=> Bootstrap dependency digest>=20211023: found digest-20220214 ===> Building for bowtie2-2.4.4nb2 clang++ -DCOMPILER_OPTIONS="\" -pipe -Os -I/opt/pkg/include/python3.10 -I/opt/pkg/include -std=c++11 -DPOPCNT_CAPABILITY -DNO_SPINLOCK -DWITH_QUEUELOCK=1\"" -pipe -Os -I/opt/pkg/include/python3.10 -I/opt/pkg/include -std=c++11 -DPOPCNT_CAPABILITY -DNO_SPINLOCK -DWITH_QUEUELOCK=1 \ -fno-strict-aliasing -DBOWTIE2_VERSION="\"`cat BOWTIE2_VERSION`\"" -DBUILD_HOST="\"${HOSTNAME:-`hostname`}\"" -DBUILD_TIME="\"`date -u`\"" -DCOMPILER_VERSION="\"`clang++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -DBOWTIE_MM -DBOWTIE2 -DNDEBUG -Wall \ -I/opt/pkg/include/python3.10 -I/opt/pkg/include -I third_party \ -o bowtie2-build-s bt2_build.cpp \ ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_locks.cpp bt2_idx.cpp bt2_io.cpp bt2_util.cpp reference.cpp ds.cpp multikey_qsort.cpp limit.cpp random_source.cpp diff_sample.cpp bowtie_build_main.cpp \ -L/opt/pkg/lib -lpthread -lz clang++ -DCOMPILER_OPTIONS="\" -pipe -Os -I/opt/pkg/include/python3.10 -I/opt/pkg/include -std=c++11 -DPOPCNT_CAPABILITY -DNO_SPINLOCK -DWITH_QUEUELOCK=1\"" -pipe -Os -I/opt/pkg/include/python3.10 -I/opt/pkg/include -std=c++11 -DPOPCNT_CAPABILITY -DNO_SPINLOCK -DWITH_QUEUELOCK=1 \ -fno-strict-aliasing -DBOWTIE2_VERSION="\"`cat BOWTIE2_VERSION`\"" -DBUILD_HOST="\"${HOSTNAME:-`hostname`}\"" -DBUILD_TIME="\"`date -u`\"" -DCOMPILER_VERSION="\"`clang++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -DBOWTIE_MM -DBOWTIE2 -DBOWTIE_64BIT_INDEX -DNDEBUG -Wall \ -I/opt/pkg/include/python3.10 -I/opt/pkg/include -I third_party \ -o bowtie2-build-l bt2_build.cpp \ ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_locks.cpp bt2_idx.cpp bt2_io.cpp bt2_util.cpp reference.cpp ds.cpp multikey_qsort.cpp limit.cpp random_source.cpp diff_sample.cpp bowtie_build_main.cpp \ -L/opt/pkg/lib -lpthread -lz clang++ -DCOMPILER_OPTIONS="\" -pipe -Os -I/opt/pkg/include/python3.10 -I/opt/pkg/include -std=c++11 -DPOPCNT_CAPABILITY -DNO_SPINLOCK -DWITH_QUEUELOCK=1\"" -pipe -Os -I/opt/pkg/include/python3.10 -I/opt/pkg/include -std=c++11 -DPOPCNT_CAPABILITY -DNO_SPINLOCK -DWITH_QUEUELOCK=1 \ -fno-strict-aliasing -DBOWTIE2_VERSION="\"`cat BOWTIE2_VERSION`\"" -DBUILD_HOST="\"${HOSTNAME:-`hostname`}\"" -DBUILD_TIME="\"`date -u`\"" -DCOMPILER_VERSION="\"`clang++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -DBOWTIE_MM -DBOWTIE2 -DNDEBUG -Wall \ -I/opt/pkg/include/python3.10 -I/opt/pkg/include -I third_party \ -o bowtie2-align-s bt2_search.cpp \ ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_locks.cpp bt2_idx.cpp bt2_io.cpp bt2_util.cpp reference.cpp ds.cpp multikey_qsort.cpp limit.cpp random_source.cpp qual.cpp pat.cpp sam.cpp read_qseq.cpp aligner_seed_policy.cpp aligner_seed.cpp aligner_seed2.cpp aligner_sw.cpp aligner_sw_driver.cpp aligner_cache.cpp aligner_result.cpp ref_coord.cpp mask.cpp pe.cpp aln_sink.cpp dp_framer.cpp scoring.cpp presets.cpp unique.cpp simple_func.cpp random_util.cpp aligner_bt.cpp sse_util.cpp aligner_swsse.cpp outq.cpp aligner_swsse_loc_i16.cpp aligner_swsse_ee_i16.cpp aligner_swsse_loc_u8.cpp aligner_swsse_ee_u8.cpp aligner_driver.cpp bowtie_main.cpp \ -L/opt/pkg/lib -lpthread -lz In file included from bt2_build.cpp:28: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: In file included from ./diff_sample.h:27: In file included from ./multikey_qsort.h:24: In file included from ./sequence_io.h:28: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] In file included from bt2_search.cpp:41: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: In file included from ./diff_sample.h:27: In file included from ./multikey_qsort.h:24: In file included from ./sequence_io.h:28: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ int thru = 0; ^ In file included from bt2_build.cpp:28: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: In file included from ./diff_sample.h:27: In file included from ./multikey_qsort.h:24: In file included from ./sequence_io.h:28: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from bt2_build.cpp:28: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: ./diff_sample.h:390:9: warning: variable 'amapEnts' set but not used [-Wunused-but-set-variable] size_t amapEnts = 1; ^ In file included from bt2_search.cpp:41: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: ./diff_sample.h:390:9: warning: variable 'amapEnts' set but not used [-Wunused-but-set-variable] size_t amapEnts = 1; ^ In file included from bt2_build.cpp:28: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: ./diff_sample.h:390:9: warning: variable 'amapEnts' set but not used [-Wunused-but-set-variable] size_t amapEnts = 1; ^ ./diff_sample.h:573:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:644:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:573:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:573:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^./diff_sample.h:644:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:644:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ In file included from bt2_build.cppIn file included from bt2_build.cpp:28:28: : In file included from ./bt2_idx.h:In file included from ./bt2_idx.h:5959: : In file included from In file included from ./processor_support.h./processor_support.h:17: :17third_party/cpuid.h:: third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths]138 :14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ : "=&r" (__eax), "=&r" (__ebx) ^ In file included from bt2_search.cpp:41: In file included from ./bt2_idx.h:59: In file included from ./processor_support.h:17: third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.hthird_party/cpuid.h:130:14: third_party/cpuid.h::130:14: 130:14: note: note: use constraint modifier "w" use constraint modifier "w" note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ "pop{l}\t%0\n\t" ^~ %w0 %w0 third_party/cpuid.h:138:14:third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14 : "=&r" (__eax), "=&r" (__ebx) ^ warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) : "=&r" (__eax), "=&r" (__ebx) ^ ^ third_party/cpuid.h:third_party/cpuid.h:131131:15third_party/cpuid.h::15:131: 15: note: use constraint modifier "w" :note: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 use constraint modifier "w" third_party/cpuid.h:138: "mov{l}\t{%0, %1|%1, %0}\n\t" 29 "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 ^~third_party/cpuid.h:138 :29: %w0:warning: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths]value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] third_party/cpuid.h: : "=&r" (__eax), "=&r" (__ebx) : "=&r" (__eax), "=&r" (__ebx) 138: ^29: ^warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:19: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:third_party/cpuid.hthird_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ 131:third_party/cpuid.h:131:19: :22: note: use constraint modifier "w" note: use constraint modifier "w" 131 "mov{l}\t{%0, %1|%1, %0}\n\t" "mov{l}\t{%0, %1|%1, %0}\n\t":19: note: use constraint modifier "w" ^~ ^~ "mov{l}\t{%0, %1|%1, %0}\n\t" %w1 %w1 ^~ third_party/cpuid.h:138: %w1 14third_party/cpuid.h:138:29third_party/cpuid.h:138:29::: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) : "=&r" (__eax), "=&r" (__ebx) warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] ^ : "=&r" (__eax), "=&r" (__ebx) ^ ^ third_party/cpuid.h:131:22: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:131:26: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:14:third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) third_party/cpuid.h:131:22: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 ^ third_party/cpuid.h:138:14: third_party/cpuid.h:131:26: warning: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] note: : "=&r" (__eax), "=&r" (__ebx) value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] ^ use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h : "=&r" (__eax), "=&r" (__ebx)third_party/cpuid.h ^ :132::13819: note: use constraint modifier "w" : "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 14third_party/cpuid.h:138:third_party/cpuid.h :warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] 14:131:: warning: 26: : "=&r" (__eax), "=&r" (__ebx)value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ note: use constraint modifier "w" ^third_party/cpuid.h "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0:132:22: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ third_party/cpuid.h:132:19: note: %w0 use constraint modifier "w"third_party/cpuid.h third_party/cpuid.h "xor{l}\t{%2, %0|%0, %2}\n\t"::138:14138 : : ^~warning: 14: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:19: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] third_party/cpuid.h:133 : "=&r" (__eax), "=&r" (__ebx) ^ :15: note: use constraint modifier "w" third_party/cpuid.h "push{l}\t%0\n\t" :132:22: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:138:14: third_party/cpuid.h ^~: %w0warning: 132:22value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : note: use constraint modifier "w" third_party/cpuid.h:138:14: : "=&r" (__eax), "=&r" (__ebx) warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ : "=&r" (__eax), "=&r" (__ebx) ^ %w0 ^third_party/cpuid.h:138:14: third_party/cpuid.h: 133:15: note: use constraint modifier "w"warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:133:15: "push{l}\t%0\n\t" ^~ %w0 note: third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] third_party/cpuid.h:136 : "=&r" (__eax), "=&r" (__ebx):14: note: use constraint modifier "w" "pop{l}\t%0\n\t"use constraint modifier "w" ^ "push{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] ^~ %w0 third_party/cpuid.h:136:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ : "=&r" (__eax), "=&r" (__ebx) ^ %w0 third_party/cpuid.h:136:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:162:3:third_party/cpuid.h:162:3: error: invalid output constraint '=a' in asm __cpuid (__ext, __eax, __ebx, __ecx, __edx); ^ third_party/cpuid.h:162:3: error: invalid output constraint '=a' in asm __cpuid (__ext, __eax, __ebx, __ecx, __edx); ^ error: invalid output constraint '=a' in asm __cpuid (__ext, __eax, __ebx, __ecx, __edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid'third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ third_party/cpuid.h:185:3: error: invalid output constraint '=a' in asm __cpuid (__level, *__eax, *__ebx, *__ecx, *__edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^third_party/cpuid.h:185:3: error: invalid output constraint '=a' in asm __cpuid (__level, *__eax, *__ebx, *__ecx, *__edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ third_party/cpuid.h:185:3: error: invalid output constraint '=a' in asm __cpuid (__level, *__eax, *__ebx, *__ecx, *__edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ In file included from bt2_search.cpp:41: ./bt2_idx.h:2625:14: warning: variable 'patoff' set but not used [-Wunused-but-set-variable] TIndexOffU patoff = 0; ^ In file included from bt2_build.cpp:28In file included from bt2_build.cpp:28: ./bt2_idx.h:2625:14:: ./bt2_idx.h: warning: variable 'patoff' set but not used [-Wunused-but-set-variable] 2625:14: TIndexOffU patoff = 0; ^ warning: variable 'patoff' set but not used [-Wunused-but-set-variable] TIndexOffU patoff = 0; ^ In file included from bt2_search.cpp:53: In file included from ./aligner_driver.h:78: ./aligner_seed2.h:1264:10: warning: variable 'nuninited' set but not used [-Wunused-but-set-variable] size_t nuninited = 0; ^ ./aligner_seed2.h:2448:10: warning: variable 'ns' set but not used [-Wunused-but-set-variable] size_t ns = 0, ngap = 0, nrefn = 0; ^ ./aligner_seed2.h:2448:18: warning: variable 'ngap' set but not used [-Wunused-but-set-variable] size_t ns = 0, ngap = 0, nrefn = 0; ^ ./aligner_seed2.h:2448:28: warning: variable 'nrefn' set but not used [-Wunused-but-set-variable] size_t ns = 0, ngap = 0, nrefn = 0; ^ In file included from bt2_search.cpp:54: In file included from ./aligner_sw.h:73: ./sse_wrap.h:31:10: fatal error: 'simde/x86/sse2.h' file not found #include "simde/x86/sse2.h" ^~~~~~~~~~~~~~~~~~ 18 warnings and 3 errors generated. 14 warnings and 2 errors generated. 14 warnings and 2 errors generated. In file included from ref_read.cpp:In file included from 20: In file included from ./ref_read.h:ref_read.cpp:33: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ 20: In file included from ./ref_read.h:33: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from ref_read.cpp:20: In file included from ./ref_read.h:33: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from edit.cpp:21: In file included from ./edit.h:29: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from edit.cpp:21: In file included from ./edit.h:29: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from edit.cpp:21: In file included from ./edit.h:29: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from bt2_idx.cpp:25: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: In file included from ./diff_sample.h:27: In file included from ./multikey_qsort.h:24: In file included from ./sequence_io.h:28: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from bt2_idx.cpp:25: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: In file included from ./diff_sample.h:27: In file included from ./multikey_qsort.h:24: In file included from ./sequence_io.h:28: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from bt2_idx.cpp:25: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: In file included from ./diff_sample.h:27: In file included from ./multikey_qsort.h:24: In file included from ./sequence_io.h:28: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from bt2_idx.cpp:25: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: ./diff_sample.h:390:9: warning: variable 'amapEnts' set but not used [-Wunused-but-set-variable] size_t amapEnts = 1; ^ In file included from bt2_idx.cpp:25: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: ./diff_sample.h:390:9: warning: variable 'amapEnts' set but not used [-Wunused-but-set-variable] size_t amapEnts = 1; ^ ./diff_sample.h:573:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:644:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:573:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:644:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ In file included from bt2_idx.cpp:25: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: ./diff_sample.h:390:9: warning: variable 'amapEnts' set but not used [-Wunused-but-set-variable] size_t amapEnts = 1; ^ ./diff_sample.h:573:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:644:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ In file included from bt2_idx.cpp:25: In file included from ./bt2_idx.h:59: In file included from ./processor_support.h:17: third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:130:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:15: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:19: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:22: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:26: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:19: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:22: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:133:15: note: use constraint modifier "w" "push{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:136:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:162:3: error: invalid output constraint '=a' in asm __cpuid (__ext, __eax, __ebx, __ecx, __edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ third_party/cpuid.h:185:3: error: invalid output constraint '=a' in asm __cpuid (__level, *__eax, *__ebx, *__ecx, *__edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ In file included from bt2_idx.cpp:25: In file included from ./bt2_idx.h:59: In file included from ./processor_support.h:17: third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:130:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:15: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:19: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:22: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:26: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:19: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:22: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:133:15: note: use constraint modifier "w" "push{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:136:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:162:3: error: invalid output constraint '=a' in asm __cpuid (__ext, __eax, __ebx, __ecx, __edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ third_party/cpuid.h:185:3: error: invalid output constraint '=a' in asm __cpuid (__level, *__eax, *__ebx, *__ecx, *__edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ In file included from bt2_idx.cpp:25: In file included from ./bt2_idx.h:59: In file included from ./processor_support.h:17: third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:130:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:15: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:19: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:22: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:26: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:19: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:22: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:133:15: note: use constraint modifier "w" "push{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:136:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:162:3: error: invalid output constraint '=a' in asm __cpuid (__ext, __eax, __ebx, __ecx, __edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ third_party/cpuid.h:185:3: error: invalid output constraint '=a' in asm __cpuid (__level, *__eax, *__ebx, *__ecx, *__edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ In file included from bt2_idx.cpp:25: ./bt2_idx.h:2625:14: warning: variable 'patoff' set but not used [-Wunused-but-set-variable] TIndexOffU patoff = 0; ^ In file included from bt2_idx.cpp:25: ./bt2_idx.h:2625:14: warning: variable 'patoff' set but not used [-Wunused-but-set-variable] TIndexOffU patoff = 0; ^ In file included from bt2_idx.cpp:25: ./bt2_idx.h:2625:14: warning: variable 'patoff' set but not used [-Wunused-but-set-variable] TIndexOffU patoff = 0; ^ 14 warnings and 2 errors generated. 14 warnings and 2 errors generated. 14 warnings and 2 errors generated. In file included from bt2_io.cpp:25: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: In file included from ./diff_sample.h:27: In file included from ./multikey_qsort.h:24: In file included from ./sequence_io.h:28: ./ds.h:In file included from bt2_io.cpp:25: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: In file included from ./diff_sample.h:27: In file included from ./multikey_qsort.h:24: In file included from ./sequence_io.h:28: 4078./ds.h:4078:8: warning: :8: warning: variable 'thru' set but not used [-Wunused-but-set-variable]variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ int thru = 0; ^ In file included from bt2_io.cpp:25: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: In file included from ./diff_sample.h:27: In file included from ./multikey_qsort.h:24: In file included from ./sequence_io.h:28: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from bt2_io.cpp:25: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: ./diff_sample.h:390:9: warning: variable 'amapEnts' set but not used [-Wunused-but-set-variable] size_t amapEnts = 1; ^ In file included from bt2_io.cpp:25: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: ./diff_sample.h:390:9: warning: variable 'amapEnts' set but not used [-Wunused-but-set-variable] size_t amapEnts = 1; ^ In file included from bt2_io.cpp:25: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: ./diff_sample.h:390:9: warning: variable 'amapEnts' set but not used [-Wunused-but-set-variable] size_t amapEnts = 1; ^ ./diff_sample.h:573:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:573:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:573:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:644:./diff_sample.h:644:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] 13./diff_sample.h TIndexOffU added = 0;: warning: :variable 'added' set but not used [-Wunused-but-set-variable]644 TIndexOffU added = 0; ^ :13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ^ In file included from bt2_io.cpp:25: In file included from ./bt2_idx.h:59: In file included from ./processor_support.h:17: third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:130:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 In file included from bt2_io.cpp:25: In file included from ./bt2_idx.h:59: third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] In file included from : "=&r" (__eax), "=&r" (__ebx) ^ ./processor_support.h:17: third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:15: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t"third_party/cpuid.h ^~ %w0 third_party/cpuid.h::130:14: note: use constraint modifier "w" 138: "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:1429:: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] warning: : "=&r" (__eax), "=&r" (__ebx) ^ value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:15: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:19: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:138:In file included from bt2_io.cpp:25: In file included from ./bt2_idx.hthird_party/cpuid.h:131:1929: :59: In file included from ./processor_support.hwarning: : note: use constraint modifier "w" :17: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] "mov{l}\t{%0, %1|%1, %0}\n\t"third_party/cpuid.h ^~:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ : "=&r" (__eax), "=&r" (__ebx) %w1 ^ third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:22: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ third_party/cpuid.h:131:22: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 %w1 third_party/cpuid.hthird_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] :third_party/cpuid.h: : "=&r" (__eax), "=&r" (__ebx) ^ 138130:14: note: :14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths]use constraint modifier "w" "pop{l}\t%0\n\t" : "=&r" (__eax), "=&r" (__ebx) ^ ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131third_party/cpuid.h:131:26: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" :26: note: ^~use constraint modifier "w" %w0 third_party/cpuid.h:138 "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 :third_party/cpuid.h:138:1414: warning: third_party/cpuid.h:: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] 131value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] :15 : "=&r" (__eax), "=&r" (__ebx) ^ : note: use constraint modifier "w" : "=&r" (__eax), "=&r" (__ebx) "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 ^ third_party/cpuid.h:132:19:third_party/cpuid.h note: use constraint modifier "w" :138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h: : "=&r" (__eax), "=&r" (__ebx) ^ 138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:19: note: use constraint modifier "w" third_party/cpuid.h:132:22: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:third_party/cpuid.h ^~131::19: note: %w0 138third_party/cpuid.huse constraint modifier "w"::138:14 14:: warning: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) : "=&r" (__eax), "=&r" (__ebx) ^ %w1 ^ third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:133:15: note: use constraint modifier "w" "push{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:22: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:136:14: note: third_party/cpuid.h:third_party/cpuid.h:131:22: note: 138:14: warning: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ ^~ %w1 third_party/cpuid.h:third_party/cpuid.h:138:14: 133warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] :15: note: use constraint modifier "w" : "=&r" (__eax), "=&r" (__ebx) "push{l}\t%0\n\t"third_party/cpuid.h ^~ : %w0162:3 ^ : error: invalid output constraint '=a' in asm __cpuid (__ext, __eax, __ebx, __ecx, __edx); ^ third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] third_party/cpuid.h:131:26 : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h: note: use constraint modifier "w" third_party/cpuid.h::136:14: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" 104:7: note: expanded from macro '__cpuid' "pop{l}\t%0\n\t" ^~ %w0 ^~ %w0 third_party/cpuid.h:138:14: : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] ^ : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:19third_party/cpuid.h:162:3: error: invalid output constraint '=a' in asm __cpuid (__ext, __eax, __ebx, __ecx, __edx); ^ : note: use constraint modifier "w" third_party/cpuid.h "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0:104:7: note: expanded from macro '__cpuid' third_party/cpuid.h : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ :138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:185:3: third_party/cpuid.h:132:22error: invalid output constraint '=a' in asm : __cpuid (__level, *__eax, *__ebx, *__ecx, *__edx); ^ third_party/cpuid.h:104:7: note: note: use constraint modifier "w" expanded from macro '__cpuid' "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \third_party/cpuid.h: ^ 138:14: warning: third_party/cpuid.h:185:3: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ error: third_party/cpuid.h:133:15: note: use constraint modifier "w" "push{l}\t%0\n\t" ^~ %w0 invalid output constraint '=a' in asm third_party/cpuid.h __cpuid (__level, *__eax, *__ebx, *__ecx, *__edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ :138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:136:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:162:3: error: invalid output constraint '=a' in asm __cpuid (__ext, __eax, __ebx, __ecx, __edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ third_party/cpuid.h:185:3: error: invalid output constraint '=a' in asm __cpuid (__level, *__eax, *__ebx, *__ecx, *__edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ In file included from bt2_io.cpp:25: ./bt2_idx.h:2625:14: warning: variable 'patoff' set but not used [-Wunused-but-set-variable] TIndexOffU patoff = 0; ^ In file included from bt2_io.cpp:25: ./bt2_idx.h:2625:14: warning: variable 'patoff' set but not used [-Wunused-but-set-variable] TIndexOffU patoff = 0; ^ In file included from bt2_io.cpp:25: ./bt2_idx.h:2625:14: warning: variable 'patoff' set but not used [-Wunused-but-set-variable] TIndexOffU patoff = 0; ^ 14 warnings and 2 errors generated. 14 warnings and 2 errors generated. 14 warnings and 2 errors generated. In file included from bt2_util.cpp:26: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: In file included from ./diff_sample.h:27: In file included from ./multikey_qsort.h:24: In file included from ./sequence_io.h:28: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from bt2_util.cpp:26: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: In file included from ./diff_sample.h:27: In file included from ./multikey_qsort.h:24: In file included from ./sequence_io.h:28: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from bt2_util.cpp:26: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: In file included from ./diff_sample.h:27: In file included from ./multikey_qsort.h:24: In file included from ./sequence_io.h:28: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from bt2_util.cpp:26: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: ./diff_sample.h:390:9: warning: variable 'amapEnts' set but not used [-Wunused-but-set-variable] size_t amapEnts = 1; ^ In file included from bt2_util.cpp:26: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: ./diff_sample.h:390:9: warning: variable 'amapEnts' set but not used [-Wunused-but-set-variable] size_t amapEnts = 1; ^ In file included from bt2_util.cpp:26: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: ./diff_sample.h:390:9: warning: variable 'amapEnts' set but not used [-Wunused-but-set-variable] size_t amapEnts = 1; ^ ./diff_sample.h:573:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:573:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:644:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:644:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:573:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:644:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ In file included from bt2_util.cpp:26: In file included from ./bt2_idx.h:59: In file included from ./processor_support.h:17: third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ In file included from bt2_util.cpp:26: In file included from ./bt2_idx.h:59: In file included from ./processor_support.h:17: third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:130:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:third_party/cpuid.h:130:1414: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : : "=&r" (__eax), "=&r" (__ebx) ^ note: use constraint modifier "w" third_party/cpuid.h:131 "pop{l}\t%0\n\t" ^~ : %w015: note: use constraint modifier "w" third_party/cpuid.h:138 "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] :14 : "=&r" (__eax), "=&r" (__ebx) ^ : warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] third_party/cpuid.h:131:19: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" : "=&r" (__eax), "=&r" (__ebx) ^~ %w1 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] ^ : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:22: note: use constraint modifier "w" third_party/cpuid.h:131 "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:138:14: warning: :value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ 15: note: use constraint modifier "w" third_party/cpuid.h:131:26: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 ^~ %w0 third_party/cpuid.h:third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:19: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:22: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~third_party/cpuid.h:132:19: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h: %w1 138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:22:third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] note: use constraint modifier "w" : "=&r" (__eax), "=&r" (__ebx) ^ "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:26: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^third_party/cpuid.h:133:15: note: use constraint modifier "w" "push{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:19: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0third_party/cpuid.h:136 :14:third_party/cpuid.h:138:14: note: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] use constraint modifier "w" : "=&r" (__eax), "=&r" (__ebx) ^ "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:132:22: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:133:15: note: use constraint modifier "w" "push{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:162:3: error: invalid output constraint '=a' in asm __cpuid (__ext, __eax, __ebx, __ecx, __edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ third_party/cpuid.h:136:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:185:3: error: invalid output constraint '=a' in asm __cpuid (__level, *__eax, *__ebx, *__ecx, *__edx); ^ third_party/cpuid.h:162:3: error: third_party/cpuid.h:invalid output constraint '=a' in asm 104:7 __cpuid (__ext, __eax, __ebx, __ecx, __edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' :In file included from bt2_util.cpp:26: In file included from ./bt2_idx.h: : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \59: In file included from ./processor_support.h : ^ note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \17: third_party/cpuid.h:138:14 ^ : warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:185:3: error: invalid output constraint '=a' in asm __cpuid (__level, *__eax, *__ebx, *__ecx, *__edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ third_party/cpuid.h:130:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:15: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:19: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:22: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:26: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:19: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:22: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:133:15: note: use constraint modifier "w" "push{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:136:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:162:3: error: invalid output constraint '=a' in asm __cpuid (__ext, __eax, __ebx, __ecx, __edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ third_party/cpuid.h:185:3: error: invalid output constraint '=a' in asm __cpuid (__level, *__eax, *__ebx, *__ecx, *__edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ In file included from bt2_util.cpp:26: ./bt2_idx.h:2625:14: warning: variable 'patoff' set but not used [-Wunused-but-set-variable] TIndexOffU patoff = 0; ^ In file included from bt2_util.cpp:26: ./bt2_idx.h:2625:14: warning: variable 'patoff' set but not used [-Wunused-but-set-variable] TIndexOffU patoff = 0; ^ In file included from bt2_util.cpp:26: ./bt2_idx.h:2625:14: warning: variable 'patoff' set but not used [-Wunused-but-set-variable] TIndexOffU patoff = 0; ^ bt2_util.cpp:175:13: warning: variable 'restOff' set but not used [-Wunused-but-set-variable] TIndexOffU restOff = 0; ^ bt2_util.cpp:175:13: warning: variable 'restOff' set but not used [-Wunused-but-set-variable] TIndexOffU restOff = 0; ^ bt2_util.cpp:175:13: warning: variable 'restOff' set but not used [-Wunused-but-set-variable] TIndexOffU restOff = 0; ^ 15 warnings and 2 errors generated. 15 warnings and 2 errors generated. 15 warnings and 2 errors generated. In file included from reference.cpp:22: In file included from ./reference.h:32: In file included from ./ref_read.h:33: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] In file included from reference.cpp:22: In file included from ./reference.h int thru = 0;:32: In file included from ./ref_read.h: In file included from reference.cpp: ^3322: ./ds.h:4078:8: warning: : variable 'thru' set but not used [-Wunused-but-set-variable] In file included from ./reference.h:32 int thru = 0; ^: In file included from ./ref_read.h:33: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from ds.cpp:In file included from ds.cpp:20: 20./ds.h:4078:8: : ./ds.h:4078:8: warning: warning: variable 'thru' set but not used [-Wunused-but-set-variable] In file included from variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ds.cpp :20 : int thru = 0; ^ ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ 1 warning generated. 1 warning generated. 1 warning generated. In file included from multikey_qsort.cpp:20: In file included from ./multikey_qsort.h:24: In file included from ./sequence_io.h:28: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from multikey_qsort.cpp:20: In file included from ./multikey_qsort.h:24: In file included from ./sequence_io.h:28: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from multikey_qsort.cpp:20: In file included from ./multikey_qsort.h:24: In file included from ./sequence_io.h:28: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from multikey_qsort.cpp:20: In file included from ./multikey_qsort.h:27: ./diff_sample.h:390:9: warning: variable 'amapEnts' set but not used [-Wunused-but-set-variable] In file included from multikey_qsort.cpp size_t amapEnts = 1; ^ :20: In file included from ./multikey_qsort.h:27: ./diff_sample.h:390:9: warning: variable 'amapEnts' set but not used [-Wunused-but-set-variable] size_t amapEnts = 1; ^ In file included from multikey_qsort.cpp:20: In file included from ./multikey_qsort.h:27: ./diff_sample.h:390:9: warning: variable 'amapEnts' set but not used [-Wunused-but-set-variable] size_t amapEnts = 1; ^ ./diff_sample.h:573:13: warning: variable 'added' set but not used [-Wunused-but-set-variable]./diff_sample.h :573 TIndexOffU added = 0; :13: ^ warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:573:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:644:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:644:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:644:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ 4 warnings generated. 4 warnings generated. 4 warnings generated. In file included from random_source.cpp:21: In file included from ./random_util.h:25: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] In file included from random_source.cpp:21: In file included from ./random_util.h int thru = 0; ^ :25: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from random_source.cpp:21: In file included from ./random_util.h:25: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ 1 warning1 warning generated. generated. 1 warning generated. In file included from diff_sample.cpp:20: In file included from ./diff_sample.h:27: In file included from ./multikey_qsort.h:24: In file included from ./sequence_io.h:28: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from diff_sample.cpp:20: In file included from ./diff_sample.h:27: In file included from ./multikey_qsort.h:24: In file included from ./sequence_io.h:28: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from pat.cpp:30: In file included from ./pat.h:39: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from diff_sample.cpp:20: ./diff_sample.h:390:9: warning: variable 'amapEnts' set but not used [-Wunused-but-set-variable] size_t amapEnts = 1; ^ In file included from diff_sample.cpp:20: ./diff_sample.h:390:9: warning: variable 'amapEnts' set but not used [-Wunused-but-set-variable] size_t amapEnts = 1; ^ ./diff_sample.h:573:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:644:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:573:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:644:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ 4 warnings generated. 4 warnings generated. In file included from bowtie_build_main.cpp:25: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from bowtie_build_main.cpp:25: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ 1 warning generated. 1 warning generated. gmake: *** [Makefile:307: bowtie2-build-s] Error 1 gmake: *** Waiting for unfinished jobs.... gmake: *** [Makefile:315: bowtie2-build-l] Error 1 1 warning generated. In file included from sam.cpp:22: In file included from ./sam.h:24: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ 1 warning generated. In file included from read_qseq.cpp:20: In file included from ./pat.h:39: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ 1 warning generated. In file included from aligner_seed_policy.cpp:24: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ 1 warning generated. In file included from aligner_seed.cpp:20: In file included from ./aligner_cache.h:59: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from aligner_seed.cpp:23: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: ./diff_sample.h:390:9: warning: variable 'amapEnts' set but not used [-Wunused-but-set-variable] size_t amapEnts = 1; ^ ./diff_sample.h:573:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:644:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ In file included from aligner_seed.cpp:23: In file included from ./bt2_idx.h:59: In file included from ./processor_support.h:17: third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:130:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:15: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:19: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:22: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:26: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:19: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:22: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:133:15: note: use constraint modifier "w" "push{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:136:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:162:3: error: invalid output constraint '=a' in asm __cpuid (__ext, __eax, __ebx, __ecx, __edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ third_party/cpuid.h:185:3: error: invalid output constraint '=a' in asm __cpuid (__level, *__eax, *__ebx, *__ecx, *__edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ In file included from aligner_seed.cpp:23: ./bt2_idx.h:2625:14: warning: variable 'patoff' set but not used [-Wunused-but-set-variable] TIndexOffU patoff = 0; ^ 14 warnings and 2 errors generated. In file included from aligner_seed2.cpp:22: In file included from ./aligner_seed2.h:101: In file included from ./random_util.h:25: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from aligner_seed2.cpp:22: In file included from ./aligner_seed2.h:103: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: ./diff_sample.h:390:9: warning: variable 'amapEnts' set but not used [-Wunused-but-set-variable] size_t amapEnts = 1; ^ ./diff_sample.h:573:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:644:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ In file included from aligner_seed2.cpp:22: In file included from ./aligner_seed2.h:103: In file included from ./bt2_idx.h:59: In file included from ./processor_support.h:17: third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:130:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:15: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:19: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:22: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:26: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:19: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:22: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:133:15: note: use constraint modifier "w" "push{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:136:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:162:3: error: invalid output constraint '=a' in asm __cpuid (__ext, __eax, __ebx, __ecx, __edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ third_party/cpuid.h:185:3: error: invalid output constraint '=a' in asm __cpuid (__level, *__eax, *__ebx, *__ecx, *__edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ In file included from aligner_seed2.cpp:22: In file included from ./aligner_seed2.h:103: ./bt2_idx.h:2625:14: warning: variable 'patoff' set but not used [-Wunused-but-set-variable] TIndexOffU patoff = 0; ^ In file included from aligner_seed2.cpp:22: ./aligner_seed2.h:1264:10: warning: variable 'nuninited' set but not used [-Wunused-but-set-variable] size_t nuninited = 0; ^ ./aligner_seed2.h:2448:10: warning: variable 'ns' set but not used [-Wunused-but-set-variable] size_t ns = 0, ngap = 0, nrefn = 0; ^ ./aligner_seed2.h:2448:18: warning: variable 'ngap' set but not used [-Wunused-but-set-variable] size_t ns = 0, ngap = 0, nrefn = 0; ^ ./aligner_seed2.h:2448:28: warning: variable 'nrefn' set but not used [-Wunused-but-set-variable] size_t ns = 0, ngap = 0, nrefn = 0; ^ aligner_seed2.cpp:1646:11: warning: variable 'nopts' set but not used [-Wunused-but-set-variable] size_t nopts = 0; ^ aligner_seed2.cpp:1383:9: warning: variable 'off3p' set but not used [-Wunused-but-set-variable] size_t off3p = q.length() - off5p - 1; ^ aligner_seed2.cpp:1390:9: warning: variable 'nalloc' set but not used [-Wunused-but-set-variable] size_t nalloc = 0; ^ 21 warnings and 2 errors generated. In file included from aligner_sw.cpp:25: In file included from ./aligner_sw.h:73: ./sse_wrap.h:31:10: fatal error: 'simde/x86/sse2.h' file not found #include "simde/x86/sse2.h" ^~~~~~~~~~~~~~~~~~ 1 error generated. In file included from aligner_sw_driver.cpp:46: In file included from ./aligner_cache.h:59: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from aligner_sw_driver.cpp:47: In file included from ./aligner_sw_driver.h:81: In file included from ./aligner_sw.h:73: ./sse_wrap.h:31:10: fatal error: 'simde/x86/sse2.h' file not found #include "simde/x86/sse2.h" ^~~~~~~~~~~~~~~~~~ 1 warning and 1 error generated. In file included from aligner_cache.cpp:22: In file included from ./aligner_cache.h:59: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ 1 warning generated. In file included from aligner_result.cpp:21: In file included from ./reference.h:32: In file included from ./ref_read.h:33: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ 1 warning generated. In file included from aln_sink.cpp:22: In file included from ./aln_sink.h:24: In file included from ./read.h:25: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ 1 warning generated. In file included from dp_framer.cpp:20: In file included from ./dp_framer.h:51: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ 1 warning generated. In file included from presets.cpp:21: In file included from ./presets.h:32: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ 1 warning generated. In file included from unique.cpp:20: In file included from ./unique.h:39: In file included from ./aligner_result.h:27: In file included from ./read.h:25: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ 1 warning generated. In file included from simple_func.cpp:22: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ 1 warning generated. In file included from random_util.cpp:20: In file included from ./random_util.h:25: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ 1 warning generated. In file included from aligner_bt.cpp:20: In file included from ./aligner_bt.h:25: In file included from ./aligner_sw_common.h:23: In file included from ./aligner_result.h:27: In file included from ./read.h:25: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from aligner_bt.cpp:20: In file included from ./aligner_bt.h:31: In file included from ./sse_util.h:27: ./sse_wrap.h:31:10: fatal error: 'simde/x86/sse2.h' file not found #include "simde/x86/sse2.h" ^~~~~~~~~~~~~~~~~~ 1 warning and 1 error generated. In file included from sse_util.cpp:20: In file included from ./sse_util.h:24: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from sse_util.cpp:20: In file included from ./sse_util.h:27: ./sse_wrap.h:31:10: fatal error: 'simde/x86/sse2.h' file not found #include "simde/x86/sse2.h" ^~~~~~~~~~~~~~~~~~ 1 warning and 1 error generated. In file included from aligner_swsse.cpp:21: In file included from ./aligner_sw_common.h:23: In file included from ./aligner_result.h:27: In file included from ./read.h:25: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from aligner_swsse.cpp:22: In file included from ./aligner_swsse.h:28: In file included from ./sse_util.h:27: ./sse_wrap.h:31:10: fatal error: 'simde/x86/sse2.h' file not found #include "simde/x86/sse2.h" ^~~~~~~~~~~~~~~~~~ 1 warning and 1 error generated. In file included from outq.cpp:22: In file included from ./outq.h:24: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ 1 warning generated. In file included from aligner_swsse_loc_i16.cpp:56: In file included from ./aligner_sw.h:73: ./sse_wrap.h:31:10: fatal error: 'simde/x86/sse2.h' file not found #include "simde/x86/sse2.h" ^~~~~~~~~~~~~~~~~~ 1 error generated. In file included from aligner_swsse_ee_i16.cpp:56: In file included from ./aligner_sw.h:73: ./sse_wrap.h:31:10: fatal error: 'simde/x86/sse2.h' file not found #include "simde/x86/sse2.h" ^~~~~~~~~~~~~~~~~~ 1 error generated. In file included from aligner_swsse_loc_u8.cpp:56: In file included from ./aligner_sw.h:73: ./sse_wrap.h:31:10: fatal error: 'simde/x86/sse2.h' file not found #include "simde/x86/sse2.h" ^~~~~~~~~~~~~~~~~~ 1 error generated. In file included from aligner_swsse_ee_u8.cpp:56: In file included from ./aligner_sw.h:73: ./sse_wrap.h:31:10: fatal error: 'simde/x86/sse2.h' file not found #include "simde/x86/sse2.h" ^~~~~~~~~~~~~~~~~~ 1 error generated. In file included from aligner_driver.cpp:20: In file included from ./aligner_driver.h:78: In file included from ./aligner_seed2.h:101: In file included from ./random_util.h:25: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ In file included from aligner_driver.cpp:20: In file included from ./aligner_driver.h:78: In file included from ./aligner_seed2.h:103: In file included from ./bt2_idx.h:42: In file included from ./blockwise_sa.h:31: ./diff_sample.h:390:9: warning: variable 'amapEnts' set but not used [-Wunused-but-set-variable] size_t amapEnts = 1; ^ ./diff_sample.h:573:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ ./diff_sample.h:644:13: warning: variable 'added' set but not used [-Wunused-but-set-variable] TIndexOffU added = 0; ^ In file included from aligner_driver.cpp:20: In file included from ./aligner_driver.h:78: In file included from ./aligner_seed2.h:103: In file included from ./bt2_idx.h:59: In file included from ./processor_support.h:17: third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:130:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:15: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:19: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:138:29: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:22: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w1 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:131:26: note: use constraint modifier "w" "mov{l}\t{%0, %1|%1, %0}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:19: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:132:22: note: use constraint modifier "w" "xor{l}\t{%2, %0|%0, %2}\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:133:15: note: use constraint modifier "w" "push{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:138:14: warning: value size does not match register size specified by the constraint and modifier [-Wasm-operand-widths] : "=&r" (__eax), "=&r" (__ebx) ^ third_party/cpuid.h:136:14: note: use constraint modifier "w" "pop{l}\t%0\n\t" ^~ %w0 third_party/cpuid.h:162:3: error: invalid output constraint '=a' in asm __cpuid (__ext, __eax, __ebx, __ecx, __edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ third_party/cpuid.h:185:3: error: invalid output constraint '=a' in asm __cpuid (__level, *__eax, *__ebx, *__ecx, *__edx); ^ third_party/cpuid.h:104:7: note: expanded from macro '__cpuid' : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ ^ In file included from aligner_driver.cpp:20: In file included from ./aligner_driver.h:78: In file included from ./aligner_seed2.h:103: ./bt2_idx.h:2625:14: warning: variable 'patoff' set but not used [-Wunused-but-set-variable] TIndexOffU patoff = 0; ^ In file included from aligner_driver.cpp:20: In file included from ./aligner_driver.h:78: ./aligner_seed2.h:1264:10: warning: variable 'nuninited' set but not used [-Wunused-but-set-variable] size_t nuninited = 0; ^ ./aligner_seed2.h:2448:10: warning: variable 'ns' set but not used [-Wunused-but-set-variable] size_t ns = 0, ngap = 0, nrefn = 0; ^ ./aligner_seed2.h:2448:18: warning: variable 'ngap' set but not used [-Wunused-but-set-variable] size_t ns = 0, ngap = 0, nrefn = 0; ^ ./aligner_seed2.h:2448:28: warning: variable 'nrefn' set but not used [-Wunused-but-set-variable] size_t ns = 0, ngap = 0, nrefn = 0; ^ 18 warnings and 2 errors generated. In file included from bowtie_main.cpp:25: ./ds.h:4078:8: warning: variable 'thru' set but not used [-Wunused-but-set-variable] int thru = 0; ^ 1 warning generated. gmake: *** [Makefile:343: bowtie2-align-s] Error 1 *** Error code 2 Stop. bmake[1]: stopped in /Volumes/data/jenkins/workspace/pkgsrc-macos11-trunk-arm64/biology/bowtie2 *** Error code 1 Stop. bmake: stopped in /Volumes/data/jenkins/workspace/pkgsrc-macos11-trunk-arm64/biology/bowtie2