cache_boost.o win_mask_counts_converter.o win_mask_dup_table.o win_mask_gen_counts.o win_mask_util.o win_mask_config.o seq_masker_istat.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgowinmask.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxalgowinmask.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxalgowinmask.a /bin/ln -f .xalgowinmask.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xalgowinmask.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/winmask' /opt/pkg/bin/gmake -C sequence -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9526 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/sequence' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/sequence' /opt/pkg/bin/gmake -C blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9526 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex_search/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blast_sra_input/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/gumbel_params/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex_search/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex_search/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/gumbel_params/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/gumbel_params/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blast_sra_input/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blast_sra_input/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT dbindex_search/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT blast_sra_input/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT gumbel_params/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/gumbel_params/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex_search/Makefile /opt/pkg/bin/gmake -C composition_adjustment -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24617 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -j3 --jobserver-auth=fifo:/var/tmp//GMfifo25528 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -j3 --jobserver-auth=fifo:/var/tmp//GMfifo25528 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -j3 --jobserver-auth=fifo:/var/tmp//GMfifo25528 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c:178:12: warning: variable 'corr_factor' set but not used [-Wunused-but-set-variable] double corr_factor = 0.0; /* correlation between how p_query ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c:137:1: warning: function 's_CompoHeapIsValid' is not needed and will not be emitted [-Wunneeded-internal-declaration] s_CompoHeapIsValid(BlastCompo_HeapRecord * heapArray, int i, int n) ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/composition_adjustment.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/smith_waterman.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/unified_pvalues.c. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c -o compo_heap.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c -o compo_mode_condition.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/composition_adjustment.c -o composition_adjustment.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c:185:1: warning: unused function 's_AlignmentsAreSorted' [-Wunused-function] s_AlignmentsAreSorted(BlastCompo_Alignment * alignments) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c:200:1: warning: unused function 's_DistinctAlignmentsLength' [-Wunused-function] s_DistinctAlignmentsLength(BlastCompo_Alignment * list) ^ c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c -o matrix_frequency_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c -o nlm_linear_algebra.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFI2 warnings generated. LE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o /bin/rm -f libcomposition_adjustment.a .libcomposition_adjustment.a.stamp ar cr libcomposition_adjustment.a compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libcomposition_adjustment.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libcomposition_adjustment.a /bin/ln -f .composition_adjustment.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.composition_adjustment.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /opt/pkg/bin/gmake -C core -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24617 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/core' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core TMPL=blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo26913 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/core' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core TMPL=blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo26913 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/core' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core TMPL=blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo26913 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/core' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/aa_ungapped.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_diagnostics.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_engine.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_extend.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_filter.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_gapalign.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_hits.c. 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Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/pattern.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/phi_extend.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/phi_gapalign.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/phi_lookup.c. Updating Updating dependency dependency information information for for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_posit.c. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_parameters.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_program.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_query_info.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_tune.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_sw.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/split_query.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/gencode_singleton.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_dynarray.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_traceback_mt_priv.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/index_ungapped.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_hspstream_mt_utils.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/boost_erf.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/jumper.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/hspfilter_mapper.c. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/spliced_hits.c. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/aa_ungapped.c -o aa_ungapped.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_diagnostics.c -o blast_diagnostics.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_engine.c -o blast_engine.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_extend.c -o blast_extend.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_filter.c -o blast_filter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_gapalign.c -o blast_gapalign.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_hits.c -o blast_hits.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_hspstream.c -o blast_hspstream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_itree.c -o blast_itree.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_kappa.c -o blast_kappa.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_kappa.c:3004:27: warning: unused variable 'forbidden' [-Wunused-variable] Blast_ForbiddenRanges forbidden = {0,}; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_kappa.c:3431:11: warning: unused variable 'my_stderr' [-Wunused-variable] FILE *my_stderr = stderr; ^ 2 warnings generated. -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_lookup.c -o blast_lookup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_aalookup.c -o blast_aalookup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_aascan.c -o blast_aascan.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_nalookup.c -o blast_nalookup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_nascan.c -o blast_nascan.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/bui/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_psi_priv.c:1095:25: warning: variable 'rv' set but not used [-Wunused-but-set-variable] int rv = _PSIPurgeAlignedRegion(msa, seq_index, ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_psi_priv.c:1727:20: warning: variable 'sum' set but not used [-Wunused-but-set-variable] double sum = 0.0; ^ ld/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_message.c -o blast_message.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_options.c -o blast_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_psi.c -o blast_psi.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/na_ungapped.c -o na_ungapped.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_psi_priv.c -o blast_psi_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_seg.c -o blast_seg.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-depr2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_stat.c:1169:12: warning: variable 'check' set but not used [-Wunused-but-set-variable] double check; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_stat.c:1362:10: warning: variable 'lineno' set but not used [-Wunused-but-set-variable] long lineno = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_traceback.c:1730:14: warning: variable 'totalCnt' set but not used [-Wunused-but-set-variable] Int4 totalCnt = 0; ^ 1 warning generated. ecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_seqsrc.c -o blast_seqsrc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 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-D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_util.c -o blast_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-2 warnings generated. blast+/work/ncbi-blast-2.14.0+-src/c++/include 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-fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/hspfilter_collector.c -o hspfilter_collector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/hspfilter_besthit.c -o hspfilter_besthit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/link_hsps.c -o link_hsps.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/lookup_util.c -o lookup_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings 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-D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/matrix_freq_ratios.c -o matrix_freq_ratios.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include 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-fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_encoding.c -o blast_encoding.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include 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-DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/phi_extend.c -o phi_extend.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/phi_gapalign.c -o phi_gapalign.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/phi_lookup.c -o phi_lookup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include 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-I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_posit.c -o blast_posit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_program.c -o blast_program.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_query_info.c -o blast_query_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register 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-I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_sw.c -o blast_sw.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 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-D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/index_ungapped.c -o index_ungapped.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_traceback_mt_priv.c -o blast_traceback_mt_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-b/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/jumper.c:4154:10: warning: variable 'num_extensions' set but not used [-Wunused-but-set-variable] Int4 num_extensions = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/hspfilter_mapper.c:2640:22: warning: variable 'trim_by' set but not used [-Wunused-but-set-variable] Int4 trim_by; ^ 1 warning generated. 1 warning generated. last+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/blast_hspstream_mt_utils.c -o blast_hspstream_mt_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc 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/Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/hspfilter_mapper.c -o hspfilter_mapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/core/spliced_hits.c -o spliced_hits.o /bin/rm -f libblast.a .libblast.a.stamp ar cr libblast.a aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_hspstream.o blast_itree.o blast_kappa.o blast_lookup.o blast_aalookup.o blast_aascan.o blast_nalookup.o blast_nascan.o blast_message.o blast_options.o blast_psi.o na_ungapped.o blast_psi_priv.o blast_seg.o blast_seqsrc.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspfilter_collector.o hspfilter_besthit.o hspfilter_culling.o link_hsps.o lookup_util.o lookup_wrap.o matrix_freq_ratios.o ncbi_std.o ncbi_math.o blast_encoding.o pattern.o phi_extend.o phi_gapalign.o phi_lookup.o blast_parameters.o blast_posit.o blast_program.o blast_query_info.o blast_tune.o blast_sw.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o blast_traceback_mt_priv.o blast_hspstream_mt_utils.o boost_erf.o jumper.o hspfilter_mapper.o spliced_hits.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libblast.a /bin/ln -f .blast.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.blast.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/core' /opt/pkg/bin/gmake -C dbindex -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24617 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -j3 --jobserver-auth=fifo:/var/tmp//GMfifo31461 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -j3 --jobserver-auth=fifo:/var/tmp//GMfifo31461 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -j3 --jobserver-auth=fifo:/var/tmp//GMfifo31461 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/dbindex/sequence_istream_bdb.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/fasta.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:52:32: warning: 'fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] objects::CFastaReader::fAllSeqIds; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/fasta.hpp:92:20: note: 'fAllSeqIds' has been explicitly marked deprecated here fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:183:40: note: expanded from macro 'NCBI_STD_DEPRECATED' # define NCBI_STD_DEPRECATED(message) NCBI_STD_DEPRECATED_1(message) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:177:44: note: expanded from macro 'NCBI_STD_DEPRECATED_1' # define NCBI_STD_DEPRECATED_1(message) [[deprecated(message)]] ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp:306:19: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] unsigned long tmp; ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -DDO_INLINE -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -DDO_INLINE -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -DDO_INLINE -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -DDO_INLINE -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/dbindex/dbindex.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/dbindex/sequence_istream.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp:783:23: warning: private field 'word_size_' is not used [-Wunused-private-field] unsigned long word_size_; /**< Target word size. */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:39: warning: 'GetTitle' is deprecated [-Wdeprecated-declarations] string idstr = objects::sequence::GetTitle( bsh ); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/sequence.hpp:289:1: note: 'GetTitle' has been explicitly marked deprecated here NCBI_DEPRECATED NCBI_XOBJUTIL_EXPORT ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. 2 warnings generated. -stdlib=libc++ -std=gnu++17 -c -DDO_INLINE -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o /bin/rm -f libxalgoblastdbindex.a .libxalgoblastdbindex.a.stamp ar cr libxalgoblastdbindex.a sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxalgoblastdbindex.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxalgoblastdbindex.a /bin/ln -f .xalgoblastdbindex.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xalgoblastdbindex.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' /opt/pkg/bin/gmake -C makeindex -j3 --jobserver-auth=fifo:/var/tmp//GMfifo31461 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -j3 --jobserver-auth=fifo:/var/tmp//GMfifo33334 flag-stamps gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -j3 --jobserver-auth=fifo:/var/tmp//GMfifo33334 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/fasta.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/fasta.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=makembindex -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=makembindex -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O main.o mkindex_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lxalgoblastdbindex-static -lblast-static -lcomposition_adjustment-static -lseqdb-static -lblastdb-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxobjutil-static -ltables-static -lconnect-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o makembindex strip makembindex /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makembindex /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f makembindex /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/makembindex gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' /opt/pkg/bin/gmake -C dbindex_search -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24617 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex_search' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/dbindex_search' /opt/pkg/bin/gmake -C api -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24617 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api TMPL=xblast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo34895 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api TMPL=xblast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo34895 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api TMPL=xblast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo34895 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/api' echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/aa_ungapped.c"' > .core_aa_ungapped.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_diagnostics.c"' > .core_blast_diagnostics.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_engine.c"' > .core_blast_engine.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_extend.c"' > .core_blast_extend.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_filter.c"' > .core_blast_filter.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_gapalign.c"' > .core_blast_gapalign.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_hits.c"' > .core_blast_hits.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_hspstream.c"' > .core_blast_hspstream.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_itree.c"' > .core_blast_itree.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_kappa.c"' > .core_blast_kappa.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_lookup.c"' > .core_blast_lookup.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_aalookup.c"' > .core_blast_aalookup.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_aascan.c"' > .core_blast_aascan.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_nalookup.c"' > .core_blast_nalookup.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_nascan.c"' > .core_blast_nascan.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_message.c"' > .core_blast_message.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_options.c"' > .core_blast_options.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_psi.c"' > .core_blast_psi.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/na_ungapped.c"' > .core_na_ungapped.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c"' > .core_blast_psi_priv.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_seg.c"' > .core_blast_seg.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_seqsrc.c"' > .core_blast_seqsrc.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_setup.c"' > .core_blast_setup.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_stat.c"' > .core_blast_stat.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_traceback.c"' > .core_blast_traceback.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_util.c"' > .core_blast_util.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/gapinfo.c"' > .core_gapinfo.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/greedy_align.c"' > .core_greedy_align.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/hspfilter_collector.c"' > .core_hspfilter_collector.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/hspfilter_besthit.c"' > .core_hspfilter_besthit.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c"' > .core_hspfilter_culling.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/link_hsps.c"' > .core_link_hsps.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/lookup_util.c"' > .core_lookup_util.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/lookup_wrap.c"' > .core_lookup_wrap.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/matrix_freq_ratios.c"' > .core_matrix_freq_ratios.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/ncbi_std.c"' > .core_ncbi_std.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/ncbi_math.c"' > .core_ncbi_math.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_encoding.c"' > .core_blast_encoding.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/pattern.c"' > .core_pattern.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/phi_extend.c"' > .core_phi_extend.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/phi_gapalign.c"' > .core_phi_gapalign.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/phi_lookup.c"' > .core_phi_lookup.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_parameters.c"' > .core_blast_parameters.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_posit.c"' > .core_blast_posit.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_program.c"' > .core_blast_program.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_query_info.c"' > .core_blast_query_info.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_tune.c"' > .core_blast_tune.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_sw.c"' > .core_blast_sw.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_dynarray.c"' > .core_blast_dynarray.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/split_query.c"' > .core_split_query.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/gencode_singleton.c"' > .core_gencode_singleton.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/index_ungapped.c"' > .core_index_ungapped.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_traceback_mt_priv.c"' > .core_blast_traceback_mt_priv.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_hspstream_mt_utils.c"' > .core_blast_hspstream_mt_utils.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/boost_erf.c"' > .core_boost_erf.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/jumper.c"' > .core_jumper.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c"' > .core_hspfilter_mapper.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/spliced_hits.c"' > .core_spliced_hits.c Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_aux.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_options_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_options_builder.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_seqalign.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_nucl_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/disc_nucl_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_prot_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_rps_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blastx_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/tblastx_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/tblastn_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/rpstblastn_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/remote_blast.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/local_blast.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/pssm_engine.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/bl2seq.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_mtlock.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psibl2seq.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/local_db_adapter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast_impl.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast_iteration.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psi_pssm_input.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_advprot_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_aux_priv.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blastp_kmer_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/version.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/rps_aux.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/dust_filter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/search_strategy.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/setup_factory.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/prelim_stage.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/uniform_search.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/traceback_stage.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/local_search.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_results.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/remote_search.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/query_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/objmgr_query_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_dbindex.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/split_query_cxx.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/split_query_blk.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/winmask_filter.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/subj_ranges_set.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/rpsblast_local.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seedtop.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/deltablast_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/magicblast_options.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/deltablast.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/magicblast.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_node.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_usage_report.cpp. Updating dependency information for .core_aa_ungapped.c. Updating dependency information for .core_blast_diagnostics.c. Updating dependency information for .core_blast_engine.c. Updating dependency information for .core_blast_extend.c. Updating dependency information for .core_blast_filter.c. Updating dependency information for .core_blast_gapalign.c. Updating dependency information for .core_blast_hits.c. Updating dependency information for .core_blast_hspstream.c. Updating dependency information for .core_blast_itree.c. Updating dependency information for .core_blast_kappa.c. Updating dependency information for .core_blast_lookup.c. Updating dependency information for .core_blast_aalookup.c. Updating dependency information for .core_blast_aascan.c. Updating dependency information for .core_blast_nalookup.c. Updating dependency information for .core_blast_nascan.c. Updating dependency information for .core_blast_message.c. Updating dependency information for .core_blast_options.c. Updating dependency information for .core_blast_psi.c. Updating dependency information for .core_na_ungapped.c. Updating dependency information for .core_blast_psi_priv.c. Updating dependency information for .core_blast_seg.c. Updating dependency information for .core_blast_seqsrc.c. Updating dependency information for .core_blast_setup.c. Updating dependency information for .core_blast_stat.c. Updating dependency information for .core_blast_traceback.c. Updating dependency information for .core_blast_util.c. Updating dependency information for .core_gapinfo.c. Updating dependency information for .core_greedy_align.c. Updating dependency information for .core_hspfilter_collector.c. Updating dependency information for .core_hspfilter_besthit.c. Updating dependency information for .core_hspfilter_culling.c. Updating dependency information for .core_link_hsps.c. Updating dependency information for .core_lookup_util.c. Updating dependency information for .core_lookup_wrap.c. Updating dependency information for .core_matrix_freq_ratios.c. Updating dependency information for .core_ncbi_math.c. Updating dependency information for .core_ncbi_std.c. Updating dependency information for .core_blast_encoding.c. Updating dependency information for .core_pattern.c. Updating dependency information for .core_phi_extend.c. Updating dependency information for .core_phi_gapalign.c. Updating dependency information for .core_phi_lookup.c. Updating dependency information for .core_blast_parameters.c. Updating dependency information for .core_blast_posit.c. Updating dependency information for .core_blast_program.c. Updating dependency information for .core_blast_query_info.c. Updating dependency information for .core_blast_tune.c. Updating dependency information for .core_blast_sw.c. Updating dependency information for .core_blast_dynarray.c. Updating dependency information for .core_split_query.c. Updating dependency information for .core_gencode_singleton.c. Updating dependency information for .core_index_ungapped.c. Updating dependency information for .core_blast_traceback_mt_priv.c. Updating dependency information for .core_blast_hspstream_mt_utils.c. Updating dependency information for .core_boost_erf.c. Updating dependency information for .core_jumper.c. Updating dependency information for .core_hspfilter_mapper.c. Updating dependency information for .core_spliced_hits.c. rm .core_blast_dynarray.c .core_blast_util.c .core_boost_erf.c .core_blast_posit.c .core_hspfilter_mapper.c .core_blast_itree.c .core_hspfilter_culling.c .core_blast_program.c .core_ncbi_std.c .core_ncbi_math.c .core_blast_traceback.c .core_blast_stat.c .core_blast_seqsrc.c .core_blast_setup.c .core_index_ungapped.c .core_link_hsps.c .core_blast_engine.c .core_pattern.c .core_blast_filter.c .core_greedy_align.c .core_lookup_wrap.c .core_lookup_util.c .core_hspfilter_besthit.c .core_gencode_singleton.c .core_gapinfo.c .core_spliced_hits.c .core_blast_psi.c .core_blast_hits.c .core_blast_kappa.c .core_blast_message.c .core_blast_parameters.c .core_matrix_freq_ratios.c .core_hspfilter_collector.c .core_aa_ungapped.c .core_blast_traceback_mt_priv.c .core_blast_hspstream_mt_utils.c .core_blast_aascan.c .core_blast_lookup.c .core_blast_diagnostics.c .core_phi_lookup.c .core_blast_nascan.c .core_blast_hspstream.c .core_blast_query_info.c .core_blast_gapalign.c .core_na_ungapped.c .core_blast_seg.c .core_phi_extend.c .core_blast_nalookup.c .core_split_query.c .core_blast_sw.c .core_blast_encoding.c .core_blast_tune.c .core_blast_psi_priv.c .core_jumper.c .core_blast_options.c .core_blast_aalookup.c .core_blast_extend.c .core_phi_gapalign.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/aa_ungapped.c"' > .core_aa_ungapped.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_diagnostics.c"' > .core_blast_diagnostics.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_engine.c"' > .core_blast_engine.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_extend.c"' > .core_blast_extend.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_filter.c"' > .core_blast_filter.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_gapalign.c"' > .core_blast_gapalign.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_hits.c"' > .core_blast_hits.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_hspstream.c"' > .core_blast_hspstream.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_itree.c"' > .core_blast_itree.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_kappa.c"' > .core_blast_kappa.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_lookup.c"' > .core_blast_lookup.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_aalookup.c"' > .core_blast_aalookup.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_aascan.c"' > .core_blast_aascan.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_nalookup.c"' > .core_blast_nalookup.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_nascan.c"' > .core_blast_nascan.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_message.c"' > .core_blast_message.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_options.c"' > .core_blast_options.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_psi.c"' > .core_blast_psi.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/na_ungapped.c"' > .core_na_ungapped.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c"' > .core_blast_psi_priv.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_seg.c"' > .core_blast_seg.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_seqsrc.c"' > .core_blast_seqsrc.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_setup.c"' > .core_blast_setup.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_stat.c"' > .core_blast_stat.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_traceback.c"' > .core_blast_traceback.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_util.c"' > .core_blast_util.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/gapinfo.c"' > .core_gapinfo.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/greedy_align.c"' > .core_greedy_align.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/hspfilter_collector.c"' > .core_hspfilter_collector.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/hspfilter_besthit.c"' > .core_hspfilter_besthit.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c"' > .core_hspfilter_culling.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/link_hsps.c"' > .core_link_hsps.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/lookup_util.c"' > .core_lookup_util.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/lookup_wrap.c"' > .core_lookup_wrap.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/matrix_freq_ratios.c"' > .core_matrix_freq_ratios.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/ncbi_std.c"' > .core_ncbi_std.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/ncbi_math.c"' > .core_ncbi_math.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_encoding.c"' > .core_blast_encoding.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/pattern.c"' > .core_pattern.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/phi_extend.c"' > .core_phi_extend.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/phi_gapalign.c"' > .core_phi_gapalign.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/phi_lookup.c"' > .core_phi_lookup.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_parameters.c"' > .core_blast_parameters.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_posit.c"' > .core_blast_posit.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_program.c"' > .core_blast_program.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_query_info.c"' > .core_blast_query_info.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_tune.c"' > .core_blast_tune.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_sw.c"' > .core_blast_sw.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_dynarray.c"' > .core_blast_dynarray.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/split_query.c"' > .core_split_query.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/gencode_singleton.c"' > .core_gencode_singleton.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/index_ungapped.c"' > .core_index_ungapped.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-sIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_aux.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_options_cxx.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_options_local_priv.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. rc/c++/src/algo/blast/api/../core/blast_traceback_mt_priv.c"' > .core_blast_traceback_mt_priv.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_hspstream_mt_utils.c"' > .core_blast_hspstream_mt_utils.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/boost_erf.c"' > .core_boost_erf.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/jumper.c"' > .core_jumper.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c"' > .core_hspfilter_mapper.c echo '#include "/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/spliced_hits.c"' > .core_spliced_hits.c /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_aux.cpp -o blast_aux.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_options_cxx.cpp -o blast_options_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp -o blast_options_local_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_options_builder.cpp -o blast_options_builder.o /Users/pbulk/build/biology/ncbi-blast+/work/.c1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_options_builder.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/remote_blast.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_seqalign.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_seqalign.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_seqalign.cpp:530:17: warning: variable 'subject_pos' set but not used [-Wunused-but-set-variable] int subject_pos = hh->hsp->subject.offset; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_seqalign.cpp:462:9: warning: variable 'num_hsps' set but not used [-Wunused-but-set-variable] int num_hsps = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_nucl_options.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp:100:20: warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations] return m_Opts->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:178:5: note: 'GetFilterString' has been explicitly marked deprecated here NCBI_DEPRECATED char* GetFilterString() const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp:106:13: warning: 'SetFilterString' is deprecated [-Wdeprecated-declarations] m_Opts->SetFilterString(f, clear); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:180:5: note: 'SetFilterString' has been explicitly marked deprecated here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 3 warnings generated. 3 warnings generated. wrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp -o blast_setup_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_seqalign.cpp -o blast_seqalign.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp -o blast_options_handle.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_nucl_options.cpp -o blast_nucl_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/disc_nucl_options.cpp -o disc_nucl_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/incluIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/disc_nucl_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/disc_nucl_options.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_prot_options.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/psiblast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_rps_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_rps_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blastx_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blastx_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/tblastx_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/tblastx_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. de/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_prot_options.cpp -o blast_prot_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast_options.cpp -o psiblast_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_rps_options.cpp -o blast_rps_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blastx_options.cpp -o blastx_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/tblastx_options.cpp -o tblastx_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/tblastn_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/tblastn_options.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/rpstblastn_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/rpstblastn_options.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_rps_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/phiblast_nucl_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/phiblast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/tblastn_options.cpp -o tblastn_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/rpstblastn_options.cpp -o rpstblastn_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp -o phiblast_nucl_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp -o phiblast_prot_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/pssm_engine.cpp -o pssm_engine.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blaIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/pssm_engine.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/local_blast.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/remote_blast.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/sequence.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/remote_blast.cpp:1933:10: warning: variable 'rv' set but not used [-Wunused-but-set-variable] Int2 rv = BlastProgram2Number(program.c_str(), &retval); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/remote_blast.cpp:2505:10: warning: variable 'l_total_bytes' set but not used [-Wunused-but-set-variable] int l_total_bytes=0, n_read; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. st-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/local_blast.cpp -o local_blast.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/remote_blast.cpp -o remote_blast.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp -o seqinfosrc_seqvec.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp -o seqinfosrc_seqdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp -o seqinfosrc_bioseq.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0EIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 3 warnings generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqsrc_query_factory.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/bl2seq.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/bl2seq.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp -o seqsrc_multiseq.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp -o seqsrc_seqdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp -o seqsrc_query_factory.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/bl2seq.cpp -o bl2seq.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp -o blast_objmgr_tools.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp -o repeats_filter_cxx.o /Users/pbulk/build/bIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psibl2seq.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/psibl2seq.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/local_db_adapter.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_db_adapter.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/psiblast.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. iology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_mtlock.cpp -o blast_mtlock.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psibl2seq.cpp -o psibl2seq.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/local_db_adapter.cpp -o local_db_adapter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast.cpp -o psiblast.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast_impl.cpp -o psiblast_impl.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecaIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast_impl.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast_impl.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast_iteration.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psi_pssm_input.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/psi_pssm_input.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/msa_pssm_input.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:125:16: warning: 'Read' is deprecated [-Wdeprecated-declarations] reader.Read(false, true); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/aln_reader.hpp:214:5: note: 'Read' has been explicitly marked deprecated here NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_aux_priv.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_aux_priv.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. ted-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast_iteration.cpp -o psiblast_iteration.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psi_pssm_input.cpp -o psi_pssm_input.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp -o msa_pssm_input.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp -o psiblast_aux_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_aux_priv.cpp -o blast_aux_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_advprot_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blastp_kmer_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blastp_kmer_options.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_advprot_options.cpp -o blast_advprot_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blastp_kmer_options.cpp -o blastp_kmer_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/version.cpp -o version.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/dust_filter.cpp -o dust_filter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/rps_aux.cpp -o rps_aux.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/dust_filter.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/dust_filter.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/rps_aux.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/search_strategy.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/setup_factory.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/prelim_stage.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/traceback_stage.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/traceback_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/search_strategy.cpp -o search_strategy.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/setup_factory.cpp -o setup_factory.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/prelim_stage.cpp -o prelim_stage.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/traceback_stage.cpp -o traceback_stage.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/uniform_search.cpp -o uniform_search.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/uniform_search.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/local_search.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/Pssm.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/Pssm_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_results.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_results.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/remote_search.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/seqalign__.hpp:1: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_diag.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Dense_diag_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/query_data.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/objmgr_query_data.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/objmgr_query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. src/algo/blast/api/local_search.cpp -o local_search.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_results.cpp -o blast_results.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/remote_search.cpp -o remote_search.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/query_data.cpp -o query_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/objmgr_query_data.cpp -o objmgr_query_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp -o objmgrfree_query_data.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -WnIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:144:17: warning: variable 'nconv' set but not used [-Wunused-but-set-variable] TSeqPos nconv = CSeqConvert::Convert(m_SequenceData, m_Encoding, ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:203:13: warning: variable 'nconv' set but not used [-Wunused-but-set-variable] TSeqPos nconv = CSeqManip::ReverseComplement(m_SequenceData, ^ 1 warning generated. 3 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/effsearchspace_calc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_seqinfosrc_aux.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_dbindex.cpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. o-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp -o bioseq_extract_data_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp -o effsearchspace_calc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp -o blast_seqinfosrc_aux.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_dbindex.cpp -o blast_dbindex.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/split_query_cxx.cpp -o split_query_cxx.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-commIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/split_query_cxx.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/split_query.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/effsearchspace_calc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/split_query_blk.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/split_query_aux_priv.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/split_query.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/winmask_filter.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/winmask_filter.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/subj_ranges_set.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/subj_ranges_set.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/seqsrc_seqdb.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/rpsblast_local.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. on -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp -o split_query_aux_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/split_query_blk.cpp -o split_query_blk.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/winmask_filter.cpp -o winmask_filter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/subj_ranges_set.cpp -o subj_ranges_set.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/rpsblast_local.cpp -o rpsblast_local.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_T1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seedtop.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/seedtop.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/deltablast_options.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/deltablast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/psiblast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/cdd_pssm_input.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp:821:9: warning: variable 'db_seq_length' set but not used [-Wunused-but-set-variable] int db_seq_length = db_seq_offsets[db_oid + 1] - db_seq_offsets[db_oid]; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/deltablast.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/psiblast.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. HREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/seedtop.cpp -o seedtop.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp -o cdd_pssm_input.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/deltablast_options.cpp -o deltablast_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/deltablast.cpp -o deltablast.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/magicblast_options.cpp -o magicblast_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/magicblast_options.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/magicblast_options.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/magicblast.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_usage_report.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_node.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/remote_blast.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 4 warnings generated. 2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/magicblast.cpp -o magicblast.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_node.cpp -o blast_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_usage_report.cpp -o blast_usage_report.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_aa_ungapped.c -o .core_aa_ungapped.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_blast_diagnostics.c -o .core_blast_diagnostics.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_blast_engine.c -o .core_blast_engine.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecateIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/blast_node.cpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_node.hpp:121:6: warning: private field 'm_QueryIndex' is not used [-Wunused-private-field] int m_QueryIndex; ^ d-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_blast_extend.c -o .core_blast_extend.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_blast_filter.c -o .core_blast_filter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_blast_gapalign.c -o .core_blast_gapalign.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_blast_hits.c -o .core_blast_hits.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_blast_hspstream.c -o .core_blast_hspstream.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_blast_itree.c -o .core_blast_itree.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-formaIn file included from .core_blast_kappa.c:1: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_kappa.c:3004:27: warning: unused variable 'forbidden' [-Wunused-variable] Blast_ForbiddenRanges forbidden = {0,}; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_kappa.c:3431:11: warning: unused variable 'my_stderr' [-Wunused-variable] FILE *my_stderr = stderr; ^ 2 warnings generated. 2 warnings generated. t-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_blast_kappa.c -o .core_blast_kappa.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_blast_lookup.c -o .core_blast_lookup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_blast_aalookup.c -o .core_blast_aalookup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_blast_aascan.c -o .core_blast_aascan.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_blast_nalookup.c -o .core_blast_nalookup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_blast_nascan.c -o .core_blast_nascan.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_blast_message.c -o .core_blast_message.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_blast_options.c -o .core_blast_options.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_blast_psi.c -o .core_blast_psi.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_na_ungapped.c -o .core_na_ungapped.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_blast_psi_priv.c -o .core_blast_psi_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESIn file included from .core_blast_psi_priv.c:1: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c:1095:25: warning: variable 'rv' set but not used [-Wunused-but-set-variable] int rv = _PSIPurgeAlignedRegion(msa, seq_index, ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c:1727:20: warning: variable 'sum' set but not used [-Wunused-but-set-variable] double sum = 0.0; ^ 2 warnings generated. In file included from .core_blast_stat.c:1: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_stat.c:1169:12: warning: variable 'check' set but not used [-Wunused-but-set-variable] double check; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_stat.c:1362:10: warning: variable 'lineno' set but not used [-Wunused-but-set-variable] long lineno = 0; ^ In file included from .core_blast_traceback.c:1: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/blast_traceback.c:1730:14: warning: variable 'totalCnt' set but not used [-Wunused-but-set-variable] Int4 totalCnt = 0; ^ 1 warning generated. SION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_blast_seg.c -o .core_blast_seg.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_blast_seqsrc.c -o .core_blast_seqsrc.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_blast_setup.c -o .core_blast_setup.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_blast_stat.c -o .core_blast_stat.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_blast_traceback.c -o .core_blast_traceback.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_blast_util.c -o .core_blast_util.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/p2 warnings generated. bulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_gapinfo.c -o .core_gapinfo.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_greedy_align.c -o .core_greedy_align.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_hspfilter_collector.c -o .core_hspfilter_collector.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_hspfilter_besthit.c -o .core_hspfilter_besthit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_hspfilter_culling.c -o .core_hspfilter_culling.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_link_hsps.c -o .core_link_hsps.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 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-I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_lookup_wrap.c -o .core_lookup_wrap.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_matrix_freq_ratios.c -o .core_matrix_freq_ratios.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k 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-I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_ncbi_math.c -o .core_ncbi_math.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_blast_encoding.c -o .core_blast_encoding.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_pattern.c -o .core_pattern.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_phi_extend.c -o .core_phi_extend.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include 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-Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_blast_parameters.c -o .core_blast_parameters.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_blast_posit.c -o .core_blast_posit.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_blast_program.c -o .core_blast_program.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_blast_query_info.c -o .core_blast_query_info.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_blast_tune.c -o .core_blast_tune.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include 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-I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_gencode_singleton.c -o .core_gencode_singleton.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_index_ungapped.c -o .core_index_ungapped.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_blast_traceback_mt_priv.c -o .core_blast_traceback_mt_priv.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_blast_hspstream_mt_utils.c -o .core_blast_hspstream_mt_utils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_boost_erf.c -o .core_boost_erf.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_jumper.c -o In file included from .core_hspfilter_mapper.c:1: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c:2640:22: warning: variable 'trim_by' set but not used [-Wunused-but-set-variable] Int4 trim_by; ^ In file included from .core_jumper.c:1: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/api/../core/jumper.c:4154:10: warning: variable 'num_extensions' set but not used [-Wunused-but-set-variable] Int4 num_extensions = 0; ^ 1 warning generated. 1 warning generated. .core_jumper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_hspfilter_mapper.c -o .core_hspfilter_mapper.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 .core_spliced_hits.c -o .core_spliced_hits.o /bin/rm -f libxblast.a .libxblast.a.stamp ar cr libxblast.a .core_aa_ungapped.o .core_blast_diagnostics.o .core_blast_engine.o .core_blast_extend.o .core_blast_filter.o .core_blast_gapalign.o .core_blast_hits.o .core_blast_hspstream.o .core_blast_itree.o .core_blast_kappa.o .core_blast_lookup.o .core_blast_aalookup.o .core_blast_aascan.o .core_blast_nalookup.o .core_blast_nascan.o .core_blast_message.o .core_blast_options.o .core_blast_psi.o .core_na_ungapped.o .core_blast_psi_priv.o .core_blast_seg.o .core_blast_seqsrc.o .core_blast_setup.o .core_blast_stat.o .core_blast_traceback.o .core_blast_util.o .core_gapinfo.o .core_greedy_align.o .core_hspfilter_collector.o .core_hspfilter_besthit.o .core_hspfilter_culling.o .core_link_hsps.o .core_lookup_util.o .core_lookup_wrap.o .core_matrix_freq_ratios.o .core_ncbi_std.o .core_ncbi_math.o .core_blast_encoding.o .core_pattern.o .core_phi_extend.o .core_phi_gapalign.o .core_phi_lookup.o .core_blast_parameters.o .core_blast_posit.o .core_blast_program.o .core_blast_query_info.o .core_blast_tune.o .core_blast_sw.o .core_blast_dynarray.o .core_split_query.o .core_gencode_singleton.o .core_index_ungapped.o .core_blast_traceback_mt_priv.o .core_blast_hspstream_mt_utils.o .core_boost_erf.o .core_jumper.o .core_hspfilter_mapper.o .core_spliced_hits.o blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o blastp_kmer_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o magicblast_options.o magicblast.o blast_node.o blast_usage_report.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxblast.a /bin/ln -f .xblast.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xblast.dep rm .core_blast_dynarray.c .core_boost_erf.c .core_blast_itree.c .core_blast_seqsrc.c .core_ncbi_math.c .core_blast_engine.c .core_index_ungapped.c .core_blast_filter.c .core_lookup_wrap.c .core_hspfilter_besthit.c .core_gapinfo.c .core_gencode_singleton.c .core_spliced_hits.c .core_blast_psi.c .core_blast_hspstream_mt_utils.c .core_blast_diagnostics.c .core_blast_lookup.c .core_blast_nascan.c .core_blast_hspstream.c .core_na_ungapped.c .core_phi_extend.c .core_blast_nalookup.c .core_blast_encoding.c .core_blast_psi_priv.c .core_jumper.c .core_blast_aalookup.c .core_blast_util.c .core_blast_posit.c .core_hspfilter_mapper.c .core_hspfilter_culling.c .core_ncbi_std.c .core_blast_program.c .core_blast_traceback.c .core_blast_stat.c .core_blast_setup.c .core_link_hsps.c .core_pattern.c .core_greedy_align.c .core_lookup_util.c .core_blast_hits.c .core_blast_kappa.c .core_blast_message.c .core_blast_parameters.c .core_matrix_freq_ratios.c .core_hspfilter_collector.c .core_aa_ungapped.c .core_blast_traceback_mt_priv.c .core_blast_aascan.c .core_phi_lookup.c .core_blast_query_info.c .core_blast_gapalign.c .core_blast_seg.c .core_blast_sw.c .core_split_query.c .core_blast_tune.c .core_blast_options.c .core_blast_extend.c .core_phi_gapalign.c gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/api' /opt/pkg/bin/gmake -C proteinkmer -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24617 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56949 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56949 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56949 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/proteinkmer/blastkmeroptions.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' Updating dependency information for Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/pearson.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp -o blastkmer.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp -o blastkmerindex.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp -o blastkmeroptions.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biologIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp:91: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/proteinkmer/blastkmerindex.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp:652:6: warning: variable 'hashCount' set but not used [-Wunused-but-set-variable] int hashCount=0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp:737:6: warning: variable 'lsh_hits' set but not used [-Wunused-but-set-variable] int lsh_hits=0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 3 warnings generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. y/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp -o blastkmerresults.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp -o blastkmerutils.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp -o mhfile.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/pearson.cpp -o pearson.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp -o kblastapi.o /bin/rm -f libproteinkmer.a .libproteinkmer.a.stamp ar cr libproteinkmer.a blastkmer.o blastkmerindex.o blastkmeroptions.o blastkmerresults.o blastkmerutils.o mhfile.o pearson.o kblastapi.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproteinkmer.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libproteinkmer.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libproteinkmer.a /bin/ln -f .proteinkmer.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.proteinkmer.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56949 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' NOTE: skipping project "proteinkmer_unit_test" due to unmet requirements gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' NOTE: skipping project "proteinkmer_unit_test" due to unmet requirements gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /opt/pkg/bin/gmake -C format -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24617 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format TMPL=xblastformat -j3 --jobserver-auth=fifo:/var/tmp//GMfifo60731 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format TMPL=xblastformat -j3 --jobserver-auth=fifo:/var/tmp//GMfifo60731 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/format' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format TMPL=xblastformat -j3 --jobserver-auth=fifo:/var/tmp//GMfifo60731 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_results.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_interval_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:501:53: warning: 'CObjectOStreamXml' is deprecated [-Wdeprecated-declarations] unique_ptr xml_one_hit_os (new CObjectOStreamXml (one_hit_os,false)); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostrxml.hpp:66:5: note: 'CObjectOStreamXml' has been explicitly marked deprecated here NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbimisc.hpp:1197:43: note: expanded from macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:785:52: warning: 'CObjectOStreamXml' is deprecated [-Wdeprecated-declarations] unique_ptr xml_one_iter_os(new CObjectOStreamXml (one_iter_ss_os,false)); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostrxml.hpp:66:5: note: 'CObjectOStreamXml' has been explicitly marked deprecated here NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbimisc.hpp:1197:43: note: expanded from macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 1 warning generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/format' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blastxml_format.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blast_format.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/data4xml2format.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/build_archive.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/sam.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blast_async_format.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp -o blastfmtutil.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blastxml_format.cpp -o blastxml_format.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp -o blastxml2_format.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c 3 warnings generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/data4xml2format.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/data4xmlformat.hpp:155:23: warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:178:5: note: 'GetFilterString' has been explicitly marked deprecated here NCBI_DEPRECATED char* GetFilterString() const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/data4xml2format.cpp:36: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/data4xml2format.hpp:140:24: warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:178:5: note: 'GetFilterString' has been explicitly marked deprecated here NCBI_DEPRECATED char* GetFilterString() const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blast_format.cpp:49: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/data4xmlformat.hpp:155:23: warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:178:5: note: 'GetFilterString' has been explicitly marked deprecated here NCBI_DEPRECATED char* GetFilterString() const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blast_format.cpp:51: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/data4xml2format.hpp:140:24: warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:178:5: note: 'GetFilterString' has been explicitly marked deprecated here NCBI_DEPRECATED char* GetFilterString() const; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ 2 warnings generated. 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/build_archive.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 7 warnings generated. -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blast_format.cpp -o blast_format.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp -o data4xmlformat.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/data4xml2format.cpp -o data4xml2format.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/build_archive.cpp -o build_archive.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp -o vecscreen_run.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-co1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/sam.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/sam.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/format/sam_formatter.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 5 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. mmon -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/sam.cpp -o sam.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/format/blast_async_format.cpp -o blast_async_format.o /bin/rm -f libxblastformat.a .libxblastformat.a.stamp ar cr libxblastformat.a blastfmtutil.o blastxml_format.o blastxml2_format.o blast_format.o data4xmlformat.o data4xml2format.o build_archive.o vecscreen_run.o sam.o blast_async_format.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblastformat.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxblastformat.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxblastformat.a /bin/ln -f .xblastformat.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xblastformat.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/format' /opt/pkg/bin/gmake -C blastinput -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24617 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/demo/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/demo/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/demo/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT demo/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo/Makefile gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput TMPL=blastinput -j3 --jobserver-auth=fifo:/var/tmp//GMfifo64299 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput TMPL=blastinput -j3 --jobserver-auth=fifo:/var/tmp//GMfifo64299 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput TMPL=blastinput -j3 --jobserver-auth=fifo:/var/tmp//GMfifo64299 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_input.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blastp_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blastn_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blastx_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_inpuIn file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_input.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_scope_src.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/data_loader.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/annot_type_selector.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ t.cpp -o blast_input.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp -o blast_fasta_input.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp -o blast_scope_src.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp -o blast_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp -o cmdline_flags.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp -o blast_input_aux.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blastp_args.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blastp_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blastn_args.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blastn_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp:20: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/rmblastn_args.hpp:21: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blastx_args.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blastx_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blastp_args.cpp -o blastp_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp -o rmblastn_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blastx_args.cpp -o blastx_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp -o tblastn_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFIL1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/tblastn_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/tblastx_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/psiblast_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/igblastn_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. E_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp -o tblastx_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/User1 warning generated. 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/igblastp_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/deltablast_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/magicblast_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp:67:16: warning: unused variable 'kFilterByDefault' [-Wunused-variable] const bool kFilterByDefault = false; ^ 2 warnings generated. 1 warning generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:205:48: warning: 'GetCpuCount' is deprecated [-Wdeprecated-declarations] const int kMaxValue = static_cast(GetCpuCount()); ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/corelib/ncbi_system.hpp:478:8: note: 'GetCpuCount' has been explicitly marked deprecated here inline NCBI_DEPRECATED ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/kblastp_args.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_types.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 2 warnings generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/util/sequence.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. s/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp -o magicblast_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp -o kblastp_args.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp -o blast_asn1_input.o /bin/rm -f libblastinput.a .libblastinput.a.stamp ar cr libblastinput.a blast_input.o blast_fasta_input.o blast_scope_src.o blast_args.o cmdline_flags.o blast_input_aux.o blastp_args.o blastn_args.o rmblastn_args.o blastx_args.o tblastn_args.o tblastx_args.o psiblast_args.o rpsblast_args.o rpstblastn_args.o igblastn_args.o igblastp_args.o deltablast_args.o magicblast_args.o kblastp_args.o blast_asn1_input.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastinput.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libblastinput.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libblastinput.a /bin/ln -f .blastinput.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.blastinput.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' /opt/pkg/bin/gmake -C unit_test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo64299 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' /opt/pkg/bin/gmake -C demo -j3 --jobserver-auth=fifo:/var/tmp//GMfifo64299 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' /opt/pkg/bin/gmake -C blast_sra_input -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24617 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input' /opt/pkg/bin/gmake -C igblast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24617 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/igblast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/igblast TMPL=igblast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo69989 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/igblast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/igblast TMPL=igblast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo69989 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/igblast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/igblast TMPL=igblast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo69989 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/igblast/igblast.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/igblast/igblast.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/igblast/igblast.cpp:199:17: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ 2 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/igblast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/igblast/igblast.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o /bin/rm -f libigblast.a .libigblast.a.stamp ar cr libigblast.a igblast.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libigblast.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libigblast.a /bin/ln -f .igblast.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.igblast.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/igblast' /opt/pkg/bin/gmake -C gumbel_params -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24617 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/gumbel_params' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/gumbel_params' /opt/pkg/bin/gmake -C vdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24617 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project vdb due to unmet requirements: VDB gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/vdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/vdb TMPL=vdb2blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo71524 mark-as-disabled gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/vdb' /opt/pkg/bin/gmake -C unit_tests -j3 --jobserver-auth=fifo:/var/tmp//GMfifo24617 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -C blast_format -j3 --jobserver-auth=fifo:/var/tmp//GMfifo71636 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project blast_format due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' /opt/pkg/bin/gmake -C blastdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo71636 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project blastdb due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' /opt/pkg/bin/gmake -C seqdb_reader -j3 --jobserver-auth=fifo:/var/tmp//GMfifo71636 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project seqdb_reader due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' /opt/pkg/bin/gmake -C api -j3 --jobserver-auth=fifo:/var/tmp//GMfifo71636 all_r || exit 5 gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project api due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[7]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: warning: -j3 forced in submake: resetting jobserver mode. gmake[7]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: warning: -j3 forced in submake: resetting jobserver mode. gmake[7]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test_util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo71729 mark-as-disabled gmake[7]: warning: -j3 forced in submake: resetting jobserver mode. gmake[7]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: warning: -j3 forced in submake: resetting jobserver mode. gmake[7]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: warning: -j3 forced in submake: resetting jobserver mode. gmake[7]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/blast/unit_tests/api TMPL=seqalign_util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo71729 mark-as-disabled gmake[7]: warning: -j3 forced in submake: resetting jobserver mode. gmake[7]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/blast' /opt/pkg/bin/gmake -C segmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9526 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/segmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/segmask TMPL=xalgosegmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo71891 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/segmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/segmask TMPL=xalgosegmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo71891 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/segmask' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/segmask TMPL=xalgosegmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo71891 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/segmask/segmask.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/segmask/segmask.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/bioseq_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/segmask' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/segmask/segmask.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/algo/segmask/segmask.cpp -o segmask.o /bin/rm -f libxalgosegmask.a .libxalgosegmask.a.stamp ar cr libxalgosegmask.a segmask.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgosegmask.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libxalgosegmask.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libxalgosegmask.a /bin/ln -f .xalgosegmask.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.xalgosegmask.dep gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/segmask' /opt/pkg/bin/gmake -C align -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9526 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/align' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/align' /opt/pkg/bin/gmake -C structure -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9526 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/structure' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/structure' /opt/pkg/bin/gmake -C gnomon -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9526 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/gnomon' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/gnomon' /opt/pkg/bin/gmake -C tree -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9526 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/tree' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/tree' /opt/pkg/bin/gmake -C phy_tree -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9526 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/phy_tree' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/phy_tree' /opt/pkg/bin/gmake -C seqqa -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9526 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/seqqa' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/seqqa' /opt/pkg/bin/gmake -C cobalt -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9526 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/cobalt' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/cobalt' /opt/pkg/bin/gmake -C text -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9526 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/text' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/text' /opt/pkg/bin/gmake -C volume_merge -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9526 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/volume_merge' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/volume_merge' /opt/pkg/bin/gmake -C primer -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9526 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/primer' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/primer' /opt/pkg/bin/gmake -C id_mapper -j3 --jobserver-auth=fifo:/var/tmp//GMfifo9526 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/id_mapper' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo/id_mapper' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/algo' /opt/pkg/bin/gmake -C misc -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56877 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/clog/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/grid_cgi/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/xmlwrapp/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/clog/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/clog/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/grid_cgi/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/grid_cgi/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/xmlwrapp/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/xmlwrapp/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/eutils_client/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/hydra_client/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/discrepancy/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/discrepancy/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/discrepancy/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/hydra_client/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/hydra_client/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/eutils_client/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/eutils_client/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/xmlreaders/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/hgvs/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/netstorage/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/xmlreaders/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/xmlreaders/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/netstorage/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/netstorage/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/hgvs/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/hgvs/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/biosample_util/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/data_loaders_util/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/lapackwrapp/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/biosample_util/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/biosample_util/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/lapackwrapp/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/lapackwrapp/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/data_loaders_util/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/data_loaders_util/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/pmcidconv_client/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/cgi_redirect/Makefile.in` /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT clog/Makefile test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/pmcidconv_client/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/pmcidconv_client/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/cgi_redirect/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/misc/cgi_redirect/Makefile.in /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT grid_cgi/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT xmlwrapp/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/clog/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/xmlwrapp/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/grid_cgi/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT eutils_client/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT hydra_client/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT discrepancy/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/eutils_client/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/discrepancy/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/hydra_client/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT xmlreaders/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT hgvs/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT netstorage/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/xmlreaders/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/hgvs/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/netstorage/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT biosample_util/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT data_loaders_util/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT lapackwrapp/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/biosample_util/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/data_loaders_util/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/lapackwrapp/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT pmcidconv_client/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT cgi_redirect/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/pmcidconv_client/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/cgi_redirect/Makefile /opt/pkg/bin/gmake -C third_party -j3 --jobserver-auth=fifo:/var/tmp//GMfifo73418 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/third_party' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/third_party' /opt/pkg/bin/gmake -C third_party_static -j3 --jobserver-auth=fifo:/var/tmp//GMfifo73418 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/third_party_static' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project third_party_static due to unmet requirements: -DLL gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/third_party_static' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Nothing to be done for 'mark-as-disabled_r'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/third_party_static' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/third_party_static' /opt/pkg/bin/gmake -C clog -j3 --jobserver-auth=fifo:/var/tmp//GMfifo73418 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/clog' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/clog' /opt/pkg/bin/gmake -C grid_cgi -j3 --jobserver-auth=fifo:/var/tmp//GMfifo73418 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/grid_cgi' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/grid_cgi' /opt/pkg/bin/gmake -C xmlwrapp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo73418 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/xmlwrapp' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/xmlwrapp' /opt/pkg/bin/gmake -C eutils_client -j3 --jobserver-auth=fifo:/var/tmp//GMfifo73418 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/eutils_client' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/eutils_client' /opt/pkg/bin/gmake -C hydra_client -j3 --jobserver-auth=fifo:/var/tmp//GMfifo73418 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/hydra_client' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/hydra_client' /opt/pkg/bin/gmake -C discrepancy -j3 --jobserver-auth=fifo:/var/tmp//GMfifo73418 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/discrepancy' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/discrepancy' /opt/pkg/bin/gmake -C xmlreaders -j3 --jobserver-auth=fifo:/var/tmp//GMfifo73418 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/xmlreaders' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/xmlreaders' /opt/pkg/bin/gmake -C hgvs -j3 --jobserver-auth=fifo:/var/tmp//GMfifo73418 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/hgvs' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/hgvs' /opt/pkg/bin/gmake -C netstorage -j3 --jobserver-auth=fifo:/var/tmp//GMfifo73418 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/netstorage' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/netstorage' /opt/pkg/bin/gmake -C jsonwrapp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo73418 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/jsonwrapp' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /opt/pkg/bin/gmake -C test -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76616 all_r || exit 5 gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' NOTE: skipping project "test_jsonwrapp" due to unmet requirements gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: *** No rule to make target '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' NOTE: skipping project "test_jsonwrapp" due to unmet requirements gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/jsonwrapp' /opt/pkg/bin/gmake -C biosample_util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo73418 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/biosample_util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/biosample_util' /opt/pkg/bin/gmake -C data_loaders_util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo73418 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/data_loaders_util' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/data_loaders_util' /opt/pkg/bin/gmake -C lapackwrapp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo73418 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/lapackwrapp' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/lapackwrapp' /opt/pkg/bin/gmake -C pmcidconv_client -j3 --jobserver-auth=fifo:/var/tmp//GMfifo73418 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/pmcidconv_client' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/pmcidconv_client' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C cgi_redirect -j3 --jobserver-auth=fifo:/var/tmp//GMfifo73418 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/cgi_redirect' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc/cgi_redirect' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/misc' /opt/pkg/bin/gmake -C gui -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56877 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/gui' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/gui' /opt/pkg/bin/gmake -C app -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56877 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/asn2asn/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/asn2fasta/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/asn2flat/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/asn2flat/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/asn2flat/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/asn2fasta/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/asn2fasta/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/asn2asn/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/asn2asn/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/flat2asn/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/asnval/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/asn_cleanup/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/asn_cleanup/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/asn_cleanup/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/flat2asn/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/flat2asn/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/asnval/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/asnval/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/id1_fetch/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/convert_seq/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/nmer_repeats/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/id1_fetch/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/id1_fetch/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/convert_seq/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/convert_seq/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/nmer_repeats/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/nmer_repeats/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/objmgr/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/gi2taxid/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/netschedule/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/gi2taxid/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/gi2taxid/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/netschedule/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/netschedule/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/objmgr/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/objmgr/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/grid/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/netstorage/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/igblast/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/grid/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/grid/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/igblast/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/igblast/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/netstorage/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/netstorage/Makefile.in /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/vecscreen/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/agpconvert/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/id2_fetch/Makefile.in` test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/vecscreen/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/vecscreen/Makefile.in test -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/agpconvert/Makefile.in || /bin/cp -p /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/build-system/Makefile.in.skel /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/agpconvert/Makefile.in test -f 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/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT multipattern/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/asn_cache/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT prt2fsm/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/multipattern/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/magicblast/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT pub_report/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT gff_deconcat/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/prt2fsm/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT sub_fuse/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/gff_deconcat/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/pub_report/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT feat_import/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT split_cache/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/sub_fuse/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT wig2table/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/feat_import/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/split_cache/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT netcache/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT rmblastn/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/wig2table/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT dblb/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/netcache/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/rmblastn/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT tls/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT idfetch/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/dblb/Makefile /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/update_configurable.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT pubseq_gateway/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/tls/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/idfetch/Makefile config.status: creating /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/pubseq_gateway/Makefile /opt/pkg/bin/gmake -C asn2asn -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/asn2asn' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/asn2asn' /opt/pkg/bin/gmake -C asn2fasta -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/asn2fasta' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/asn2fasta' /opt/pkg/bin/gmake -C asn2flat -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/asn2flat' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/asn2flat' /opt/pkg/bin/gmake -C flat2asn -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/flat2asn' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/flat2asn' /opt/pkg/bin/gmake -C asnval -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/asnval' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/asnval' /opt/pkg/bin/gmake -C asn_cleanup -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/asn_cleanup' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/asn_cleanup' /opt/pkg/bin/gmake -C id1_fetch -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/id1_fetch' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/id1_fetch' /opt/pkg/bin/gmake -C blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/Makefile.legacy_blast builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88376 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/legacy_blast.pl /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/legacy_blast.pl /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/legacy_blast.pl gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/Makefile.update_blastdb builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88376 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/update_blastdb.pl /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/update_blastdb.pl /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/update_blastdb.pl gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/Makefile.get_species_taxids builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88376 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/get_species_taxids.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/get_species_taxids.sh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/get_species_taxids.sh gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/Makefile.cleanup-blastdb-volumes builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88376 all gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/cleanup-blastdb-volumes.py /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/cleanup-blastdb-volumes.py /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/cleanup-blastdb-volumes.py gmake[6]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=blast_app_util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88329 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=blast_app_util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88329 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=blastp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88329 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=blastn -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88329 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=blastx -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88329 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=tblastn -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88329 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=tblastx -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88329 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=psiblast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88329 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=rpsblast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88329 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=rpstblastn -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88329 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=blast_formatter -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88329 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=blast_report -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88329 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=deltablast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88329 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=seedtop -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88329 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=blast_app_util -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88329 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blast_app_util.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blast_app_util.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blast_app_util.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blast_app_util.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blast_app_util.cpp -o blast_app_util.o /bin/rm -f libblast_app_util.a .libblast_app_util.a.stamp ar cr libblast_app_util.a blast_app_util.o /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_app_util.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib /bin/ln -f libblast_app_util.a /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libblast_app_util.a /bin/ln -f .blast_app_util.dep /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/status/.blast_app_util.dep gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=blastp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88329 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastp_node.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastp_app.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastp_node.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastp_app.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastp_node.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastp_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastp -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastp_node.cpp -o blastp_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastp -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastp_app.cpp -o blastp_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastp_node.o blastp_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastp strip blastp /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastp /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f blastp /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/blastp gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=blastn -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88329 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastn_app.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastn_node.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastn_node.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastn_app.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37In file included from : In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp::5818: : warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189 : m_Host(move(host)), m_Port(port) {} ^ std:::18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastn_node.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastn_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastn -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastn_node.cpp -o blastn_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastn -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastn_app.cpp -o blastn_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastn_node.o blastn_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lblast_app_util -lxformat-static -lxcleanup-static -lvalid-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lsubmit-static -lxregexp-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastn strip blastn /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f blastn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/blastn gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=blastx -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88329 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastx_node.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastx_app.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastx_node.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastx_app.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastx_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastx_node.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastx -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastx_node.cpp -o blastx_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastx -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blastx_app.cpp -o blastx_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastx_node.o blastx_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastx strip blastx /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastx /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f blastx /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/blastx gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=tblastn -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88329 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/tblastn_app.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/tblastn_node.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/tblastn_app.cpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/tblastn_node.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' Updating Updating dependency dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/tblastn_node.cpp. information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/tblastn_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=tblastn -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/tblastn_node.cpp -o tblastn_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=tblastn -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/tblastn_app.cpp -o tblastn_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O tblastn_node.o tblastn_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o tblastn strip tblastn /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f tblastn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/tblastn gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=tblastx -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88329 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/tblastx_app.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/tblastx_app.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/tblastx_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=tblastx -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/tblastx_app.cpp -o tblastx_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O tblastx_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o tblastx strip tblastx /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastx /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f tblastx /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/tblastx gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=psiblast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88329 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/psiblast_app.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/psiblast_app.cpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/psiblast_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=psiblast -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/psiblast_app.cpp -o psiblast_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O psiblast_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o psiblast strip psiblast /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f psiblast /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/psiblast gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=rpsblast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88329 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/rpsblast_node.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/rpsblast_app.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/rpsblast_app.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/rpsblast_node.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/rpsblast_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/rpsblast_node.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=rpsblast -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/rpsblast_node.cpp -o rpsblast_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=rpsblast -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/rpsblast_app.cpp -o rpsblast_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O rpsblast_node.o rpsblast_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o rpsblast strip rpsblast /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpsblast /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f rpsblast /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/rpsblast gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=rpstblastn -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88329 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/rpstblastn_node.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/rpstblastn_app.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/rpstblastn_app.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/rpstblastn_node.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/rpstblastn_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/rpstblastn_node.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=rpstblastn -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/rpstblastn_node.cpp -o rpstblastn_node.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=rpstblastn -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/rpstblastn_app.cpp -o rpstblastn_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O rpstblastn_node.o rpstblastn_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o rpstblastn strip rpstblastn /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpstblastn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f rpstblastn /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/rpstblastn gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=blast_formatter -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88329 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blast_formatter.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blast_formatter.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blast_formatter.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=blast_formatter -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blast_formatter.cpp -o blast_formatter.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blast_formatter.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blast_formatter strip blast_formatter /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_formatter /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f blast_formatter /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/blast_formatter gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=blast_report -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88329 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blast_report.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/iterator.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blast_report.cpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blast_report.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=blast_report -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/blast_report.cpp -o blast_report.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blast_report.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blast_report strip blast_report /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_report /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f blast_report /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/blast_report gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=deltablast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88329 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/deltablast_app.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/deltablast.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/deltablast_app.cpp:45: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/deltablast_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=deltablast -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/deltablast_app.cpp -o deltablast_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O deltablast_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o deltablast strip deltablast /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f deltablast /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f deltablast /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/deltablast gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast TMPL=seedtop -j3 --jobserver-auth=fifo:/var/tmp//GMfifo88329 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/seedtop_app.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/seedtop.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_aux.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqalign/Seq_align_set_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/seedtop_app.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/seedtop_app.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=seedtop -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blast/seedtop_app.cpp -o seedtop_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O seedtop_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o seedtop strip seedtop /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seedtop /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f seedtop /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/seedtop gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blast' /opt/pkg/bin/gmake -C convert_seq -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/convert_seq' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/convert_seq' /opt/pkg/bin/gmake -C nmer_repeats -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/nmer_repeats' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/nmer_repeats' /opt/pkg/bin/gmake -C objmgr -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/objmgr' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/objmgr' /opt/pkg/bin/gmake -C gi2taxid -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/gi2taxid' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/gi2taxid' /opt/pkg/bin/gmake -C netschedule -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/netschedule' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/netschedule' /opt/pkg/bin/gmake -C grid -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/grid' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/grid' /opt/pkg/bin/gmake -C netstorage -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/netstorage' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/netstorage' /opt/pkg/bin/gmake -C igblast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/igblast' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/igblast' /opt/pkg/bin/gmake -C winmasker -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/winmasker/Makefile.windowmasker_2.2.22_adapter builddir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/winmasker -j3 --jobserver-auth=fifo:/var/tmp//GMfifo28387 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/windowmasker_2.2.22_adapter.py gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/winmasker TMPL=winmasker -j3 --jobserver-auth=fifo:/var/tmp//GMfifo28305 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/winmasker TMPL=winmasker -j3 --jobserver-auth=fifo:/var/tmp//GMfifo28305 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/dustmask/symdust.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/winmasker/win_mask_app.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/fasta.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:43:20: warning: unused function 'iupacna_to_blastna' [-Wunused-function] static inline char iupacna_to_blastna( char c ) ^ 2 warnings generated. /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/winmasker/win_mask_app.cpp:234:11: warning: variable 'total' set but not used [-Wunused-but-set-variable] Uint4 total = 0, total_masked = 0; ^ /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/winmasker/win_mask_app.cpp:234:22: warning: variable 'total_masked' set but not used [-Wunused-but-set-variable] Uint4 total = 0, total_masked = 0; ^ 3 warnings generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/winmasker/win_mask_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/winmasker/main.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=windowmasker -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/winmasker/main.cpp -o main.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=windowmasker -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/winmasker/win_mask_app.cpp -o win_mask_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=windowmasker -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp -o win_mask_sdust_masker.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O main.o win_mask_app.o win_mask_sdust_masker.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lxalgowinmask -lxalgodustmask -lblast -lcomposition_adjustment -lseqmasks_io -lseqdb -lblastdb -ltables -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o windowmasker strip windowmasker /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f windowmasker /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f windowmasker /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/windowmasker gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/winmasker' /opt/pkg/bin/gmake -C dustmasker -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/dustmasker' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/dustmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/dustmasker' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/dustmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/dustmasker' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/dustmasker TMPL=dustmasker -j3 --jobserver-auth=fifo:/var/tmp//GMfifo30774 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/dustmasker' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/dustmasker' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/dustmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/dustmasker' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/dustmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/dustmasker' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/dustmasker TMPL=dustmasker -j3 --jobserver-auth=fifo:/var/tmp//GMfifo30774 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_entry_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/dustmasker/main.cpp:34: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/seq_entry_handle.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/dustmasker' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/dustmasker/main.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=dustmasker -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/dustmasker/main.cpp -o main.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=dustmasker -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp -o dust_mask_app.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O main.o dust_mask_app.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lxalgodustmask -lseqmasks_io -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lseqdb -lblastdb -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o dustmasker strip dustmasker /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f dustmasker /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f dustmasker /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/dustmasker gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/dustmasker' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/dustmasker' /opt/pkg/bin/gmake -C segmasker -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/segmasker' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/segmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/segmasker' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/segmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/segmasker' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/segmasker TMPL=segmasker -j3 --jobserver-auth=fifo:/var/tmp//GMfifo32852 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/segmasker' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/segmasker' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/segmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/segmasker' gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/segmasker' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/segmasker' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/segmasker TMPL=segmasker -j3 --jobserver-auth=fifo:/var/tmp//GMfifo32852 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/segmasker/segmasker.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/segmasker' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/segmasker/segmasker.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=segmasker -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/segmasker/segmasker.cpp -o segmasker.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O segmasker.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lxobjsimple-static -lxalgosegmask-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o segmasker strip segmasker /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f segmasker /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f segmasker /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/segmasker gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/segmasker' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/segmasker' /opt/pkg/bin/gmake -C blastdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb TMPL=blastdbcmd -j3 --jobserver-auth=fifo:/var/tmp//GMfifo34792 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb TMPL=makeblastdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo34792 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb TMPL=blastdb_aliastool -j3 --jobserver-auth=fifo:/var/tmp//GMfifo34792 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb TMPL=blastdbcheck -j3 --jobserver-auth=fifo:/var/tmp//GMfifo34792 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb TMPL=convert2blastmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo34792 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb TMPL=blastdbcp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo34792 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb TMPL=makeprofiledb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo34792 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb TMPL=blastdb_convert -j3 --jobserver-auth=fifo:/var/tmp//GMfifo34792 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb TMPL=blastdb_path -j3 --jobserver-auth=fifo:/var/tmp//GMfifo34792 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb TMPL=makeclusterdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo34792 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb TMPL=blastdbcmd -j3 --jobserver-auth=fifo:/var/tmp//GMfifo34792 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostrjson.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdbcmd.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastdbcmd -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdbcmd.cpp -o blastdbcmd.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastdbcmd.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastdbcmd strip blastdbcmd /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcmd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f blastdbcmd /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/blastdbcmd gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb TMPL=makeblastdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo34792 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/masked_range_set.cpp:31: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/masked_range_set.hpp:33: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_writer/build_db.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/makeblastdb.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostrjson.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ 1 warning generated. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/makeblastdb.cpp:61: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/masked_range_set.cpp. Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/makeblastdb.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=makeblastdb -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/makeblastdb.cpp -o makeblastdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=makeblastdb -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/masked_range_set.cpp -o masked_range_set.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O makeblastdb.o masked_range_set.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o makeblastdb strip makeblastdb /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeblastdb /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f makeblastdb /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/makeblastdb gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb TMPL=blastdb_aliastool -j3 --jobserver-auth=fifo:/var/tmp//GMfifo34792 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:594:18: warning: variable 'line_ctr' set but not used [-Wunused-but-set-variable] unsigned int line_ctr = 0; ^ 6 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastdb_aliastool -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp -o blastdb_aliastool.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastdb_aliastool.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastdb_aliastool strip blastdb_aliastool /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_aliastool /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f blastdb_aliastool /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/blastdb_aliastool gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb TMPL=blastdbcheck -j3 --jobserver-auth=fifo:/var/tmp//GMfifo34792 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:47: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdbcheck.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastdbcheck -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdbcheck.cpp -o blastdbcheck.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastdbcheck.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastdbcheck strip blastdbcheck /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcheck /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f blastdbcheck /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/blastdbcheck gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb TMPL=convert2blastmask -j3 --jobserver-auth=fifo:/var/tmp//GMfifo34792 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/readers/fasta.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/convert2blastmask.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=convert2blastmask -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/convert2blastmask.cpp -o convert2blastmask.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O convert2blastmask.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lproteinkmer -lxblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -llzo2 -lzstd -lz -lresolv -llmdb -lpthread -lm -Wl,-framework,ApplicationServices -lpthread -o convert2blastmask strip convert2blastmask /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f convert2blastmask /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f convert2blastmask /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/convert2blastmask gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb TMPL=blastdbcp -j3 --jobserver-auth=fifo:/var/tmp//GMfifo34792 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdbcp.cpp:32: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdbcp.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdbcp.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastdbcp -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdbcp.cpp -o blastdbcp.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastdbcp.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lmedline -lbiblio -lgeneral -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lwritedb -lproteinkmer -lxblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxser -lxcgi -lxhtml -lxconnect -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastdbcp strip blastdbcp /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcp /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f blastdbcp /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/blastdbcp gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb TMPL=makeprofiledb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo34792 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistrasn.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objistr.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:64: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/makeprofiledb.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=makeprofiledb -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/makeprofiledb.cpp -o makeprofiledb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O makeprofiledb.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o makeprofiledb strip makeprofiledb /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeprofiledb /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f makeprofiledb /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/makeprofiledb gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb TMPL=blastdb_convert -j3 --jobserver-auth=fifo:/var/tmp//GMfifo34792 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objmgr/scope.hpp:44: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:49: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:385:13: warning: variable 'vol_ctr' set but not used [-Wunused-but-set-variable] int vol_ctr(0); ^ 6 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdb_convert.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastdb_convert -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdb_convert.cpp -o blastdb_convert.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastdb_convert.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastdb_convert strip blastdb_convert /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_convert /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f blastdb_convert /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/blastdb_convert gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb TMPL=blastdb_path -j3 --jobserver-auth=fifo:/var/tmp//GMfifo34792 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdb_path.cpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdb_path.cpp:39: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: 5 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdb_path.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastdb_path -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/blastdb_path.cpp -o blastdb_path.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O blastdb_path.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o blastdb_path strip blastdb_path /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_path /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f blastdb_path /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/blastdb_path gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -f /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb TMPL=makeclusterdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo34792 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/makeclusterdb.cpp:35: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostrjson.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objostr.hpp:43: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objhook.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/objecttype.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/objectinfo.hpp:40: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/impl/stdtypes.hpp:36: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/serial/serialbase.hpp:46: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/ncbi_bitset.hpp:38: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/util/bitset/bm.h:6579:14: warning: variable 'block_idx' set but not used [-Wunused-but-set-variable] unsigned block_idx = 0; ^ In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/makeclusterdb.cpp:60: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} ^ std:: /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/makeclusterdb.cpp:565:10: warning: unused variable 'success' [-Wunused-variable] bool success = m_DB->EndBuild(); ^ 6 warnings generated. gmake[5]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/makeclusterdb.cpp. /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -m64 -fpascal-strings -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/python3.11 -Wno-deprecated-register -fno-common -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/inc -I/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/include -DNCBI_APP_BUILT_AS=makeclusterdb -DNCBI_BUILD_SESSION_ID=3B23D656-1A95-4E81-88B4-0E199952C028 /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/src/app/blastdb/makeclusterdb.cpp -o makeclusterdb.o /Users/pbulk/build/biology/ncbi-blast+/work/.cwrapper/bin/clang++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/opt/pkg/lib/ncbi-tools++ -m64 -flat_namespace -headerpad_max_install_names -L/opt/pkg/lib -dylib_file /opt/pkg/lib/ncbi-tools++/libdbapi_driver.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libdbapi_driver.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libgui_utils.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libgui_utils.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xloader_genbank.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_id1.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.dylib -dylib_file /opt/pkg/lib/ncbi-tools++/libncbi_xreader_pubseqos.dylib:/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib/libncbi_xreader_pubseqos.dylib -O makeclusterdb.o -L/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lzstd -lz -lresolv -lm -Wl,-framework,ApplicationServices -lpthread -o makeclusterdb strip makeclusterdb /opt/pkg/bin/mksh /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeclusterdb /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin /bin/ln -f makeclusterdb /Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/bin/makeclusterdb gmake[5]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastdb' /opt/pkg/bin/gmake -C blastvdb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastvdb' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project blastvdb due to unmet requirements: VDB gmake[4]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastvdb' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Nothing to be done for 'mark-as-disabled_r'. gmake[4]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastvdb' gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/blastvdb' /opt/pkg/bin/gmake -C vecscreen -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/vecscreen' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/vecscreen' /opt/pkg/bin/gmake -C agpconvert -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/agpconvert' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/agpconvert' /opt/pkg/bin/gmake -C id2_fetch -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/id2_fetch' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/id2_fetch' /opt/pkg/bin/gmake -C agp_validate -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/agp_validate' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/agp_validate' /opt/pkg/bin/gmake -C objextract -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/objextract' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/objextract' /opt/pkg/bin/gmake -C bdb_env_keeper -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/bdb_env_keeper' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/bdb_env_keeper' /opt/pkg/bin/gmake -C nw_aligner -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/nw_aligner' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/nw_aligner' /opt/pkg/bin/gmake -C speedtest -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/speedtest' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/speedtest' /opt/pkg/bin/gmake -C idmapper -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/idmapper' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/idmapper' /opt/pkg/bin/gmake -C formatguess -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/formatguess' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/formatguess' /opt/pkg/bin/gmake -C multireader -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/multireader' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/multireader' /opt/pkg/bin/gmake -C read_blast_result -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/read_blast_result' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/read_blast_result' /opt/pkg/bin/gmake -C splign -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/splign' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/splign' /opt/pkg/bin/gmake -C hfilter -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/hfilter' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/hfilter' /opt/pkg/bin/gmake -C annotwriter -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/annotwriter' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/annotwriter' /opt/pkg/bin/gmake -C compart -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/compart' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/compart' /opt/pkg/bin/gmake -C streamtest -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/streamtest' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/streamtest' /opt/pkg/bin/gmake -C lds2_indexer -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/lds2_indexer' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/lds2_indexer' /opt/pkg/bin/gmake -C discrepancy_report -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/discrepancy_report' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/discrepancy_report' /opt/pkg/bin/gmake -C biosample_chk -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/biosample_chk' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/biosample_chk' /opt/pkg/bin/gmake -C bsdiff -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/bsdiff' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/bsdiff' /opt/pkg/bin/gmake -C gap_stats -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/gap_stats' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/gap_stats' /opt/pkg/bin/gmake -C table2asn -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/table2asn' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/table2asn' /opt/pkg/bin/gmake -C srcchk -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/srcchk' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/srcchk' /opt/pkg/bin/gmake -C tableval -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/tableval' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/tableval' /opt/pkg/bin/gmake -C ncbi_encrypt -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/ncbi_encrypt' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/ncbi_encrypt' /opt/pkg/bin/gmake -C ssub_fork -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/ssub_fork' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/ssub_fork' /opt/pkg/bin/gmake -C asn_cache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/asn_cache' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/asn_cache' /opt/pkg/bin/gmake -C magicblast -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/magicblast' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/magicblast' /opt/pkg/bin/gmake -C multipattern -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/multipattern' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/multipattern' /opt/pkg/bin/gmake -C prt2fsm -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/prt2fsm' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/prt2fsm' /opt/pkg/bin/gmake -C pub_report -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/pub_report' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/pub_report' /opt/pkg/bin/gmake -C gff_deconcat -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/gff_deconcat' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/gff_deconcat' /opt/pkg/bin/gmake -C sub_fuse -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/sub_fuse' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/sub_fuse' /opt/pkg/bin/gmake -C feat_import -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/feat_import' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/feat_import' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C split_cache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/split_cache' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/split_cache' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C wig2table -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/wig2table' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/wig2table' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C netcache -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/netcache' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/netcache' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C rmblastn -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/rmblastn' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/rmblastn' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C dblb -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/dblb' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/dblb' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C tls -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/tls' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/tls' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C idfetch -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/idfetch' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/idfetch' NCBI_BUT_EXPENDABLE=' (but expendable)' /opt/pkg/bin/gmake -C pubseq_gateway -j3 --jobserver-auth=fifo:/var/tmp//GMfifo76990 all_r || exit 5 gmake[3]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/pubseq_gateway' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[3]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app/pubseq_gateway' gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/app' /opt/pkg/bin/gmake -C sample -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56877 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sample' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/sample' /opt/pkg/bin/gmake -C internal -j3 --jobserver-auth=fifo:/var/tmp//GMfifo56877 all_r || exit 5 gmake[2]: Entering directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/internal' gmake[2]: warning: -j3 forced in submake: resetting jobserver mode. gmake[2]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build/internal' gmake[1]: Leaving directory '/Users/pbulk/build/biology/ncbi-blast+/work/ncbi-blast-2.14.0+-src/c++/ReleaseMT/build'