=> Bootstrap dependency digest>=20211023: found digest-20220214 ===> Building for bowtie2-2.4.4nb2 clang++ -DCOMPILER_OPTIONS="\" -pipe -Os -I/opt/pkg/include/python3.10 -I/opt/pkg/include -std=c++11 -DPOPCNT_CAPABILITY -DNO_SPINLOCK -DWITH_QUEUELOCK=1\"" -pipe -Os -I/opt/pkg/include/python3.10 -I/opt/pkg/include -std=c++11 -DPOPCNT_CAPABILITY -DNO_SPINLOCK -DWITH_QUEUELOCK=1 \ -fno-strict-aliasing -DBOWTIE2_VERSION="\"`cat BOWTIE2_VERSION`\"" -DBUILD_HOST="\"${HOSTNAME:-`hostname`}\"" -DBUILD_TIME="\"`date -u`\"" -DCOMPILER_VERSION="\"`clang++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -DBOWTIE_MM -DBOWTIE2 -DNDEBUG -Wall \ -I/opt/pkg/include/python3.10 -I/opt/pkg/include -I third_party \ -o bowtie2-build-s bt2_build.cpp \ ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_locks.cpp bt2_idx.cpp bt2_io.cpp bt2_util.cpp reference.cpp ds.cpp multikey_qsort.cpp limit.cpp random_source.cpp diff_sample.cpp bowtie_build_main.cpp \ -L/opt/pkg/lib -lpthread -lz clang++ -DCOMPILER_OPTIONS="\" -pipe -Os -I/opt/pkg/include/python3.10 -I/opt/pkg/include -std=c++11 -DPOPCNT_CAPABILITY -DNO_SPINLOCK -DWITH_QUEUELOCK=1\"" -pipe -Os -I/opt/pkg/include/python3.10 -I/opt/pkg/include -std=c++11 -DPOPCNT_CAPABILITY -DNO_SPINLOCK -DWITH_QUEUELOCK=1 \ -fno-strict-aliasing -DBOWTIE2_VERSION="\"`cat BOWTIE2_VERSION`\"" -DBUILD_HOST="\"${HOSTNAME:-`hostname`}\"" -DBUILD_TIME="\"`date -u`\"" -DCOMPILER_VERSION="\"`clang++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -DBOWTIE_MM -DBOWTIE2 -DBOWTIE_64BIT_INDEX -DNDEBUG -Wall \ -I/opt/pkg/include/python3.10 -I/opt/pkg/include -I third_party \ -o bowtie2-build-l bt2_build.cpp \ ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_locks.cpp bt2_idx.cpp bt2_io.cpp bt2_util.cpp reference.cpp ds.cpp multikey_qsort.cpp limit.cpp random_source.cpp diff_sample.cpp bowtie_build_main.cpp \ -L/opt/pkg/lib -lpthread -lz clang++ -DCOMPILER_OPTIONS="\" -pipe -Os -I/opt/pkg/include/python3.10 -I/opt/pkg/include -std=c++11 -DPOPCNT_CAPABILITY -DNO_SPINLOCK -DWITH_QUEUELOCK=1\"" -pipe -Os -I/opt/pkg/include/python3.10 -I/opt/pkg/include -std=c++11 -DPOPCNT_CAPABILITY -DNO_SPINLOCK -DWITH_QUEUELOCK=1 \ -fno-strict-aliasing -DBOWTIE2_VERSION="\"`cat BOWTIE2_VERSION`\"" -DBUILD_HOST="\"${HOSTNAME:-`hostname`}\"" -DBUILD_TIME="\"`date -u`\"" -DCOMPILER_VERSION="\"`clang++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -DBOWTIE_MM -DBOWTIE2 -DNDEBUG -Wall \ -I/opt/pkg/include/python3.10 -I/opt/pkg/include -I third_party \ -o bowtie2-align-s bt2_search.cpp \ ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_locks.cpp bt2_idx.cpp bt2_io.cpp bt2_util.cpp reference.cpp ds.cpp multikey_qsort.cpp limit.cpp random_source.cpp qual.cpp pat.cpp sam.cpp read_qseq.cpp aligner_seed_policy.cpp aligner_seed.cpp aligner_seed2.cpp aligner_sw.cpp aligner_sw_driver.cpp aligner_cache.cpp aligner_result.cpp ref_coord.cpp mask.cpp pe.cpp aln_sink.cpp dp_framer.cpp scoring.cpp presets.cpp unique.cpp simple_func.cpp random_util.cpp aligner_bt.cpp sse_util.cpp aligner_swsse.cpp outq.cpp aligner_swsse_loc_i16.cpp aligner_swsse_ee_i16.cpp aligner_swsse_loc_u8.cpp aligner_swsse_ee_u8.cpp aligner_driver.cpp bowtie_main.cpp \ -L/opt/pkg/lib -lpthread -lz In file included from bt2_search.cpp:41: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: In file included from ./diff_sample.h:27: In file included from ./multikey_qsort.h:24: In file included from ./sequence_io.h:28: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from bt2_build.cpp:28: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: In file included from ./diff_sample.h:27: In file included from ./multikey_qsort.h:24: In file included from ./sequence_io.h:28: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from bt2_build.cpp:28: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: In file included from ./diff_sample.h:27: In file included from ./multikey_qsort.h:24: In file included from ./sequence_io.h:28: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from bt2_search.cpp:41: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: ./diff_sample.h:390:9: warning: variable 'amapEnts' set but not used [-Wunused-but-set-variable] size_t amapEnts = 1; ^ In file included from bt2_build.cpp:28: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: ./diff_sample.h:390:9: warning: variable 'amapEnts' set but not used [-Wunused-but-set-variable] size_t amapEnts = 1; ^ ./diff_sample.h:573:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:644:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:573:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:644:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ In file included from bt2_build.cpp:28: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: ./diff_sample.h:390:9: warning: variable 'amapEnts' set but not used [-Wunused-but-set-variable] size_t amapEnts = 1; ^ ./diff_sample.h:573:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:644:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ In file included from bt2_search.cpp:41: In file included from ./bt2_idx.h:59: In file included from ./processor_support.h:17: third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:130:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:15: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:19: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:22: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:26: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:19: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:22: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:133:15: note: use constraint modifier "w" "push{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:136:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:162:3: error: invalid output constraint '=a' in asm __cpuid (__ext, __eax, __ebx, __ecx, __edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ third_party/cpuid.h:185:3: error: invalid output constraint '=a' in asm __cpuid (__level, *__eax, *__ebx, *__ecx, *__edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ In file included from bt2_build.cpp:28: In file included from ./bt2_idx.h:59: In file included from ./processor_support.h:17: third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:130:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:15: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:19: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:22: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:26: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:19: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:22: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:133:15: note: use constraint modifier "w" "push{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:136:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:162:3: error: invalid output constraint '=a' in asm __cpuid (__ext, __eax, __ebx, __ecx, __edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ third_party/cpuid.h:185:3: error: invalid output constraint '=a' in asm __cpuid (__level, *__eax, *__ebx, *__ecx, *__edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ In file included from bt2_build.cpp:28: In file included from ./bt2_idx.h:59: In file included from ./processor_support.h:17: third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:130:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:15: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:19: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:22: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:26: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:19: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:22: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:133:15: note: use constraint modifier "w" "push{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:136:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:162:3: error: invalid output constraint '=a' in asm __cpuid (__ext, __eax, __ebx, __ecx, __edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ third_party/cpuid.h:185:3: error: invalid output constraint '=a' in asm __cpuid (__level, *__eax, *__ebx, *__ecx, *__edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ In file included from bt2_search.cpp:41: ./bt2_idx.h:2625:14: warning: variable 'patoff' set but not used [-Wunused-but-set-variable] TIndexOffU patoff = 0; ^ In file included from bt2_build.cpp:28: ./bt2_idx.h:2625:14: warning: variable 'patoff' set but not used [-Wunused-but-set-variable] TIndexOffU patoff = 0;In file included from bt2_build.cpp:28: ./bt2_idx.h:2625 ^ :14: warning: variable 'patoff' set but not used [-Wunused-but-set-variable] TIndexOffU patoff = 0; ^ In file included from bt2_search.cpp:53: In file included from ./aligner_driver.h:78: ./aligner_seed2.h:1264:10: warning: variable 'nuninited' set but not used [-Wunused-but-set-variable] size_t nuninited = 0; ^ ./aligner_seed2.h:2448:10: warning: variable 'ns' set but not used [-Wunused-but-set-variable] size_t ns = 0, ngap = 0, nrefn = 0; ^ ./aligner_seed2.h:2448:18: warning: variable 'ngap' set but not used [-Wunused-but-set-variable] size_t ns = 0, ngap = 0, nrefn = 0; ^ ./aligner_seed2.h:2448:28: warning: variable 'nrefn' set but not used [-Wunused-but-set-variable] size_t ns = 0, ngap = 0, nrefn = 0; ^ In file included from bt2_search.cpp:54: In file included from ./aligner_sw.h:73: ./sse_wrap.h:31:10: fatal error: 'simde/x86/sse2.h' file not found #include "simde/x86/sse2.h" ^~~~~~~~~~~~~~~~~~ 18 warnings and 3 errors generated. 14 warnings and 2 errors generated. 14 warnings and 2 errors generated. In file included from ref_read.cpp:20: In file included from ./ref_read.h:33: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from ref_read.cpp:20: In file included from ./ref_read.h:33: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from ref_read.cpp:20: In file included from ./ref_read.h:33: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from edit.cpp:21: In file included from ./edit.h:29: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from edit.cpp:21: In file included from ./edit.h:29: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from edit.cpp:21: In file included from ./edit.h:29: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from bt2_idx.cpp:25: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: In file included from ./diff_sample.h:27: In file included from ./multikey_qsort.h:24: In file included from ./sequence_io.h:28: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from bt2_idx.cpp:25: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: In file included from ./diff_sample.h:27: In file included from ./multikey_qsort.h:24: In file included from ./sequence_io.h:28: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from bt2_idx.cpp:25: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: In file included from ./diff_sample.h:27: In file included from ./multikey_qsort.h:24: In file included from ./sequence_io.h:28: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from bt2_idx.cpp:25: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: ./diff_sample.h:390:9:In file included from bt2_idx.cpp warning: :25: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:variable 'amapEnts' set but not used [-Wunused-but-set-variable] 31: ./diff_sample.h:390 size_t amapEnts = 1; :9 ^ : warning: variable 'amapEnts' set but not used [-Wunused-but-set-variable] size_t amapEnts = 1; ^ In file included from bt2_idx.cpp:25: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: ./diff_sample.h:390:9: warning: variable 'amapEnts' set but not used [-Wunused-but-set-variable] size_t amapEnts = 1; ^ ./diff_sample.h:573:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:573:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:573:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:644:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:644:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:644:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ In file included from bt2_idx.cpp:25: In file included from ./bt2_idx.h:59: In file included from ./processor_support.h:17: third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] In file included from bt2_idx.cpp:25: In file included from ./bt2_idx.h : "=&r" (__eax), "=&r" (__ebx):59: ^In file included from ./processor_support.h:17: third_party/cpuid.h :138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:130:14third_party/cpuid.h:130: :14: note: note: use constraint modifier "w" use constraint modifier "w" "pop{l}\t%0\n\t" ^~ "pop{l}\t%0\n\t" ^~ %w0 %w0third_party/cpuid.h:138:14 In file included from bt2_idx.cpp:: 25warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : : "=&r" (__eax), "=&r" (__ebx)In file included from ./bt2_idx.h:59: In file included from ./processor_support.h ^:17: third_party/cpuid.h third_party/cpuid.h::138:138:14: 14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] third_party/cpuid.hwarning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ : : "=&r" (__eax), "=&r" (__ebx) 131:15: note: ^ use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:15: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] third_party/cpuid.h: : "=&r" (__eax), "=&r" (__ebx) ^ 130:14: note: use constraint modifier "w" third_party/cpuid.h "pop{l}\t%0\n\t" ^~:131 : %w0 19: note: third_party/cpuid.h:138:use constraint modifier "w" third_party/cpuid.h:14 "mov{l}\t{%0, %1|%1, %0}\n\t": warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] ^~ %w1 131:third_party/cpuid.h19: : : "=&r" (__eax), "=&r" (__ebx)note: use constraint modifier "w" 138:29: "mov{l}\t{%0, %1|%1, %0}\n\t" ^~warning: ^ value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] %w1 : "=&r" (__eax), "=&r" (__ebx)third_party/cpuid.hthird_party/cpuid.h:138: :29131: ^ :15 warning: : value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] note: use constraint modifier "w" : "=&r" (__eax), "=&r" (__ebx) ^ "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:131:22: third_party/cpuid.h:note: use constraint modifier "w" 138 "mov{l}\t{%0, %1|%1, %0}\n\t" third_party/cpuid.h:131:22: : ^~29 note: use constraint modifier "w" %w1 "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 :third_party/cpuid.hthird_party/cpuid.h: :138:warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] 14138 : "=&r" (__eax), "=&r" (__ebx) : warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] ^ : : "=&r" (__eax), "=&r" (__ebx) ^ 14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] third_party/cpuid.h:131: : "=&r" (__eax), "=&r" (__ebx) ^ 19: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:131:26: note: use constraint modifier "w"third_party/cpuid.h: third_party/cpuid.h "mov{l}\t{%0, %1|%1, %0}\n\t" ^~:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] 131: : "=&r" (__eax), "=&r" (__ebx) %w026 : ^ third_party/cpuid.hthird_party/cpuid.h:131:22: note: :138 note: use constraint modifier "w" :14 "mov{l}\t{%0, %1|%1, %0}\n\t"use constraint modifier "w" : ^~ %w0 "mov{l}\t{%0, %1|%1, %0}\n\t"third_party/cpuid.h:138:14 ^~warning: :value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] warning: %w1 : "=&r" (__eax), "=&r" (__ebx)third_party/cpuid.hvalue size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : ^138: : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:19: note: use constraint modifier "w" third_party/cpuid.h "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 :132third_party/cpuid.h14:::19138 ::warning: 14value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths]note: : use constraint modifier "w" : "=&r" (__eax), "=&r" (__ebx) "xor{l}\t{%2, %0|%0, %2}\n\t" ^ warning: ^~ %w0 third_party/cpuid.h:138:14:value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] third_party/cpuid.h:131:warning: 26: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) note: use constraint modifier "w" ^ : "=&r" (__eax), "=&r" (__ebx) ^ "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ third_party/cpuid.h:132: %w0 22: third_party/cpuid.h:note: use constraint modifier "w"138: third_party/cpuid.h "xor{l}\t{%2, %0|%0, %2}\n\t" ^~14: :132:22warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] %w0 : "=&r" (__eax), "=&r" (__ebx)third_party/cpuid.h ::138:14 ^: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx)third_party/cpuid.h:note: use constraint modifier "w" 132 "xor{l}\t{%2, %0|%0, %2}\n\t" : ^~ %w0 19 ^ :third_party/cpuid.h note: :138use constraint modifier "w" third_party/cpuid.h "xor{l}\t{%2, %0|%0, %2}\n\t": ^~ %w0 14third_party/cpuid.h:138::: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] 14133:15: : "=&r" (__eax), "=&r" (__ebx) note: : use constraint modifier "w" ^ "push{l}\t%0\n\t" ^~warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] %w0 third_party/cpuid.h: : "=&r" (__eax), "=&r" (__ebx) ^ 133:15third_party/cpuid.h:: 138:note: use constraint modifier "w"14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] "push{l}\t%0\n\t" ^~ : "=&r" (__eax), "=&r" (__ebx) %w0 ^third_party/cpuid.h:138 :14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:136:14: note: third_party/cpuid.h:132third_party/cpuid.h:136:14:22: use constraint modifier "w": note: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~use constraint modifier "w" "pop{l}\t%0\n\t" %w0 ^~ %w0 third_party/cpuid.h: "pop{l}\t%0\n\t" 138: ^~ %w0 14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:162:3: error: invalid output constraint '=a' in asm third_party/cpuid.h:133third_party/cpuid.h:162: __cpuid (__ext, __eax, __ebx, __ecx, __edx);15: note: use constraint modifier "w" "push{l}\t%0\n\t": 3 ^~ %w0: error: invalid output constraint '=a' in asm ^ __cpuid (__ext, __eax, __ebx, __ecx, __edx);third_party/cpuid.h: ^ 138third_party/cpuid.h::104third_party/cpuid.h:104:147: note: expanded from macro '__cpuid': :7 warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : : "=&r" (__eax), "=&r" (__ebx) note: expanded from macro '__cpuid' ^ : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ third_party/cpuid.h:136:14: ^ note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:162:3: error: invalid output constraint '=a' in asm __cpuid (__ext, __eax, __ebx, __ecx, __edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' third_party/cpuid.h:185 : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^:3 : error: invalid output constraint '=a' in asm __cpuid (__level, *__eax, *__ebx, *__ecx, *__edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ third_party/cpuid.hthird_party/cpuid.h:185:185:3:: error: invalid output constraint '=a' in asm __cpuid (__level, *__eax, *__ebx, *__ecx, *__edx); ^3: error: invalid output constraint '=a' in asm third_party/cpuid.h:104:7: __cpuid (__level, *__eax, *__ebx, *__ecx, *__edx); note: expanded from macro '__cpuid' ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ In file included from bt2_idx.cpp:25: ./bt2_idx.h:2625:14: warning: variable 'patoff' set but not used [-Wunused-but-set-variable] TIndexOffU patoff = 0; ^ In file included from bt2_idx.cpp:25: ./bt2_idx.h:2625:14: warning: variable 'patoff' set but not used [-Wunused-but-set-variable] TIndexOffU patoff = 0; ^ In file included from bt2_idx.cpp:25: ./bt2_idx.h:2625:14: warning: variable 'patoff' set but not used [-Wunused-but-set-variable] TIndexOffU patoff = 0; ^ 14 warnings and 2 errors generated. 14 warnings and 2 errors generated. 14 warnings and 2 errors generated. In file included from bt2_io.cpp:25: In file included from ./bt2_idx.h:42: In file included from In file included from bt2_io.cpp:25: ./blockwise_sa.h:31: In file included from In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: In file included from ./diff_sample.h:27: In file included from ./multikey_qsort.h:24./diff_sample.h: In file included from ./sequence_io.h:28: :27./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] : In file included from ./multikey_qsort.h: int thru = 0; 24: In file included from ^./sequence_io.h: 28: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from bt2_io.cpp:25: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: In file included from ./diff_sample.h:27: In file included from ./multikey_qsort.h:24: In file included from ./sequence_io.h:28: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from bt2_io.cpp:25: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: ./diff_sample.h:390:9: warning: variable 'amapEnts' set but not used [-Wunused-but-set-variable] size_t amapEnts = 1; ^ In file included from bt2_io.cpp:25: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: ./diff_sample.h:390:9: warning: variable 'amapEnts' set but not used [-Wunused-but-set-variable] size_t amapEnts = 1; ^ In file included from bt2_io.cpp:25: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: ./diff_sample.h:390:9: warning: variable 'amapEnts' set but not used [-Wunused-but-set-variable] size_t amapEnts = 1; ^ ./diff_sample.h:573:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:573:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:644:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:644:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:573:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:644:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ In file included from bt2_io.cpp:25: In file included from ./bt2_idx.h:59: In file included from ./processor_support.h:17: third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:130:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:15: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:19: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.hIn file included from bt2_io.cpp:25: In file included from ./bt2_idx.h:59: In file included from ./processor_support.h:17: third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] :131:22: note: : "=&r" (__eax), "=&r" (__ebx) ^ use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:26: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:130:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.hthird_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ :132:19: note: use constraint modifier "w" third_party/cpuid.h:131:15: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.hthird_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ :138:third_party/cpuid.h:131:19: note: 14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] use constraint modifier "w" : "=&r" (__eax), "=&r" (__ebx) ^ "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:22: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:132:22: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:138third_party/cpuid.h:133:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ :15: note: use constraint modifier "w" "push{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:26: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:19: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx)third_party/cpuid.h ^ :third_party/cpuid.h:132:22: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:136:14: note: use constraint modifier "w" 138:14 "pop{l}\t%0\n\t" ^~ : %w0 warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:133:15: note: use constraint modifier "w" "push{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:136:14:third_party/cpuid.h:162:3: error: invalid output constraint '=a' in asm __cpuid (__ext, __eax, __ebx, __ecx, __edx); ^ note: use constraint modifier "w" "pop{l}\t%0\n\t"third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' ^~ %w0 : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ third_party/cpuid.h:162:3: error: invalid output constraint '=a' in asm __cpuid (__ext, __eax, __ebx, __ecx, __edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ third_party/cpuid.h:185:3: error: invalid output constraint '=a' in asm __cpuid (__level, *__eax, *__ebx, *__ecx, *__edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ third_party/cpuid.h:185:3: error: invalid output constraint '=a' in asm __cpuid (__level, *__eax, *__ebx, *__ecx, *__edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ In file included from bt2_io.cpp:25: In file included from ./bt2_idx.h:59: In file included from ./processor_support.h:17: third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:130:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:15: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:19: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:22: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:26: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:19: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:22: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:133:15: note: use constraint modifier "w" "push{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:136:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:162:3: error: invalid output constraint '=a' in asm __cpuid (__ext, __eax, __ebx, __ecx, __edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ third_party/cpuid.h:185:3: error: invalid output constraint '=a' in asm __cpuid (__level, *__eax, *__ebx, *__ecx, *__edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ In file included from bt2_io.cpp:25: ./bt2_idx.h:2625:14: warning: variable 'patoff' set but not used [-Wunused-but-set-variable] TIndexOffU patoff = 0; ^ In file included from bt2_io.cpp:25: ./bt2_idx.h:2625:14: warning: variable 'patoff' set but not used [-Wunused-but-set-variable] TIndexOffU patoff = 0; ^ In file included from bt2_io.cpp:25: ./bt2_idx.h:2625:14: warning: variable 'patoff' set but not used [-Wunused-but-set-variable] TIndexOffU patoff = 0; ^ 14 warnings and 2 errors generated. 14 warnings and 2 errors generated. 14 warnings and 2 errors generated. In file included from bt2_util.cpp:26: In file included from In file included from bt2_util.cpp:26: In file included from ./bt2_idx.h:42: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: In file included from ./diff_sample.h:27: In file included from ./blockwise_sa.h:31: In file included from ./multikey_qsort.h:24: In file included from ./sequence_io.h:28: ./ds.h:4078./diff_sample.h:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ :27: In file included from ./multikey_qsort.h:24: In file included from ./sequence_io.h:28: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from bt2_util.cpp:26: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: In file included from ./diff_sample.h:27: In file included from ./multikey_qsort.h:24: In file included from ./sequence_io.h:28: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from bt2_util.cpp:26: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: ./diff_sample.h:390:9: warning: variable 'amapEnts' set but not used [-Wunused-but-set-variable] size_t amapEnts = 1; ^ In file included from bt2_util.cpp:26: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: ./diff_sample.h:390:9: warning: variable 'amapEnts' set but not used [-Wunused-but-set-variable] size_t amapEnts = 1; ^ In file included from bt2_util.cpp:26: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: ./diff_sample.h:390:9: warning: variable 'amapEnts' set but not used [-Wunused-but-set-variable] size_t amapEnts = 1; ^ ./diff_sample.h:573:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:644:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:573:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:644:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:573:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:644:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ In file included from bt2_util.cpp:26: In file included from ./bt2_idx.h:59: In file included from ./processor_support.h:17: third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:130:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:15: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:19: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:22: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:26: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:19: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:22: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:133:15: note: use constraint modifier "w" "push{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:136:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:162:3: error: invalid output constraint '=a' in asm __cpuid (__ext, __eax, __ebx, __ecx, __edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ third_party/cpuid.h:185:In file included from bt2_util.cpp:26: In file included from ./bt2_idx.h:59: In file included from ./processor_support.h:17: third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ 3: error: invalid output constraint '=a' in asm __cpuid (__level, *__eax, *__ebx, *__ecx, *__edx); ^ third_party/cpuid.h:104:7third_party/cpuid.h:130:14: note: use constraint modifier "w" : "pop{l}\t%0\n\t" note: expanded from macro '__cpuid' ^~ %w0 : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:15: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:19: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:22: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:26: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:19: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:22: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:133:15: note: use constraint modifier "w" "push{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:136:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:162:3: error: invalid output constraint '=a' in asm __cpuid (__ext, __eax, __ebx, __ecx, __edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ third_party/cpuid.h:185:3: error: invalid output constraint '=a' in asm __cpuid (__level, *__eax, *__ebx, *__ecx, *__edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ In file included from bt2_util.cpp:26: In file included from ./bt2_idx.h:59: In file included from ./processor_support.h:17: third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:130:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:15: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:19: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:22: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:26: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:19: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:22: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:133:15: note: use constraint modifier "w" "push{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:136:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:162:3: error: invalid output constraint '=a' in asm __cpuid (__ext, __eax, __ebx, __ecx, __edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ third_party/cpuid.h:185:3: error: invalid output constraint '=a' in asm __cpuid (__level, *__eax, *__ebx, *__ecx, *__edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ In file included from bt2_util.cpp:26: ./bt2_idx.h:2625:14: warning: variable 'patoff' set but not used [-Wunused-but-set-variable] TIndexOffU patoff = 0; ^ In file included from bt2_util.cpp:26: ./bt2_idx.h:2625:14: warning: variable 'patoff' set but not used [-Wunused-but-set-variable] TIndexOffU patoff = 0; ^ In file included from bt2_util.cpp:26: ./bt2_idx.h:2625:14: warning: variable 'patoff' set but not used [-Wunused-but-set-variable] TIndexOffU patoff = 0; ^ bt2_util.cpp:175:13: warning: variable 'restOff' set but not used [-Wunused-but-set-variable] TIndexOffU restOff = 0; ^ bt2_util.cpp:175:13: warning: variable 'restOff' set but not used [-Wunused-but-set-variable] TIndexOffU restOff = 0; ^ bt2_util.cpp:175:13: warning: variable 'restOff' set but not used [-Wunused-but-set-variable] TIndexOffU restOff = 0; ^ 15 warnings and 2 errors generated. 15 warnings and 2 errors generated. 15 warnings and 2 errors generated. In file included from reference.cpp:22: In file included from ./reference.h:32: In file included from ./ref_read.h:33: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from reference.cpp:22: In file included from ./reference.h:32: In file included from ./ref_read.h:33: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from reference.cpp:22: In file included from ./reference.h:32: In file included from ./ref_read.h:33: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from ds.cpp:20: ./ds.hIn file included from ds.cpp:20: :./ds.h:4078:8: 4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ int thru = 0; ^ In file included from ds.cpp:20: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from multikey_qsort.cpp:20: In file included from ./multikey_qsort.h:24: In file included from ./sequence_io.h:28: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from multikey_qsort.cpp:20: In file included from ./multikey_qsort.h:24: In file included from ./sequence_io.h:28: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from multikey_qsort.cpp:20: In file included from ./multikey_qsort.h:24: In file included from ./sequence_io.h:28: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from multikey_qsort.cpp:20: In file included from ./multikey_qsort.h:27: ./diff_sample.h:390:9: warning: variable 'amapEnts' set but not used [-Wunused-but-set-variable] In file included from size_t amapEnts = 1;multikey_qsort.cpp:20: In file included from ./multikey_qsort.h:27: ./diff_sample.h ^ :390:9: warning: variable 'amapEnts' set but not used [-Wunused-but-set-variable] size_t amapEnts = 1; ^ ./diff_sample.h:573:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:573:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:644:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:644:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ In file included from multikey_qsort.cpp:20: In file included from ./multikey_qsort.h:27: ./diff_sample.h:390:9: warning: variable 'amapEnts' set but not used [-Wunused-but-set-variable] size_t amapEnts = 1; ^ ./diff_sample.h:573:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:644:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ 4 warnings generated. 4 warnings generated. 4 warnings generated. In file included from random_source.cpp:21: In file included from ./random_util.h:25: In file included from ./ds.h:4078:8: warning: random_source.cppvariable 'thru' set but not used [-Wunused-but-set-variable] :21: In file included from ./random_util.h:25 int thru = 0; ^ : ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from random_source.cpp:21: In file included from ./random_util.h:25: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from diff_sample.cpp:20: In file included from ./diff_sample.h:27: In file included from ./multikey_qsort.h:24: In file included from ./sequence_io.h:28: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from diff_sample.cpp:20: In file included from ./diff_sample.h:27: In file included from ./multikey_qsort.h:24: In file included from ./sequence_io.h:28: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from pat.cpp:30: In file included from ./pat.h:39: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from diff_sample.cpp:20: ./diff_sample.h:390:9: warning: variable 'amapEnts' set but not used [-Wunused-but-set-variable] size_t amapEnts = 1; ^ ./diff_sample.h:573:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:644:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ In file included from diff_sample.cpp:20: ./diff_sample.h:390:9: warning: variable 'amapEnts' set but not used [-Wunused-but-set-variable] size_t amapEnts = 1; ^ ./diff_sample.h:573:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:644:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ 4 warnings generated. 4 warnings generated. In file included from bowtie_build_main.cpp:25: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from bowtie_build_main.cpp:25: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. gmake: *** [Makefile:307: bowtie2-build-s] Error 1 gmake: *** Waiting for unfinished jobs.... gmake: *** [Makefile:315: bowtie2-build-l] Error 1 In file included from sam.cpp:22: In file included from ./sam.h:24: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ 1 warning generated. In file included from read_qseq.cpp:20: In file included from ./pat.h:39: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ 1 warning generated. In file included from aligner_seed_policy.cpp:24: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ 1 warning generated. In file included from aligner_seed.cpp:20: In file included from ./aligner_cache.h:59: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from aligner_seed.cpp:23: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: ./diff_sample.h:390:9: warning: variable 'amapEnts' set but not used [-Wunused-but-set-variable] size_t amapEnts = 1; ^ ./diff_sample.h:573:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:644:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ In file included from aligner_seed.cpp:23: In file included from ./bt2_idx.h:59: In file included from ./processor_support.h:17: third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:130:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:15: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:19: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:22: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:26: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:19: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:22: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:133:15: note: use constraint modifier "w" "push{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:136:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:162:3: error: invalid output constraint '=a' in asm __cpuid (__ext, __eax, __ebx, __ecx, __edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ third_party/cpuid.h:185:3: error: invalid output constraint '=a' in asm __cpuid (__level, *__eax, *__ebx, *__ecx, *__edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ In file included from aligner_seed.cpp:23: ./bt2_idx.h:2625:14: warning: variable 'patoff' set but not used [-Wunused-but-set-variable] TIndexOffU patoff = 0; ^ 14 warnings and 2 errors generated. In file included from aligner_seed2.cpp:22: In file included from ./aligner_seed2.h:101: In file included from ./random_util.h:25: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from aligner_seed2.cpp:22: In file included from ./aligner_seed2.h:103: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: ./diff_sample.h:390:9: warning: variable 'amapEnts' set but not used [-Wunused-but-set-variable] size_t amapEnts = 1; ^ ./diff_sample.h:573:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:644:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ In file included from aligner_seed2.cpp:22: In file included from ./aligner_seed2.h:103: In file included from ./bt2_idx.h:59: In file included from ./processor_support.h:17: third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:130:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:15: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:19: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:22: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:26: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:19: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:22: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:133:15: note: use constraint modifier "w" "push{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:136:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:162:3: error: invalid output constraint '=a' in asm __cpuid (__ext, __eax, __ebx, __ecx, __edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ third_party/cpuid.h:185:3: error: invalid output constraint '=a' in asm __cpuid (__level, *__eax, *__ebx, *__ecx, *__edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ In file included from aligner_seed2.cpp:22: In file included from ./aligner_seed2.h:103: ./bt2_idx.h:2625:14: warning: variable 'patoff' set but not used [-Wunused-but-set-variable] TIndexOffU patoff = 0; ^ In file included from aligner_seed2.cpp:22: ./aligner_seed2.h:1264:10: warning: variable 'nuninited' set but not used [-Wunused-but-set-variable] size_t nuninited = 0; ^ ./aligner_seed2.h:2448:10: warning: variable 'ns' set but not used [-Wunused-but-set-variable] size_t ns = 0, ngap = 0, nrefn = 0; ^ ./aligner_seed2.h:2448:18: warning: variable 'ngap' set but not used [-Wunused-but-set-variable] size_t ns = 0, ngap = 0, nrefn = 0; ^ ./aligner_seed2.h:2448:28: warning: variable 'nrefn' set but not used [-Wunused-but-set-variable] size_t ns = 0, ngap = 0, nrefn = 0; ^ aligner_seed2.cpp:1646:11: warning: variable 'nopts' set but not used [-Wunused-but-set-variable] size_t nopts = 0; ^ aligner_seed2.cpp:1383:9: warning: variable 'off3p' set but not used [-Wunused-but-set-variable] size_t off3p = q.length() - off5p - 1; ^ aligner_seed2.cpp:1390:9: warning: variable 'nalloc' set but not used [-Wunused-but-set-variable] size_t nalloc = 0; ^ 21 warnings and 2 errors generated. In file included from aligner_sw.cpp:25: In file included from ./aligner_sw.h:73: ./sse_wrap.h:31:10: fatal error: 'simde/x86/sse2.h' file not found #include "simde/x86/sse2.h" ^~~~~~~~~~~~~~~~~~ 1 error generated. In file included from aligner_sw_driver.cpp:46: In file included from ./aligner_cache.h:59: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from aligner_sw_driver.cpp:47: In file included from ./aligner_sw_driver.h:81: In file included from ./aligner_sw.h:73: ./sse_wrap.h:31:10: fatal error: 'simde/x86/sse2.h' file not found #include "simde/x86/sse2.h" ^~~~~~~~~~~~~~~~~~ 1 warning and 1 error generated. In file included from aligner_cache.cpp:22: In file included from ./aligner_cache.h:59: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ 1 warning generated. In file included from aligner_result.cpp:21: In file included from ./reference.h:32: In file included from ./ref_read.h:33: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ 1 warning generated. In file included from aln_sink.cpp:22: In file included from ./aln_sink.h:24: In file included from ./read.h:25: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ 1 warning generated. In file included from dp_framer.cpp:20: In file included from ./dp_framer.h:51: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ 1 warning generated. In file included from presets.cpp:21: In file included from ./presets.h:32: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ 1 warning generated. In file included from unique.cpp:20: In file included from ./unique.h:39: In file included from ./aligner_result.h:27: In file included from ./read.h:25: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ 1 warning generated. In file included from simple_func.cpp:22: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ 1 warning generated. In file included from random_util.cpp:20: In file included from ./random_util.h:25: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ 1 warning generated. In file included from aligner_bt.cpp:20: In file included from ./aligner_bt.h:25: In file included from ./aligner_sw_common.h:23: In file included from ./aligner_result.h:27: In file included from ./read.h:25: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from aligner_bt.cpp:20: In file included from ./aligner_bt.h:31: In file included from ./sse_util.h:27: ./sse_wrap.h:31:10: fatal error: 'simde/x86/sse2.h' file not found #include "simde/x86/sse2.h" ^~~~~~~~~~~~~~~~~~ 1 warning and 1 error generated. In file included from sse_util.cpp:20: In file included from ./sse_util.h:24: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from sse_util.cpp:20: In file included from ./sse_util.h:27: ./sse_wrap.h:31:10: fatal error: 'simde/x86/sse2.h' file not found #include "simde/x86/sse2.h" ^~~~~~~~~~~~~~~~~~ 1 warning and 1 error generated. In file included from aligner_swsse.cpp:21: In file included from ./aligner_sw_common.h:23: In file included from ./aligner_result.h:27: In file included from ./read.h:25: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from aligner_swsse.cpp:22: In file included from ./aligner_swsse.h:28: In file included from ./sse_util.h:27: ./sse_wrap.h:31:10: fatal error: 'simde/x86/sse2.h' file not found #include "simde/x86/sse2.h" ^~~~~~~~~~~~~~~~~~ 1 warning and 1 error generated. In file included from outq.cpp:22: In file included from ./outq.h:24: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ 1 warning generated. In file included from aligner_swsse_loc_i16.cpp:56: In file included from ./aligner_sw.h:73: ./sse_wrap.h:31:10: fatal error: 'simde/x86/sse2.h' file not found #include "simde/x86/sse2.h" ^~~~~~~~~~~~~~~~~~ 1 error generated. In file included from aligner_swsse_ee_i16.cpp:56: In file included from ./aligner_sw.h:73: ./sse_wrap.h:31:10: fatal error: 'simde/x86/sse2.h' file not found #include "simde/x86/sse2.h" ^~~~~~~~~~~~~~~~~~ 1 error generated. In file included from aligner_swsse_loc_u8.cpp:56: In file included from ./aligner_sw.h:73: ./sse_wrap.h:31:10: fatal error: 'simde/x86/sse2.h' file not found #include "simde/x86/sse2.h" ^~~~~~~~~~~~~~~~~~ 1 error generated. In file included from aligner_swsse_ee_u8.cpp:56: In file included from ./aligner_sw.h:73: ./sse_wrap.h:31:10: fatal error: 'simde/x86/sse2.h' file not found #include "simde/x86/sse2.h" ^~~~~~~~~~~~~~~~~~ 1 error generated. In file included from aligner_driver.cpp:20: In file included from ./aligner_driver.h:78: In file included from ./aligner_seed2.h:101: In file included from ./random_util.h:25: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from aligner_driver.cpp:20: In file included from ./aligner_driver.h:78: In file included from ./aligner_seed2.h:103: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: ./diff_sample.h:390:9: warning: variable 'amapEnts' set but not used [-Wunused-but-set-variable] size_t amapEnts = 1; ^ ./diff_sample.h:573:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:644:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ In file included from aligner_driver.cpp:20: In file included from ./aligner_driver.h:78: In file included from ./aligner_seed2.h:103: In file included from ./bt2_idx.h:59: In file included from ./processor_support.h:17: third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:130:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:15: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:19: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:22: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:26: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:19: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:22: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:133:15: note: use constraint modifier "w" "push{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:136:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:162:3: error: invalid output constraint '=a' in asm __cpuid (__ext, __eax, __ebx, __ecx, __edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ third_party/cpuid.h:185:3: error: invalid output constraint '=a' in asm __cpuid (__level, *__eax, *__ebx, *__ecx, *__edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ In file included from aligner_driver.cpp:20: In file included from ./aligner_driver.h:78: In file included from ./aligner_seed2.h:103: ./bt2_idx.h:2625:14: warning: variable 'patoff' set but not used [-Wunused-but-set-variable] TIndexOffU patoff = 0; ^ In file included from aligner_driver.cpp:20: In file included from ./aligner_driver.h:78: ./aligner_seed2.h:1264:10: warning: variable 'nuninited' set but not used [-Wunused-but-set-variable] size_t nuninited = 0; ^ ./aligner_seed2.h:2448:10: warning: variable 'ns' set but not used [-Wunused-but-set-variable] size_t ns = 0, ngap = 0, nrefn = 0; ^ ./aligner_seed2.h:2448:18: warning: variable 'ngap' set but not used [-Wunused-but-set-variable] size_t ns = 0, ngap = 0, nrefn = 0; ^ ./aligner_seed2.h:2448:28: warning: variable 'nrefn' set but not used [-Wunused-but-set-variable] size_t ns = 0, ngap = 0, nrefn = 0; ^ 18 warnings and 2 errors generated. In file included from bowtie_main.cpp:25: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ 1 warning generated. gmake: *** [Makefile:343: bowtie2-align-s] Error 1 *** Error code 2 Stop. bmake[1]: stopped in /Volumes/data/jenkins/workspace/pkgsrc-macos11-trunk-arm64/biology/bowtie2 *** Error code 1 Stop. bmake: stopped in /Volumes/data/jenkins/workspace/pkgsrc-macos11-trunk-arm64/biology/bowtie2