=> Bootstrap dependency digest>=20211023: found digest-20220214 => Checksum BLAKE2s OK for R-4.2.0.tar.gz => Checksum SHA512 OK for R-4.2.0.tar.gz ===> Installing dependencies for R-4.2.0nb5 ========================================================================== The following variables will affect the build process of this package, R-4.2.0nb5. Their current value is shown below: * CURSES_DEFAULT = ncurses * JPEG_DEFAULT = jpeg * SSLBASE (defined) * SSLCERTBUNDLE (not defined) * SSLCERTS = /opt/pkg/etc/openssl/certs * SSLDIR = /opt/pkg/etc/openssl * SSLKEYS = /opt/pkg/etc/openssl/private Based on these variables, the following variables have been set: * CURSES_TYPE = ncurses * JPEGBASE (defined, but empty) * JPEG_TYPE = jpeg * TERMCAP_TYPE = curses You may want to abort the process now with CTRL-C and change the value of variables in the first group before continuing. Be sure to run `/opt/pkg/bin/bmake clean' after the changes. ========================================================================== => Tool dependency glib2-tools-[0-9]*: found glib2-tools-2.74.6 => Tool dependency libtool-base>=2.4.2nb9: found libtool-base-2.4.7nb1 => Tool dependency mktools-[0-9]*: found mktools-20220614 => Tool dependency automake>=1.9: found automake-1.16.5nb3 => Tool dependency autoconf>=2.58: found autoconf-2.71nb2 => Tool dependency gmake>=3.81: found gmake-4.4 => Tool dependency gtexinfo>=5.1: found gtexinfo-7.0.2 => Tool dependency nbpatch-[0-9]*: found nbpatch-20151107 => Tool dependency pkgconf-[0-9]*: found pkgconf-1.9.4nb1 => Tool dependency cwrappers>=20150314: found cwrappers-20220403 => Tool dependency checkperms>=1.1: found checkperms-1.12 => Build dependency libtool-fortran>=2.4.2nb9: found libtool-fortran-2.4.7nb1 => Build dependency xorgproto>=2016.1: found xorgproto-2022.2 => Build dependency xcb-proto>=1.4: found xcb-proto-1.15.2nb1 => Full dependency pkg_install-info-[0-9]*: found pkg_install-info-4.5nb3 => Full dependency perl>=5.8.0: found perl-5.36.0 => Full dependency bzip2>=1.0.5: found bzip2-1.0.8 => Full dependency xz>=5.0.0: found xz-5.4.2 => Full dependency libiconv>=1.9.1nb4: found libiconv-1.17 => Full dependency gettext-lib>=0.18: found gettext-lib-0.21.1 => Full dependency glib2>=2.70.2: found glib2-2.74.6 => Full dependency pcre2>=10.30: found pcre2-10.42 => Full dependency zlib>=1.2.3: found zlib-1.2.13 => Full dependency pango>=1.50.12nb1: found pango-1.50.12nb1 => Full dependency png>=1.6.0nb1: found png-1.6.39 => Full dependency cairo>=1.16.0nb9: found cairo-1.16.0nb9 => Full dependency readline>=6.0: found readline-8.2nb1 => Full dependency jpeg>=9: found jpeg-9e => Full dependency tiff>=4.5.0: found tiff-4.5.0nb1 => Full dependency curl>=7.86.0nb1: found curl-8.0.0 => Full dependency tk>=8.6.12nb1: found tk-8.6.12nb1 => Full dependency gcc12>=: found gcc12-12.2.0 => Full dependency gcc12>=12.1.0nb1: found gcc12-12.2.0 ===> Overriding tools for R-4.2.0nb5 ===> Extracting for R-4.2.0nb5 ===> Patching for R-4.2.0nb5 => Applying pkgsrc patches for R-4.2.0nb5 => Verifying /Volumes/data/jenkins/workspace/pkgsrc-macos11-trunk-arm64/math/R/patches/patch-configure.ac => Applying pkgsrc patch /Volumes/data/jenkins/workspace/pkgsrc-macos11-trunk-arm64/math/R/patches/patch-configure.ac Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-configure.ac,v 1.6 2022/03/23 21:16:44 wiz Exp $ | |Do not include system paths in R_LD_LIBRARY_PATH. |NetBSD, FreeBSD, DragonFly, Darwin and Solaris fixes | |--- configure.ac.orig 2019-06-08 08:57:35.738653089 +0000 |+++ configure.ac -------------------------- Patching file configure.ac using Plan A... Hunk #1 succeeded at 33. Hunk #2 succeeded at 312 (offset 21 lines). Hunk #3 succeeded at 797 (offset 87 lines). Hunk #4 succeeded at 1352 (offset 75 lines). Hunk #5 succeeded at 1453 (offset 87 lines). Hunk #6 succeeded at 1483 (offset 75 lines). Hunk #7 succeeded at 1589 (offset 87 lines). Hunk #8 succeeded at 1637 (offset 75 lines). Hunk #9 succeeded at 2622 (offset 131 lines). done => Verifying /Volumes/data/jenkins/workspace/pkgsrc-macos11-trunk-arm64/math/R/patches/patch-m4_R.m4 => Applying pkgsrc patch /Volumes/data/jenkins/workspace/pkgsrc-macos11-trunk-arm64/math/R/patches/patch-m4_R.m4 Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-m4_R.m4,v 1.1 2017/10/06 20:47:37 rumko Exp $ | |Ensure tests for clog & co. fail, not just emit warning | |--- m4/R.m4.orig 2017-01-05 23:15:05.000000000 +0000 |+++ m4/R.m4 -------------------------- Patching file m4/R.m4 using Plan A... Hunk #1 succeeded at 225 (offset -1 lines). Hunk #2 succeeded at 905 (offset -110 lines). Hunk #3 succeeded at 1109 (offset -1 lines). Hunk #4 succeeded at 3740 (offset 95 lines). done => Verifying /Volumes/data/jenkins/workspace/pkgsrc-macos11-trunk-arm64/math/R/patches/patch-src_library_stats_src_Makefile.in => Applying pkgsrc patch /Volumes/data/jenkins/workspace/pkgsrc-macos11-trunk-arm64/math/R/patches/patch-src_library_stats_src_Makefile.in Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-src_library_stats_src_Makefile.in,v 1.2 2016/07/26 04:53:33 wen Exp $ | |${R_INCLUDE_DIR} is used in the default compiler flags. | |--- src/library/stats/src/Makefile.in.orig 2016-07-26 01:57:49.000000000 +0000 |+++ src/library/stats/src/Makefile.in -------------------------- Patching file src/library/stats/src/Makefile.in using Plan A... Hunk #1 succeeded at 10. done => Verifying /Volumes/data/jenkins/workspace/pkgsrc-macos11-trunk-arm64/math/R/patches/patch-src_main_character.c => Applying pkgsrc patch /Volumes/data/jenkins/workspace/pkgsrc-macos11-trunk-arm64/math/R/patches/patch-src_main_character.c Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-src_main_character.c,v 1.5 2021/06/13 13:10:47 wen Exp $ | |--- src/main/character.c.orig 2021-06-13 06:56:55.454092033 +0000 |+++ src/main/character.c -------------------------- Patching file src/main/character.c using Plan A... Hunk #1 succeeded at 1751 (offset 7 lines). Hunk #2 succeeded at 1784 (offset 7 lines). done ===> Creating toolchain wrappers for R-4.2.0nb5 ===> Configuring for R-4.2.0nb5 => Substituting "rpath" in configure.ac autoreconf: export WARNINGS= autoreconf: Entering directory '.' autoreconf: configure.ac: not using Gettext autoreconf: running: aclocal --force configure.ac:1760: warning: macro 'AM_LANGINFO_CODESET' not found in library configure.ac:2302: warning: macro 'AM_NLS' not found in library configure.ac:2306: warning: macro 'AM_GNU_GETTEXT_VERSION' not found in library configure.ac:2307: warning: macro 'AM_GNU_GETTEXT' not found in library autoreconf: configure.ac: tracing configure.ac: warning: AM_GNU_GETTEXT is used, but not AM_GNU_GETTEXT_VERSION or AM_GNU_GETTEXT_REQUIRE_VERSION autoreconf: running: libtoolize --copy --force libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'tools'. libtoolize: copying file 'tools/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am. autoreconf: configure.ac: not using Intltool autoreconf: configure.ac: not using Gtkdoc autoreconf: running: aclocal --force configure.ac:1760: warning: macro 'AM_LANGINFO_CODESET' not found in library configure.ac:2302: warning: macro 'AM_NLS' not found in library configure.ac:2306: warning: macro 'AM_GNU_GETTEXT_VERSION' not found in library configure.ac:2307: warning: macro 'AM_GNU_GETTEXT' not found in library autoreconf: running: /opt/pkg/bin/autoconf --force autoreconf: running: /opt/pkg/bin/autoheader --force autoreconf: configure.ac: not using Automake autoreconf: 'tools/config.sub' is updated autoreconf: 'tools/config.guess' is updated autoreconf: Leaving directory '.' => Modifying GNU configure scripts to avoid --recheck => Replacing config-guess with pkgsrc versions => Replacing config-sub with pkgsrc versions => Replacing install-sh with pkgsrc version => Checking for portability problems in extracted files checking build system type... aarch64-apple-darwin22 checking host system type... aarch64-apple-darwin22 loading site script './config.site' loading build-specific script './config.site' checking for pwd... /bin/pwd checking whether builddir is srcdir... yes checking whether ln -s works... yes checking for ar... ar checking for a BSD-compatible install... /usr/bin/install -c -o pbulk -g staff checking for sed... /opt/pkg/bin/nbsed checking for which... /usr/bin/which checking for less... /usr/bin/less checking for /usr/bin/tar... /usr/bin/tar checking for tex... no checking for pdftex... no configure: WARNING: you cannot build PDF versions of the R manuals checking for pdflatex... 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is declared... yes checking whether csqrt exists and is declared... yes checking whether cpow exists and is declared... yes checking whether ccos exists and is declared... yes checking whether csin exists and is declared... yes checking whether ctan exists and is declared... yes checking whether cacos exists and is declared... yes checking whether casin exists and is declared... yes checking whether catan exists and is declared... yes checking whether ccosh exists and is declared... yes checking whether csinh exists and is declared... yes checking whether ctanh exists and is declared... yes checking for working ctanh... yes checking whether 'struct tm' includes tm_zone... yes checking whether 'struct tm' includes tm_gmtoff... yes checking for dgemm_ in -framework Accelerate... yes checking whether double complex BLAS can be used... Bus error yes checking whether the BLAS is complete... (cached) yes checking for dpstrf_... yes checking for iconv.h... yes checking for iconv... in libiconv checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes checking whether iconv accepts "CP1252"... yes checking for iconvlist... yes checking for iconv... yes checking for iconv declaration... extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for wchar.h... (cached) yes checking for wctype.h... yes checking whether mbrtowc exists and is declared... yes checking whether wcrtomb exists and is declared... yes checking whether wcscoll exists and is declared... yes checking whether wcsftime exists and is declared... yes checking whether wcstod exists and is declared... yes checking whether mbstowcs exists and is declared... yes checking whether wcstombs exists and is declared... yes checking whether wctrans exists and is declared... yes checking whether wctype exists and is declared... yes checking whether iswctype exists and is declared... yes checking whether wcwidth exists and is declared... yes checking whether wcswidth exists and is declared... yes checking for wctrans_t... yes checking for mbstate_t... yes checking for ICU... no checking for ucol_open in -licucore... yes checking for X... disabled using X11 ... no checking whether pkg-config knows about cairo and pango... yes configure: using static pangocairo checking whether cairo including pango is >= 1.2 and works... yes checking for CFStringGetSystemEncoding in CoreFoundation framework... -framework CoreFoundation checking for /opt/pkg/lib/tclConfig.sh... /opt/pkg/lib/tclConfig.sh checking for /opt/pkg/lib/tkConfig.sh... /opt/pkg/lib/tkConfig.sh checking for tcl.h... yes checking for tk.h... yes checking whether compiling/linking Tcl/Tk code works... yes checking for BSD networking... yes checking for rpc/types.h... yes checking for rpc/xdr.h... yes checking for XDR support... yes checking for inflateInit2_ in -lz... yes checking for zlib.h... yes checking if zlib version >= 1.2.5... (cached) yes checking whether zlib support suffices... yes checking for BZ2_bzlibVersion in -lbz2... yes checking for bzlib.h... yes checking if bzip2 version >= 1.0.6... (cached) yes checking whether bzip2 support suffices... yes checking for lzma_version_number in -llzma... yes checking for lzma.h... yes checking if lzma version >= 5.0.3... yes checking for pcre2.h... yes checking for pcre2_compile_8 in -lpcre2-8... yes checking if PCRE2 has Unicode support... yes checking whether PCRE support suffices... yes checking for curl-config... /opt/pkg/bin/curl-config checking libcurl version ... 8.0.0 checking for curl/curl.h... yes checking if libcurl is version 7 and >= 7.28.0... no configure: error: libcurl >= 7.28.0 library and headers are required with support for https *** Error code 1 Stop. bmake[1]: stopped in /Volumes/data/jenkins/workspace/pkgsrc-macos11-trunk-arm64/math/R *** Error code 1 Stop. bmake: stopped in /Volumes/data/jenkins/workspace/pkgsrc-macos11-trunk-arm64/math/R