=> Bootstrap dependency digest>=20211023: found digest-20220214 ===> Building for racon-1.4.3 [ 3%] Building CXX object vendor/edlib/CMakeFiles/edlib_static.dir/edlib/src/edlib.cpp.o [ 6%] Building CXX object vendor/logger/CMakeFiles/logger.dir/src/logger.cpp.o [ 9%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/adler32.o /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/adler32.c:63:15: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] uLong ZEXPORT adler32_z(adler, buf, len) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/adler32.c:134:15: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] uLong ZEXPORT adler32(adler, buf, len) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/adler32.c:143:13: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] local uLong adler32_combine_(adler1, adler2, len2) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/adler32.c:143:13: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/adler32.c:172:15: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] uLong ZEXPORT adler32_combine(adler1, adler2, len2) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/adler32.c:180:15: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] uLong ZEXPORT adler32_combine64(adler1, adler2, len2) ^ 6 warnings generated. [ 12%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/compress.o /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/compress.c:22:13: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] int ZEXPORT compress2 (dest, destLen, source, sourceLen, level) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/compress.c:68:13: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] int ZEXPORT compress (dest, destLen, source, sourceLen) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/compress.c:81:15: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] uLong ZEXPORT compressBound (sourceLen) ^ 3 warnings generated. [ 15%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/crc32.o /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c:202:23: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] unsigned long ZEXPORT crc32_z(crc, buf, len) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c:237:23: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] unsigned long ZEXPORT crc32(crc, buf, len) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c:266:21: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] local unsigned long crc32_little(crc, buf, len) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c:266:21: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c:306:21: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] local unsigned long crc32_big(crc, buf, len) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c:306:21: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c:344:21: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] local unsigned long gf2_matrix_times(mat, vec) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c:344:21: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c:361:12: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] local void gf2_matrix_square(square, mat) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c:361:12: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c:372:13: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] local uLong crc32_combine_(crc1, crc2, len2) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c:372:13: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c:428:15: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] uLong ZEXPORT crc32_combine(crc1, crc2, len2) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c:436:15: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] uLong ZEXPORT crc32_combine64(crc1, crc2, len2) ^ 14 warnings generated. [ 18%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/deflate.o [ 21%] Linking CXX static library lib/liblogger.a /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:201:12: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] local void slide_hash(s) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:201:12: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:228:13: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] int ZEXPORT deflateInit_(strm, level, version, stream_size) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:240:13: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] int ZEXPORT deflateInit2_(strm, level, method, windowBits, memLevel, strategy, ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:353:11: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] local int deflateStateCheck (strm) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:353:11: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:376:13: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] int ZEXPORT deflateSetDictionary (strm, dictionary, dictLength) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:445:13: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] int ZEXPORT deflateGetDictionary (strm, dictionary, dictLength) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:467:13: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] int ZEXPORT deflateResetKeep (strm) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:505:13: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] int ZEXPORT deflateReset (strm) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:517:13: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] int ZEXPORT deflateSetHeader (strm, head) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:528:13: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] int ZEXPORT deflatePending (strm, pending, bits) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:542:13: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] int ZEXPORT deflatePrime (strm, bits, value) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:568:13: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] int ZEXPORT deflateParams(strm, level, strategy) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:617:13: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] int ZEXPORT deflateTune(strm, good_length, max_lazy, nice_length, max_chain) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:652:15: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] uLong ZEXPORT deflateBound(strm, sourceLen) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:716:12: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] local void putShortMSB (s, b) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:716:12: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:730:12: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] local void flush_pending(strm) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:730:12: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:763:13: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] int ZEXPORT deflate (strm, flush) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:1076:13: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] int ZEXPORT deflateEnd (strm) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:1102:13: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] int ZEXPORT deflateCopy (dest, source) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:1164:16: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] local unsigned read_buf(strm, buf, size) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:1164:16: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:1194:12: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] local void lm_init (s) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:1194:12: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:1236:12: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] local uInt longest_match(s, cur_match) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:1236:12: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:1482:12: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] local void fill_window(s) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:1482:12: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:1643:19: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] local block_state deflate_stored(s, flush) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:1643:19: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:1824:19: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] local block_state deflate_fast(s, flush) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:1824:19: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:1926:19: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] local block_state deflate_slow(s, flush) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:1926:19: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:2057:19: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] local block_state deflate_rle(s, flush) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:2057:19: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:2130:19: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] local block_state deflate_huff(s, flush) ^ /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:2130:19: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] [ 24%] Linking CXX static library ../../lib/libedlib_static.a [ 24%] Built target logger 41 warnings generated. [ 27%] Building CXX object vendor/spoa/CMakeFiles/spoa.dir/src/alignment_engine.cpp.o [ 30%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/gzclose.o [ 30%] Built target edlib_static clang: error: the clang compiler does not support '-march=native' --- vendor/spoa/CMakeFiles/spoa.dir/src/alignment_engine.cpp.o --- *** [vendor/spoa/CMakeFiles/spoa.dir/src/alignment_engine.cpp.o] Error code 1 bmake[2]: stopped in /Users/pbulk/build/biology/racon/work/racon-v1.4.3 1 error bmake[2]: stopped in /Users/pbulk/build/biology/racon/work/racon-v1.4.3 --- vendor/spoa/CMakeFiles/spoa.dir/all --- *** [vendor/spoa/CMakeFiles/spoa.dir/all] Error code 2 bmake[1]: stopped in /Users/pbulk/build/biology/racon/work/racon-v1.4.3 A failure has been detected in another branch of the parallel make bmake[2]: stopped in /Users/pbulk/build/biology/racon/work/racon-v1.4.3 --- vendor/thread_pool/CMakeFiles/thread_pool.dir/all --- *** [vendor/thread_pool/CMakeFiles/thread_pool.dir/all] Error code 2 bmake[1]: stopped in /Users/pbulk/build/biology/racon/work/racon-v1.4.3 /Users/pbulk/build/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzclose.c:11:13: warning: a function declaration without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] int ZEXPORT gzclose(file) ^ 1 warning generated. A failure has been detected in another branch of the parallel make bmake[2]: stopped in /Users/pbulk/build/biology/racon/work/racon-v1.4.3 --- vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/all --- *** [vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/all] Error code 2 bmake[1]: stopped in /Users/pbulk/build/biology/racon/work/racon-v1.4.3 3 errors bmake[1]: stopped in /Users/pbulk/build/biology/racon/work/racon-v1.4.3 *** [all] Error code 2 bmake: stopped in /Users/pbulk/build/biology/racon/work/racon-v1.4.3 1 error bmake: stopped in /Users/pbulk/build/biology/racon/work/racon-v1.4.3 *** Error code 2 Stop. bmake[1]: stopped in /Volumes/data/jenkins/workspace/pkgsrc-macos11-trunk-arm64/biology/racon *** Error code 1 Stop. bmake: stopped in /Volumes/data/jenkins/workspace/pkgsrc-macos11-trunk-arm64/biology/racon